mRNA_P-fluviatile_contig22.4785.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4785.1
Unique NamemRNA_P-fluviatile_contig22.4785.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 3.870e-37
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 MDTGYRSSKGVLITCDVPTKQFILSLDARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRPRT 210
            M TGYRSSKGVLITCDVPTKQFI+SLDARLACVVSDLDATH+FVK DS+KEIQREL+QLHEKNVYVRPRT
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.020e-14
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   19 SSKGVLITCDVPTKQFILSLDARLA--CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVR 201
            S KGVLITCDVPTKQFIL L+++ A   +++DLD TH+FV+  ++ EI+ +L++L E NVYVR
Sbjct:    7 SRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 62.4 bits (150), Expect = 1.250e-8
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 SSKGVLITCDVPTKQFILSLDARLA--CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYV 198
            ++ GVLI+CD+P KQF+L +D +     ++SDLD TH+ VK  ++  I+ +LD+L+E+N Y 
Sbjct:   50 ATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 60.1 bits (144), Expect = 2.740e-8
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   25 KGVLITCDVPTKQFILSLDARLA---CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVY 195
            +GVLITCD+P KQFIL LD   A    V+++LD T +F+++ ++K +Q +L++L+E+N +
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 59.3 bits (142), Expect = 5.860e-8
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   19 SSKGVLITCDVPTKQFILSLD-----ARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRP 204
            ++ G L+TCDVPTK+F++ L+      + A ++ +LD TH+ VK D ++ +Q ++   + KNVY  P
Sbjct:    4 ATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: I0Z2U2_COCSC (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2U2_COCSC)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-7
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   25 KGVLITCDVPTKQFILSLD----ARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRPR 207
            +GVL+ CDVPTK+FILSL+         V+ DLD T +FV+   ++ +++ L + +E+N Y  PR
Sbjct:    2 RGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEENTYQPPR 66
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A6T6HXU1_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HXU1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.710e-7
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   19 SSKGVLITCDVPTKQFILSLDARLAC----VVSDLDATHIFVKTDSIKEIQRELDQLHEKNVY 195
            +S G LITCDVPTKQ+I  L+   A     ++ DLDATH+ VK  +  EI+R ++   ++NV+
Sbjct:   36 ASAGYLITCDVPTKQYIQYLNEMKAVDKKFIIEDLDATHLLVKKKARAEIERRVESWMDENVF 98
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 54.7 bits (130), Expect = 2.310e-6
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   19 SSKGVLITCDVPTKQFILSLDARLA---CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVY 195
            ++ GVL+TCDVP KQF+L LD   A    +V+ LD TH+F+   ++  I+ +L++L  +N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A4S7H4_OSTLU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7H4_OSTLU)

HSP 1 Score: 53.1 bits (126), Expect = 9.490e-6
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   28 GVLITCDVPTKQFILSLD----ARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRP 204
            GV+IT DVP KQ+IL L+    A    VV DLDA  + V+ D++  I RE++   +   YV P
Sbjct:    7 GVMITADVPIKQYILHLNDVAPAERKFVVVDLDARRVLVQPDAVDAIHREIEAFQQSTQYVAP 69
[Close]
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A7R9C1N4_9CRUS (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9C1N4_9CRUS)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-5
Identity = 22/59 (37.29%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   22 SKGVLITCDVPTKQFILSLDARLAC----VVSDLDATHIFVKTDSIKEIQRELDQLHEK 186
