mRNA_P-littoralis_Contig166.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig166.38.1
Unique NamemRNA_P-littoralis_Contig166.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig166.38.1 vs. uniprot
Match: A0A6H5K6V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.580e-12
Identity = 80/216 (37.04%), Postives = 95/216 (43.98%), Query Frame = 1 
Query:   76 MGASPYASPLPYGEWALSLVILVGGFYWVRAEETATKCRTRDSGPAGRRQTAEGENKEQQEQEDGAWGGRTSSSAYQTDYEADRMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFPVTRAAVDATRAVEKSHLDYVVDRADRWRLEKEAFRIRVQQHVGRELDR 723
            M  SPYA PLPYG WALSL IL+GGF+W RAE  +    +   G A RRQT EG+ +EQ E+   A   RTSS                         XXXXXXXXXXXXXXXXX                                                   F           A  K H ++VV+  DRWRLE+EAFR++V +HV REL+R
Sbjct:    1 MSLSPYARPLPYGGWALSLTILLGGFFWARAEGISVAGSSHRDGQANRRQTQEGDEEEQPEETRSAH--RTSSXXX----------------------XXXXXXXXXXXXXXXXXRRYSNQRSLFARVRPTPLSLTPPLPWQTTAAAVDGEETYIRRDAAPAALSGFCAXXXXXXXXXATRKPHFNHVVEPTDRWRLEREAFRVKVHEHVDRELER 192
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BLAST of mRNA_P-littoralis_Contig166.38.1 vs. uniprot
Match: D8LSI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.330e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  604 TRAVEKSHLDYVVDRADRWRLEKEAFRIRVQQHVGRELDR 723
            T A+ KSH  +VV+R DRW LE+EAFR++V +HVGREL R
Sbjct:   94 TSAIRKSHFSHVVERTDRWCLEREAFRVKVHEHVGRELAR 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6V4_9PHAE1.580e-1237.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI9_ECTSI5.330e-662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:237741..240776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1713
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_001810.1
Cds size690
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789802.8750672-UTR-P-littoralis_Contig166:237740..2378151680789802.8750672-UTR-P-littoralis_Contig166:237740..237815Pylaiella littoralis U1_48UTRP-littoralis_Contig166 237741..237815 +
1680789802.9233398-UTR-P-littoralis_Contig166:239828..2407761680789802.9233398-UTR-P-littoralis_Contig166:239828..240776Pylaiella littoralis U1_48UTRP-littoralis_Contig166 239829..240776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789802.8930614-CDS-P-littoralis_Contig166:237815..2380581680789802.8930614-CDS-P-littoralis_Contig166:237815..238058Pylaiella littoralis U1_48CDSP-littoralis_Contig166 237816..238058 +
