mRNA_P-littoralis_Contig168.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig168.22.1
Unique NamemRNA_P-littoralis_Contig168.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 7.390e-29
Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
            K+++ F+L+AL++ GS +V GR   R ++PPN  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++   +  YV+   +A VA R  + N G+ AG   VC AF DLI ACS SSF+VR+ SFT
Sbjct:  133 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFT 259          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.710e-28
Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
            K+++ F+L+AL++ GS +V GR   R ++PPN  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++   +  YV+   +A VA R  + N G+ AG   VC AF DLI ACS SSF+VR+ SFT
Sbjct:  238 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFT 364          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.070e-27
Identity = 59/128 (46.09%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
            K+++ F+L+AL++  S +V GR   R ++P N  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++   +  YV+   +A VA R  + N G+ AG   VC AF DLI ACS SSF+VR+ SFT
Sbjct:   14 KKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFT 140          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 9.810e-24
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
            K+++ F+++AL+  GS +V  R     ++PPN  P+ D+T+ GG+SALTG Q+W++SS  P L  PIF++  ++  YV+   +  VA R  +   G+ AG   VC AF DL+ ACS S F+VR+ SFT
Sbjct:  144 KKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDP-GTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFT 270          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-16
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   49 SALVSGR----LKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
            SAL SG+      + ++ P  +E + D+T+ GG SALTG Q+W++SSI+P L  PIF++  ++  YV+   +  VA R  +   G+ AG   VC AF DL+ ACS S F+VR+ SFT
Sbjct:   76 SALNSGKKIMGFVMDALDPAGSEIVPDITSAGGRSALTGQQLWLVSSIVPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEP-GTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFT 191          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.270e-12
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 213
            K+++ F+++AL+  G+ +V  R   R ++PPN  P+ D+T+ GG SALTG Q+W+++SI P L  PIF++
Sbjct:  189 KKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSS 258          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.960e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 FLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 213
            F+++AL+  GS +V  R   R ++P N  P+ D+T+ GG+SALTG Q+W++SSI P L  P+F++
Sbjct:  608 FVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.780e-5
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    4 KRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMK 228
            +++ + LL  L+   G  L+S   K  S+      PL D  +DGGFSAL+G  +W LSS+  L+FRP+  +  SMK
Sbjct:  300 RKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWTLSSVALLVFRPVLRSVASMK 375          
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.440e-5
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    7 RMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMK 228
            ++ + LL  L+   G  L+S   K  S+      PL D  +DGGFSAL+G  +W LSS+  L+FRP+  +  SMK
Sbjct:  593 KIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWRLSSVALLVFRPVLRSVASMK 667          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G4Y8_ECTSI7.390e-2947.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI4_ECTSI1.710e-2847.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSA9_ECTSI8.070e-2746.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI9.810e-2442.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K975_9PHAE1.150e-1642.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX4_9PHAE1.270e-1242.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGI1_9PHAE3.960e-1144.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH2_ECTSI1.780e-539.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW6_ECTSI8.440e-540.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig168contigP-littoralis_Contig168:108103..108950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789808.0958009-CDS-P-littoralis_Contig168:108102..1082761680789808.0958009-CDS-P-littoralis_Contig168:108102..108276Pylaiella littoralis U1_48CDSP-littoralis_Contig168 108103..108276 -
1680789808.1087787-CDS-P-littoralis_Contig168:108725..1089411680789808.1087787-CDS-P-littoralis_Contig168:108725..108941Pylaiella littoralis U1_48CDSP-littoralis_Contig168 108726..108941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789808.1200824-UTR-P-littoralis_Contig168:108941..1089501680789808.1200824-UTR-P-littoralis_Contig168:108941..108950Pylaiella littoralis U1_48UTRP-littoralis_Contig168 108942..108950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig168.22.1prot_P-littoralis_Contig168.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig168 108103..108941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig168.22.1

>prot_P-littoralis_Contig168.22.1 ID=prot_P-littoralis_Contig168.22.1|Name=mRNA_P-littoralis_Contig168.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQ
IWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLK
NVCGAFLDLITACSASSFMVRAKSFTEAEL
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mRNA from alignment at P-littoralis_Contig168:108103..108950-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig168.22.1 ID=mRNA_P-littoralis_Contig168.22.1|Name=mRNA_P-littoralis_Contig168.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=848bp|location=Sequence derived from alignment at P-littoralis_Contig168:108103..108950- (Pylaiella littoralis U1_48)
GCAAAGCGCATGATACGCTTCTTGCTGAATGCACTCAACACCGACGGATC GGCGCTCGTTTCCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACG CGGAGCCGCTGGGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGACT GGAAACCAGATCTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGGCC TATTTTCGCCAACCACATGTCCATGGTAAGCAAATAATCCGTCGATTTCG GGCTTCAGTCAACGCCCAAGTTTCATACAACTTTTATTTTACTATACCTT TTGAGTTTCTTCCGGGGGGGGGGGAGGGGAGGCGATATTGACGACGTGAA GCTGGGAGGTAGCGGAGGGGAGGGAGGCGGTATTGACGACGCGGGAAGCT CGGAGACATATTATGTATTCAGCGCAATACCTACCAATGGCTGGCGGTGT TTGTTCTTTTTTTTTTGCACACATCATGATTCTATTGGAGTGTACAAAAT GTATTCGCTTTCCCGGGCTGCCCGATATTTTATCCCCCCTCCCTCTCGAG TTACAACGCAGTATCACGGTTTTCATGGGGCAACTCTTACGATATTCAAC AATCACATCCCGTGAAGTTCATGCACCTCTCTGTTATCCCTCTAAACCTC CCCCCGGTACCTCCGCGACTGCAGAAGGCCTACGTAAAAGTGGCCGACAT CGCGGCGGTGGCTCAGCGTAAGGGGATATCAAATTGTGGCAGCGTGGCTG GTCTAAAGAACGTATGCGGAGCGTTCTTGGACTTGATAACGGCCTGTAGT GCGAGCTCATTCATGGTGCGGGCTAAATCGTTCACGGAAGCTGAGCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig168:108103..108950-

>mRNA_P-littoralis_Contig168.22.1 ID=mRNA_P-littoralis_Contig168.22.1|Name=mRNA_P-littoralis_Contig168.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig168:108103..108950- (Pylaiella littoralis U1_48)
ATGATACGCTTCTTGCTGAATGCACTCAACACCGACGGATCGGCGCTCGT
TTCCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACGCGGAGCCGC
TGGGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGACTGGAAACCAG
ATCTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGGCCTATTTTCGC
CAACCACATGTCCATGAAGGCCTACGTAAAAGTGGCCGACATCGCGGCGG
TGGCTCAGCGTAAGGGGATATCAAATTGTGGCAGCGTGGCTGGTCTAAAG
AACGTATGCGGAGCGTTCTTGGACTTGATAACGGCCTGTAGTGCGAGCTC
ATTCATGGTGCGGGCTAAATCGTTCACGGAAGCTGAGCTA
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