            SKGVL+TCD P +QF++ LD +       ++ DLD+TH+F+  D + E+  ++D+  ++
Sbjct:    5 SKGVLVTCDPPMRQFLIWLDEKEKLGRKFILLDLDSTHLFISADVVNELMEKVDEWMDR 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G710_ECTSI3.870e-3791.43General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA1.020e-1457.14General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR1.250e-843.55General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU2.740e-845.00General transcription and DNA repair factor IIH su... [more]
A0A383WPN6_TETOB5.860e-837.31General transcription and DNA repair factor IIH su... [more]
I0Z2U2_COCSC3.650e-741.54General transcription and DNA repair factor IIH su... [more]
A0A6T6HXU1_9STRA9.710e-744.44General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM2.310e-641.94General transcription and DNA repair factor IIH su... [more]
A4S7H4_OSTLU9.490e-642.86General transcription and DNA repair factor IIH su... [more]
A0A7R9C1N4_9CRUS1.240e-537.29General transcription and DNA repair factor IIH su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:651170..654119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
Exons3
Model size966
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4785.1prot_P-fluviatile_contig22.4785.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 651170..653366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815969.3326764-CDS-P-fluviatile_contig22:651169..6512131622815969.3326764-CDS-P-fluviatile_contig22:651169..651213Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 651170..651213 +
1693563904.1607194-CDS-P-fluviatile_contig22:651169..6512131693563904.1607194-CDS-P-fluviatile_contig22:651169..651213Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 651170..651213 +
1622815969.3439295-CDS-P-fluviatile_contig22:652260..6523741622815969.3439295-CDS-P-fluviatile_contig22:652260..652374Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 652261..652374 +
1693563904.178315-CDS-P-fluviatile_contig22:652260..6523741693563904.178315-CDS-P-fluviatile_contig22:652260..652374Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 652261..652374 +
1622815969.3556828-CDS-P-fluviatile_contig22:653311..6533661622815969.3556828-CDS-P-fluviatile_contig22:653311..653366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 653312..653366 +
1693563904.1893518-CDS-P-fluviatile_contig22:653311..6533661693563904.1893518-CDS-P-fluviatile_contig22:653311..653366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 653312..653366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815969.366666-UTR-P-fluviatile_contig22:653366..6541191622815969.366666-UTR-P-fluviatile_contig22:653366..654119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 653367..654119 +
1693563904.1982229-UTR-P-fluviatile_contig22:653366..6541191693563904.1982229-UTR-P-fluviatile_contig22:653366..654119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 653367..654119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4785.1

>prot_P-fluviatile_contig22.4785.1 ID=prot_P-fluviatile_contig22.4785.1|Name=mRNA_P-fluviatile_contig22.4785.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=71bp
MDTGYRSSKGVLITCDVPTKQFILSLDARLACVVSDLDATHIFVKTDSIK
EIQRELDQLHEKNVYVRPRT*
back to top

mRNA from alignment at P-fluviatile_contig22:651170..654119+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4785.1 ID=mRNA_P-fluviatile_contig22.4785.1|Name=mRNA_P-fluviatile_contig22.4785.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2950bp|location=Sequence derived from alignment at P-fluviatile_contig22:651170..654119+ (Porterinema fluviatile SAG_2381)
ATGGACACGGGGTATCGAAGCAGCAAAGGAGTTCTAATAACCTGGTGAGA
TACGATCGTTTAGTTCTTCGTGCAACACAACCATAACGCTACCGGGAGCG
