mRNA_P-littoralis_Contig167.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.13.1
Unique NamemRNA_P-littoralis_Contig167.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.080e-35
Identity = 88/173 (50.87%), Postives = 108/173 (62.43%), Query Frame = 1
Query:    1 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVS 516
            M R   N+ +TFSAT+TA ++E  A+L QRRK M +AW  ++ GW  L QC    GIT     QEGM+RLNVGG H+   R VL+GK  E S  W LGNLFE   D RLPRDSDGR VL++SP+ VK L+HSL   S AA GS   G      L  +E   YL +V R+LG+S
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGK-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGET----LAPDE-MAYLPHVARALGLS 167          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.400e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 1
Query:    1 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVSG 519
            M R +SN+K+TFSATL  S+R   A+L+QRR EMD  W  ID GWQ L++ MT +GIT     +EG+V+LNVGGL +   RSVL+ +  +    W LGNLFE + DKR+PRDSDG  VL+ESP+ VK LVH L   S++++ +     G  G     E    L Y    LG+SG
Sbjct:    1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPPTWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATV----GRAGDFARNEDPALLHYTAGVLGLSG 170          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.540e-33
Identity = 81/149 (54.36%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   73 ASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVS 516
            A L+QRRKEM +AW  +D GW  L QC    GIT  S  Q+GM+RLNVGG H+N  R +L G+  E S  W LGNLFE   D RLPRDSDGR VL+ESP+ VKHL+HSL   S AA GS   G      L ++E   YL YV R+LG+S
Sbjct:    3 AVLSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGR-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGDT----LALDE-MVYLPYVARALGLS 145          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7FIY4_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY4_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.000e-32
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSP-QEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGS 426
            M R +SN+++TFS  L ASARETN  L+QRRK MD+AW  ID GWQ LQ+ M  IGIT     +EG+V+LNVGG  +   RSV EGK    ++   LG+L E + DKR+PRDSDGR VL+ESP+ VK L H L    + A+G+
Sbjct:   65 MLRFQSNEQKTFSEILEASARETNDILSQRRKVMDQAWADIDEGWQALQEHMAKIGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGKGATS--ALGSLCEAEWDKRIPRDSDGRIVLDESPTCVKRLFHDLLTPPSLAKGT 205          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7FIX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX9_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.630e-26
Identity = 74/179 (41.34%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    1 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLE----GKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVSGQ 522
            M R  SN+K++FSAT+ A A ET A+L QR +               L++ MT +GIT     ++G+ +LNVGG  V+  RSVL     GK  +  + W L NLFE + DKR+P DSDGR VL+ESP+ VKHLVH L   S+ A  +    G V      ++    L Y  R LG+SG+
Sbjct:    1 MLRFHSNEKKSFSATMEAFALETEAALAQRWQXXXXXXXXXXXXXXXLRERMTQVGITTPLDSKKGIDKLNVGGSLVSFRRSVLSTEAGGKQQQQPSTWALENLFEAEWDKRVPGDSDGRIVLDESPTCVKHLVHGLLTRSSLAEDTAAREGEVA----CDDKLDLLDYTARVLGLSGR 175          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.980e-20
Identity = 62/179 (34.64%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    1 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSN-------EFGGGVVGGLTVEEGRPYLGYVGRSLGVS 516
            M R     ++ F  T +A  ++ NA+L      MD  W  ++ GW+R QQ +  +G+  ++  EG++RLN+GG+  NV RS++     E      LG LFE   D+R+PRD DGR VL+ESP+ VKH++H+L       R              G    +   E  PYL Y+   LG+S