1680789802.9065335-CDS-P-littoralis_Contig166:239381..2398281680789802.9065335-CDS-P-littoralis_Contig166:239381..239828Pylaiella littoralis U1_48CDSP-littoralis_Contig166 239382..239828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.38.1prot_P-littoralis_Contig166.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig166 237816..239828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig166.38.1

>prot_P-littoralis_Contig166.38.1 ID=prot_P-littoralis_Contig166.38.1|Name=mRNA_P-littoralis_Contig166.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=230bp
MGASPYASPLPYGEWALSLVILVGGFYWVRAEETATKCRTRDSGPAGRRQ
TAEGENKEQQEQEDGAWGGRTSSSAYQTDYEADRMQQQNHQQQHIVGRRH
DNRQNNLLMAIRAGLSSPPTLLCGAEQTAAVAGGEECANQTRASSPSAAA
AAALEVEAAAASSGGAFPVTRAAVDATRAVEKSHLDYVVDRADRWRLEKE
AFRIRVQQHVGRELDRKNRRDRRCIGLDW*
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mRNA from alignment at P-littoralis_Contig166:237741..240776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig166.38.1 ID=mRNA_P-littoralis_Contig166.38.1|Name=mRNA_P-littoralis_Contig166.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3036bp|location=Sequence derived from alignment at P-littoralis_Contig166:237741..240776+ (Pylaiella littoralis U1_48)
ATTGCGTTCAACGCTGAACCATAATTTTTACCGTTCCTGTGTGATCCTTT
CTCTGCCTAACTGCCGCTACTTATCATGGGTGCTAGCCCGTACGCTTCTC
CTTTGCCTTATGGAGAATGGGCTCTCTCACTTGTTATCCTAGTAGGAGGC
TTCTATTGGGTGAGGGCGGAAGAAACGGCAACCAAATGTCGTACAAGAGA
CAGCGGTCCAGCAGGCCGGAGGCAGACAGCGGAAGGAGAGAATAAGGAGC
AGCAGGAGCAGGAGGACGGGGCCTGGGGGGGGCGAACGTCTTCTTCAGCT
TATCAGACAGATTATGAGGTATGGCTGCTCAAGGCTGAGACATGCAACAA
TCGATCTCCAGAAGGTATCGGTGGGGCAAAACATTCAACAGCAGTGTACT
ATTGTACAGCATTCATTGTGGACGTGAATGAACCGTGAGTCAATACGATC
CCACACCTCTAACCCCGGGCCGATTTCACACCTGGTAAAAGAGTGTTGGT
GCCCATGAGGACCGCTGGCGTCGGTCTCGTCAAGAGCTTCCCGGAAACGT
GCCTGTAGGCATGAGTTGATCTTGGCAACCTCTTCTACGTTGTTTGATGC
AGTATTACTGTATTGACGTTCGAGTTGAAAACCGGGTACTGGGGGCATGG
TGTCTTTCACGTGACCAACGGTACCCGTAGACGGCGAGAGAGGGAGGTGG
GGAACCTCCGTCGTCTTCGAGTAGGATGATGATCCGGCGGTTGACGTAAG
GGTGGATCTTTATTCGCAGTATGGTGTCGGTTCGTGCTGCACAATTTTGC
CGTAAATAATACTTCAAGTAGCTGGTATTCTCTTGTACAGGACTGCTGTA
CTGGAGGCCTACCGGCAACCATCGTACGAAGCAAAGCAGTTTAACTAGAG
CTCTATACCCCACCTTCGACCTTGCGCTTTTGTTTTAGCTGATGTACCGG
TCCTACAACAACCTGTCATACAACAACAGTCCTACGGAGAACTCCCAGCA
CTGCTGTGTGTCGGTGGAGAGCGGCTGCTACAGGAAAAATATTTTGCGGT
TATCCATTCTATATATGGTGCAGAAAGTTCCTCCATAGGGTGAAGCACAG
CTATGGTCATTTTCTATGAATCTGTCGTTCTTGTAGCGGATTGTTGGGTA
TTTTCGATTCGGAGGAAGGTACGCCGCGGGGCATGGAGGGAGGGCATATA
CCTCATACAGCAGTAGTACCACTTCCTACTGTCAGATAAACTAAAAAAGT
TAGTACTTAGGCGGTTACCTTGTTTTGTCATGGATGCATTGGTGTGACAT
TAGTAGGTCGTGCGACGTACTGCTTTGTGTGCCTCGTACTTCGTGCGCTT
CAGCTGCTGCTGCATCGTTGCGTGCCCCATTATTACGTTTGAACATCAGC
ACGTGTTCGTCCAACTGTTATTTATTGGATCTTCGGCAGCAAATACGGCT
CTTTGCTGTTGCTGCGCTTTGCATACGGTTCATCGGTGCTTTCAATGCAT
GTGCACCACGAATGGACTGCGGAAGTGGCATTCCGGGCATACTCCCTGTA