GCTCGAAAAGTATCTCCCGCACAAGCCTATTTTTATGAACCTCTCGTTAG
AGTTGCGTGAGCTATTCGGTCCCCATTTTTGCGAATCGGGAAAGAGTAGC
ACATATGCAGGCCAATCGACGCTGAATCTCGCGTCCGGAGCACGGGCGCT
GCTGCTGTCGTGTTACAGAGTAACAGCACAAACGCCCCCTTCAATATAAT
ATGCATTCGGGGGATAATTTTGTCCGCACACCAGCAGGACTCTCACTGGA
GCTCTCAAAACCTAGTTTATTGCCGTGTAAGCAATAGAGGGTTACTGTAT
AGCCGTCTCACCACGCAACAATCGTGCCGGGTGATCTGCGCGTCCAGTTT
GACCGCAGCTAGTAGGCACAGATGGTTCGGCGTTCGCCTTTGTGGCGCTC
GATCACCTTTTAATCGACGTGACCAGTCGAGCTCACAGTCCGCAGCTTGC
TGCAGTTTTAGGGATAGTCTAGAGGCATCAAAAATGCAAAACTGTGTTCA
ACATCTATTGAAATTTTCTATCCGGGTTTGGAAGTTTCAAGCGTCGTTCC
CGATTGCATATTGCATATCTATACTCTCCCATCGGTACACACAAGTCGCC
CACCTCTCGGAAAGGCGCCAAGCAATGTCGAACCTCCTCTATGGCAAGAG
TGCGCTCGTTGATTCAACGTCAAAGCATCTAGACTTCACCCACAATGTGG
TGTGAAATGTTTTTATGGCAAACACTTTGATTCTGGCAACGGCGAAGAGC
TTGGTCAATGATGGGGATGCCTTCATCCTTCTCGGACCCAGAGCTGTTGT
ACACTTGCCTCGAACAGTATGGACTTGGATATTAATGTGCTTTCTGTAAA
ACTCGAAATACTTCCAACATTTTTCGTGGATGTGGCGGGCTGCCCACATT
CAGTGGTTATACTGATGCTGTGTAGTTGGCGTCACGTGATATCCTCATAT
GGTGCTGCTGTTCGTGCTTTATCTGCGCCCTTGTCTTGCAGCGATGTGCC
GACCAAGCAGTTTATCCTGAGCCTGGATGCGCGGCTGGCGTGCGTTGTAT
CGGATCTCGATGCTACCCACATTTTCGTGAAAACGGACAGCATTAAAGAG
ATACAGTGAGTACAACCGCTCTCTTGGATTTCAATTTGATGGCCCCATTC
AGGAACAACATAGCGTTATGATCACTGTTTCACCACCGAAATGAGATTTT
TTTTTGCGACGATGCCGACAGAGGATCAAATAAAGTCAAGATACTCTCAG
AAATGCACCCTGCCCGCCATCCGTCTGAACGGGGAGCAACTTGCTATATG
TATGTTGGGATGTAAACCTGTGTAGGTTGTATCCCTTGGCACTGATCACT
GTATGGAACAGTGTTGGTGCAGAGGCTCACTGAGTGATCGTGAAATCACT
TGGGTATACAGAATGGTTTTGGATTGGCGCTTAGATGGCCGAAAGGTAGA
GACAGGTAAGATGGGGAGAAAATGAGGAGTGAGCAGGTGGGGCGAACACC
ACGAGGGGTGAGCCCTTCACCTATCACGGGAGAATGCCACACTCGGACTA
TTGCTATCCATCCGATAATCGGCTGGTCCGACGGTATCGCAATATCCTAG
AATATCCTAGTGGATATGTACTGCTAAATATATAGCTATGGCTATGCTTT
GTCCCGTGGTTGTGTACAACCTTCCGGTCACTCAATACAATTAGCCGAAG
ACTATTCCAGTAATAGTTACTGGGCTCCTATGGCTTAGGGCCAAGTATGG
TAGCGTACAGCAGTACCAATACTGTGATGACTGAACATTGAATACTCCAA
CAATGTAACCACCCGCCTCACCGTGAGAGTGTGCCAGCCCCACCGTGCAG
GTACGGCGGCAGCACTTGTAGCACACACTCGCGTATATTTGCAGAATACT
CTCCAGGTGCACACAGCATGCCTACTTCTGGGGTATTGTTCACTAAAAAT
GATTTGGATGGGCCGCCGTCTTTCTCCCTGCCTCATTTCGACTACAACCT
CAACCAATGACCGCGATCCATTATGGCTTGCCCCGATTGCAGGCGCGAGC
TGGACCAGCTGCACGAGAAGAACGTCTACGTGCGCCCTCGAACATAAAAT
GGGGGTGGAGCCTCGGGGCACAGCCCTGTTGGGAAACTTGCACTGTATAC
ATGTAGCACCGAGGGTGCGCAGCTTGCCGCCATTCGTATCACCGAGAAAC
TGCATGTTTGAAAGCTCTCTGGCGAGCTTCAAGGCAAAAATACAAACTTT
TGCCGAATTGAGATTTATCCTAGGCTGGGGTTGGCTAAGGGTAGGCGCGC
GAAACGCTTCCGTCGGAGGGAGAACCAGGAGGATGGTCGGTGTATGCTAC
CGTGGCAACCTTGAGAGTACAAGAGAAGGGCACCAAGATCTAGCGTGACC
TGAGTATCCCACCATGACATCGAATTGGTTCTGTTGTTGTTTTCGTTTGA
GCAATCTCAGGGACAGCTGCGCCCGAGGTCATGCAACAGTTTACGTGGGG
GGGGTGCTTGCGATTCGAAACCGTTGTGGCTTGTGACGTCAACATTGCTG
ATCTGCCGGTTTATACACTTTTTCTCCCTTATGCCATGCATCCATGGTAA
CTTCGTTTCTGTTGGTCCACGCTGACTCCAAGCACGACCGGTGCAAGCCG
AGAAGTTGGATAATCAAGAAAGTTTACCGTCGCCAAACCCCTCGAGTTCA
TTTTAGGTCAAAGGCGTAGAAGTCTCGCTGCAAGGCAACGGTGTGTTGGA
GTCGGACCGAAGGTCAAAACAACAATGGGGCAATATACCCCTCGTGGGCA
AGGTTGATCCCCCCCCACCGAAGGAGCCCATGTGTACGAATACGACAAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig22:651170..654119+

>mRNA_P-fluviatile_contig22.4785.1 ID=mRNA_P-fluviatile_contig22.4785.1|Name=mRNA_P-fluviatile_contig22.4785.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=426bp|location=Sequence derived from alignment at P-fluviatile_contig22:651170..654119+ (Porterinema fluviatile SAG_2381)
ATGGACACGGGGTATCGAAGCAGCAAAGGAGTTCTAATAACCTGATGGAC
ACGGGGTATCGAAGCAGCAAAGGAGTTCTAATAACCTGCGATGTGCCGAC
CAAGCAGTTTATCCTGAGCCTGGATGCGCGGCTGGCGTGCGTTGTATCGG
ATCTCGATGCTACCCACATTTTCGTGAAAACGGACAGCATTAAAGAGATA
CACGATGTGCCGACCAAGCAGTTTATCCTGAGCCTGGATGCGCGGCTGGC
GTGCGTTGTATCGGATCTCGATGCTACCCACATTTTCGTGAAAACGGACA
GCATTAAAGAGATACAGCGCGAGCTGGACCAGCTGCACGAGAAGAACGTC
TACGTGCGCCCTCGAACATAAGCGCGAGCTGGACCAGCTGCACGAGAAGA
ACGTCTACGTGCGCCCTCGAACATAA
back to top