Sbjct:    1 MLRRHFKQRDAFRETASAQIKQLNAALDLAISAMDEPWRDLENGWERHQQYLVDVGVRPTTGNEGVLRLNIGGVPANVHRSLIAEA--EGFKGSVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLLRGGCTTRTKETASLCHFRSAAGPSAAVAAHE-EPYLLYISHVLGLS 176          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: A0A6H5JCR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.470e-20
Identity = 68/173 (39.31%), Postives = 94/173 (54.34%), Query Frame = 1
Query:    1 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGI-TNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*-DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV 513
            MFR   N+ E F       A+E    L  R KE  + W  +D+GW+ L+  M   G+ T SS    +VRL+VGGL VN+  SVL  K    S++WTLG+LF+G   DKRLP   DGR VL+ESP  V+ ++      S+   GSN            ++ +PY+GYV  +LG+
Sbjct:    1 MFRHHPNEHECFLTATKTHAQELEELLEDRAKETKKEWDKLDSGWEALEFKMNETGMSTVSSFHPSIVRLDVGGLDVNIAWSVLREKVVASSSSWTLGDLFKGGVWDKRLPSPEDGRIVLDESPVCVEEILSDGA--SSKRSGSNNL---------PDDEKPYIGYVASALGL 162          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.900e-19
Identity = 55/125 (44.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   52 ASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGS 426
            ASAR T A+L+QRR+EMD+AW   D GWQ LQ  MT                              EGK ++ S+ W LG+LFE + DKR+PRD+DGR VL+ESP  VKHL+ +L +   AA G+
Sbjct:    3 ASARATEAALSQRRREMDQAWDDTDQGWQELQAHMT------------------------------EGKGEQPSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGT 97          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.450e-18
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  100 MDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEG-K*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV 513
            M + W  +D+GW+ L+  M   G++  SS Q  +VRLNVGGL VN+ RSVL    +  S+ WTLG+LFEG   DKRLPR  DGR VL+ESP  V+ L+      S+   G++ F          ++ +PY+G V  +LG+
Sbjct:    1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELLCDA---SSKRPGNSNF---------PDDEKPYIGGVASALGL 128          
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Match: D7FIU9_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.060e-16
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  100 MDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEG-K*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV 513
            M + W  +D+GW+ L+  ++  G++  SS     VRLNVGGL VN+ RSV     +  S++WTLG+LFEG   DKRLPR  DGR VL+ S   V+ L   L   +++ R  N         L V+E +PY+G V  +LG+
Sbjct:    1 MKKEWDTLDSGWEALESKISQAGMSMVSSIPPSFVRLNVGGLDVNIARSVFRKTGEASSSSWTLGDLFEGCVWDKRLPRSEDGRIVLDASAVCVEEL---LCDGASSKRSGNN-------NLPVDE-KPYIGGVASALGL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L232_9PHAE1.080e-3550.87TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LAP0_9PHAE2.400e-3547.70TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2H5_ECTSI1.540e-3354.36TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIY4_ECTSI3.000e-3253.15TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX9_ECTSI5.630e-2641.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G141_ECTSI2.980e-2034.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JCR8_9PHAE3.470e-2039.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX7_ECTSI4.900e-1944.00BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIV0_ECTSI5.450e-1842.14TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIU9_ECTSI2.060e-1640.71TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:47077..48392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1316
Hectar predicted targeting categoryother localisation
Exons1