CGTGCAAGTAGATGCGCCAAAAAGATGCTTTGTGATCATATGAGATCATG
AGTGCAATTTTCTTATTTTTTTACACGTTTCGCGCGACTAGGCGGACCGA
ATGCAACAACAAAACCACCAGCAGCAGCACATCGTAGGACGGAGACACGA
CAACAGGCAAAACAATTTACTTATGGCGATACGAGCAGGGTTATCATCGC
CGCCAACGCTGTTGTGTGGTGCGGAGCAGACGGCAGCAGTAGCGGGCGGG
GAGGAATGCGCCAATCAAACGAGAGCATCATCACCATCAGCCGCAGCAGC
AGCAGCATTAGAGGTAGAAGCAGCAGCAGCATCCTCAGGAGGAGCGTTTC
CCGTCACCCGTGCAGCTGTTGATGCCACACGCGCGGTTGAAAAATCACAC
TTGGACTACGTGGTTGACCGCGCAGACCGTTGGCGCTTGGAGAAAGAGGC
GTTCAGGATAAGGGTGCAACAGCACGTTGGGAGGGAATTAGACAGAAAAA
ATCGTCGAGACCGCAGGTGCATTGGCCTCGATTGGTGATGACACGCTAAG
AGGGAAAGGGCTCGTGGCGAGCGCTGCTGCGGTTGGTGATGCTCTTGTCT
GTTGGCGAGGTCTAGTGATGGCTCGATTTCTTCACCCGATATCCAATCAT
CTGAACGAGGGGTTCAGACGTTGGTTGGTTCGCTTCTTGGCTGTGACAAC
TCGACATACCATACTCCTTCGTGCGGTCTGGGTGGTGAGGTGTTCTTCGA
TCTAGAGCAGCAATGGACTTTGGTTCCTGTTGGGTGTTGGCTATGACAGC
GCTGTCATACAACAACCACGACGGTATTGACCGCTCTGGTCTGCTGCCGG
TTGGTGTTAATACGTTCACAATATACGCATGCATGGCCTGAAAATCTCCG
ATAGGTGTCCTAAAAGCTTCACGGAGAGCAAAAGGGTCAAGAGGCTAGCA
TTTGAGTTGTACGCGATTCCGTCGGCGTGGCCTGCCTGTCTCTGCATGTC
TTTAGGTGTATGTTTGTCGGATGCGTGAGAGGCCGCGAGTATACGTCGTA
AGTCGAGATCGGCTTTCGAGACCGGATCGGTCTCGGTCAAAGGGGGGTGG
TTGGGATATCAAAATGTCAAGGTGATCGACAAGACAGAAGATTTGGAATG
TAGAAAAATCAGTTAAAAGCCAAAAAAATCTTCCTGTCCTGAAAAAAAAA
GGAGGATTTGCGAACCCCTCTTGGTCAACTTTGCCGGAAAAGGATGTGAC
TTATTTTTATCCGTATTTTGAAGGAAGATACTCTCGACTGCTGTGTTCCT
TGCCTTGTTTCACAAGGCCTCACCTCGGACAGTTGTCGCTGCCGGCGTTG
ATCTCTCGCAGCTGTTGGGCTATCGTACCGTCGCGGCATGGTTGACAAGC
GTCCAATCGTTGTCGCGAATAGATTTCTTGAGTGCTCGCTGACTGCCTTA
CGCTGACGAGGCACAATCAAGTCTCAGGCAGACAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig166:237741..240776+

>mRNA_P-littoralis_Contig166.38.1 ID=mRNA_P-littoralis_Contig166.38.1|Name=mRNA_P-littoralis_Contig166.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=690bp|location=Sequence derived from alignment at P-littoralis_Contig166:237741..240776+ (Pylaiella littoralis U1_48)
ATGGGTGCTAGCCCGTACGCTTCTCCTTTGCCTTATGGAGAATGGGCTCT
CTCACTTGTTATCCTAGTAGGAGGCTTCTATTGGGTGAGGGCGGAAGAAA
CGGCAACCAAATGTCGTACAAGAGACAGCGGTCCAGCAGGCCGGAGGCAG
ACAGCGGAAGGAGAGAATAAGGAGCAGCAGGAGCAGGAGGACGGGGCCTG
GGGGGGGCGAACGTCTTCTTCAGCTTATCAGACAGATTATGAGGCGGACC
GAATGCAACAACAAAACCACCAGCAGCAGCACATCGTAGGACGGAGACAC
GACAACAGGCAAAACAATTTACTTATGGCGATACGAGCAGGGTTATCATC
GCCGCCAACGCTGTTGTGTGGTGCGGAGCAGACGGCAGCAGTAGCGGGCG
GGGAGGAATGCGCCAATCAAACGAGAGCATCATCACCATCAGCCGCAGCA
GCAGCAGCATTAGAGGTAGAAGCAGCAGCAGCATCCTCAGGAGGAGCGTT
TCCCGTCACCCGTGCAGCTGTTGATGCCACACGCGCGGTTGAAAAATCAC
ACTTGGACTACGTGGTTGACCGCGCAGACCGTTGGCGCTTGGAGAAAGAG
GCGTTCAGGATAAGGGTGCAACAGCACGTTGGGAGGGAATTAGACAGAAA
AAATCGTCGAGACCGCAGGTGCATTGGCCTCGATTGGTGA
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