prot_P-fluviatile_contig22.4785.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig22.4785.1
Unique Nameprot_P-fluviatile_contig22.4785.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length71
Homology
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.500e-40
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0
Query:    1 MDTGYRSSKGVLITCDVPTKQFILSLDARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRPRT 70
            M TGYRSSKGVLITCDVPTKQFI+SLDARLACVVSDLDATH+FVK DS+KEIQREL+QLHEKNVYVRPRT
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.610e-17
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFILSLDARLA--CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVR 67
            S KGVLITCDVPTKQFIL L+++ A   +++DLD TH+FV+  ++ EI+ +L++L E NVYVR
Sbjct:    7 SRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 1.940e-10
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFILSLDARLA--CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYV 66
            ++ GVLI+CD+P KQF+L +D +     ++SDLD TH+ VK  ++  I+ +LD+L+E+N Y 
Sbjct:   50 ATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 59.3 bits (142), Expect = 3.780e-10
Identity = 29/63 (46.03%), Postives = 47/63 (74.60%), Query Frame = 0
Query:    9 KGVLITCDVPTKQFILSLDARLA---CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRP 68
            +GVLITCD+P KQFIL LD   A    V+++LD T +F+++ ++K +Q +L++L+E+N Y +P
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEEN-YFQP 67          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 58.2 bits (139), Expect = 1.220e-9
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFILSLD-----ARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRP 68
            ++ G L+TCDVPTK+F++ L+      + A ++ +LD TH+ VK D ++ +Q ++   + KNVY  P
Sbjct:    4 ATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: I0Z2U2_COCSC (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2U2_COCSC)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-8
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0
Query:    9 KGVLITCDVPTKQFILSLD----ARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRPR 69
            +GVL+ CDVPTK+FILSL+         V+ DLD T +FV+   ++ +++ L + +E+N Y  PR
Sbjct:    2 RGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEENTYQPPR 66          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A6T6HXU1_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HXU1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.340e-8
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFILSLDARLAC----VVSDLDATHIFVKTDSIKEIQRELDQLHEKNVY 65
            +S G LITCDVPTKQ+I  L+   A     ++ DLDATH+ VK  +  EI+R ++   ++NV+
Sbjct:   36 ASAGYLITCDVPTKQYIQYLNEMKAVDKKFIIEDLDATHLLVKKKARAEIERRVESWMDENVF 98          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 53.5 bits (127), Expect = 7.190e-8
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFILSLDARLA---CVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVY 65
            ++ GVL+TCDVP KQF+L LD   A    +V+ LD TH+F+   ++  I+ +L++L  +N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A0A7R9C1N4_9CRUS (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9C1N4_9CRUS)

HSP 1 Score: 52.0 bits (123), Expect = 3.200e-7
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    8 SKGVLITCDVPTKQFILSLDARLAC----VVSDLDATHIFVKTDSIKEIQRELDQ 58
            SKGVL+TCD P +QF++ LD +       ++ DLD+TH+F+  D + E+  ++D+
Sbjct:    5 SKGVLVTCDPPMRQFLIWLDEKEKLGRKFILLDLDSTHLFISADVVNELMEKVDE 59          
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Match: A4S7H4_OSTLU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7H4_OSTLU)

HSP 1 Score: 52.0 bits (123), Expect = 3.350e-7
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0
Query:   10 GVLITCDVPTKQFILSLD----ARLACVVSDLDATHIFVKTDSIKEIQRELDQLHEKNVYVRP 68
            GV+IT DVP KQ+IL L+    A    VV DLDA  + V+ D++  I RE++   +   YV P
Sbjct:    7 GVMITADVPIKQYILHLNDVAPAERKFVVVDLDARRVLVQPDAVDAIHREIEAFQQSTQYVAP 69          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G710_ECTSI2.500e-4091.43General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA5.610e-1757.14General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR1.940e-1043.55General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU3.780e-1046.03General transcription and DNA repair factor IIH su... [more]
A0A383WPN6_TETOB1.220e-937.31General transcription and DNA repair factor IIH su... [more]
I0Z2U2_COCSC1.310e-841.54General transcription and DNA repair factor IIH su... [more]
A0A6T6HXU1_9STRA2.340e-844.44General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM7.190e-841.94General transcription and DNA repair factor IIH su... [more]
A0A7R9C1N4_9CRUS3.200e-740.00General transcription and DNA repair factor IIH su... [more]
A4S7H4_OSTLU3.350e-742.86General transcription and DNA repair factor IIH su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 4..67
e-value: 2.7E-16
score: 70.1
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 6..66
e-value: 1.7E-22
score: 79.2
IPR009400TFIIH subunit TTDA/Tfb5PANTHERPTHR28580FAMILY NOT NAMEDcoord: 8..68
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 2..67
e-value: 8.1E-22
score: 78.6
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 9..67
NoneNo IPR availablePANTHERPTHR28580:SF1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 8..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:651170..653366 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4785.1mRNA_P-fluviatile_contig22.4785.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig22 651170..654119 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig22.4785.1 ID=prot_P-fluviatile_contig22.4785.1|Name=mRNA_P-fluviatile_contig22.4785.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=71bp
MDTGYRSSKGVLITCDVPTKQFILSLDARLACVVSDLDATHIFVKTDSIK
EIQRELDQLHEKNVYVRPRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
IPR035935TFB5-like_sf