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.8735414-UTR-P-littoralis_Contig167:47076..475661680789805.8735414-UTR-P-littoralis_Contig167:47076..47566Pylaiella littoralis U1_48UTRP-littoralis_Contig167 47077..47566 +
1680789805.894331-UTR-P-littoralis_Contig167:48058..483921680789805.894331-UTR-P-littoralis_Contig167:48058..48392Pylaiella littoralis U1_48UTRP-littoralis_Contig167 48059..48392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.8836427-CDS-P-littoralis_Contig167:47566..480581680789805.8836427-CDS-P-littoralis_Contig167:47566..48058Pylaiella littoralis U1_48CDSP-littoralis_Contig167 47567..48058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.13.1prot_P-littoralis_Contig167.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 47567..48058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.13.1

>prot_P-littoralis_Contig167.13.1 ID=prot_P-littoralis_Contig167.13.1|Name=mRNA_P-littoralis_Contig167.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
MWVVPSVCRDRGRRTSGWLGSESVKGGSTILRSSESGPLTSVLQGWCSGN
PSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGG
YSGVPVGRGHPSRAFLFMLKSGKSGDPTTFQPVQWGIGAGSVMLPHDLGL
SWSGNSCTVRSLT*
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mRNA from alignment at P-littoralis_Contig167:47077..48392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.13.1 ID=mRNA_P-littoralis_Contig167.13.1|Name=mRNA_P-littoralis_Contig167.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1316bp|location=Sequence derived from alignment at P-littoralis_Contig167:47077..48392+ (Pylaiella littoralis U1_48)
ATGTTCCGTGTGAAGTCGAACGATAAAGAGACGTTCTCAGCCACTCTGAC GGCCTCCGCCCGGGAAACAAATGCCTCCCTCACTCAGAGGCGAAAGGAGA TGGACCGGGCGTGGTACGGCATCGATGCGGGATGGCAGCGTCTCCAGCAA TGCATGACCGCTATTGGGATCACCAATTCCTCACCCCAAGAGGGCATGGT GCGACTGAATGTTGGCGGGTTGCACGTCAACGTTGATCGGTCTGTCCTGG AAGGGAAATATGATGAGTTATCTACTAATTGGACCTTGGGCAACCTTTTC GAAGGAAAGTAGGACAAGCGGCTTCCTCGGGATTCTGACGGCCGTTTTGT GCTTAACGAGTCTCCGTCTTTCGTGAAGCATCTGGTGCACTCCCTTTTTG TACACTCGGCAGCAGCAAGGGGCTCCAATGAATTTGGCGGCGGTGTCGTC GGTGGATTGACGGTTGAAGAGGGAAGGCCTTATCTTGGCTATGTGGGTCG TTCCCTCGGTGTGTCGGGACAGGGGCAGGCGCACAAGCGGGTGGCTCGGG TCGGAATCGGTGAAGGGTGGAAGTACGATACTCCGTTCCAGTGAGTCAGG CCCCTTGACTTCCGTATTGCAGGGCTGGTGTTCCGGTAACCCGAGTAGAC TTGGGCTGGTGTACCGTGCCTCACGCGATGACTGGAGTCCCAAGGCGTTC CTCGATGCTAAGCGCAATCGCAGCCCCTGCACGATCACTTTGATCAAGAT TGGGGATGGCGACGACAGCAGTGCTAGTATCGTCGGGGGATATTCAGGGG TACCCGTGGGCCGCGGGCATCCCTCGAGGGCCTTCTTGTTCATGCTCAAG AGCGGCAAGTCAGGCGATCCGACCACCTTCCAGCCCGTCCAGTGGGGCAT CGGGGCAGGTTCGGTGATGTTGCCACACGACTTAGGCTTATCGTGGTCCG GAAACTCGTGCACGGTGAGGAGCCTTACTTAGCAAAAACAAATATGAAAT ACCGGAGGGATCGCCCATCATTGGTGTCAAGGGGCAGATTACGTTGGAAG TTGAGGTATTCCGTGTGTGTCCCGAGGCTACAGAGATCCCTCCGGCCGAA ACCATACTCGACGTCGTTGACGACTCACAGGACGTCCCCAGATACGGGGT CTTGATCGCAGCCTTACTTGAAGAGAAAATGGCACTGCACCGAGCCGAAT TCGAACTTCGCCGTGCAACAGCCAGAGCCATTGCCTGCGCACACTCCTTG GCGGCCGTGTACGGCGAAGATATAGCAACGGGCAAGGAAGATCACGTTGT TGAGCTCAGCGTACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:47077..48392+

>mRNA_P-littoralis_Contig167.13.1 ID=mRNA_P-littoralis_Contig167.13.1|Name=mRNA_P-littoralis_Contig167.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig167:47077..48392+ (Pylaiella littoralis U1_48)
ATGTGGGTCGTTCCCTCGGTGTGTCGGGACAGGGGCAGGCGCACAAGCGG
GTGGCTCGGGTCGGAATCGGTGAAGGGTGGAAGTACGATACTCCGTTCCA
GTGAGTCAGGCCCCTTGACTTCCGTATTGCAGGGCTGGTGTTCCGGTAAC
CCGAGTAGACTTGGGCTGGTGTACCGTGCCTCACGCGATGACTGGAGTCC
CAAGGCGTTCCTCGATGCTAAGCGCAATCGCAGCCCCTGCACGATCACTT
TGATCAAGATTGGGGATGGCGACGACAGCAGTGCTAGTATCGTCGGGGGA
TATTCAGGGGTACCCGTGGGCCGCGGGCATCCCTCGAGGGCCTTCTTGTT
CATGCTCAAGAGCGGCAAGTCAGGCGATCCGACCACCTTCCAGCCCGTCC
AGTGGGGCATCGGGGCAGGTTCGGTGATGTTGCCACACGACTTAGGCTTA
TCGTGGTCCGGAAACTCGTGCACGGTGAGGAGCCTTACTTAG
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