mRNA_P-fluviatile_contig1.362.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.362.1
Unique NamemRNA_P-fluviatile_contig1.362.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.362.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 2.350e-67
Identity = 147/294 (50.00%), Postives = 173/294 (58.84%), Query Frame = 2 
Query:  263 MQSVVLIGDSCGVSDRSRTPGPAKGDRHLIPLGLIHKPPS-EGGSGGAGIDGADAHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPVLVLFPATLDLAIFVSAPPLGETLVSALLTLLAIVGSRAWGWGMVSTTGLSSGVXXXXXVGLGVRSRPVGGWGFPALSMVGIALLGGGLASTALAFSLALSTLWRSGWWLYLQPECAPVLFMLSGVTADVAMGFLLASLLQIHRTPPRQQEQSAASTSMALPLPDESTATVSAHATPRVLQGEMWNAVTPPGLSGLRGRR 1141
            MQS+VL+ D    +  + T GPAKGDR L+PLGLI KPP+ E G+G        A                                    GPPV+VLFPATL L+IF++ PP   TL S +LTLLAI+GS      +VS  G+ SG+      GLGVRSRPVGGWGF  LS++GIALLGGG AS     SL LSTLWR GWWLY+QPECAPVLF+LSG TADVA+GFLL SLLQIHR+P                    + A    HA+    Q +MWNAVTPPGL+GLRGRR
Sbjct:    1 MQSLVLVDDYSRPA--AATAGPAKGDRSLLPLGLISKPPAAEHGTGXXXXXXXXA----AGRPQRPTGEPLSDPLYVRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPP-PATLASGVLTLLAILGSWGXXXXLVSAAGVGSGLAAGLTAGLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXXXVSAAAAH-DHHASGS--QADMWNAVTPPGLAGLRGRR 284
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BLAST of mRNA_P-fluviatile_contig1.362.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-17
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 2 
Query:  773 SMVGIALLGGGLASTALAFSLALSTLWRSGWWLYLQPECAPVLFMLSGVTADVAMGFLLASLLQ 964
            S++GIALLGGG AS     SL L+TLWR GWWLY+QPECAPV F+LSG TADVA+GFLL SLLQ
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI2.350e-6750.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE1.610e-1773.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4285541..4289136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004540.1
Exons4
Model size1768
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.362.1prot_P-fluviatile_contig1.362.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4286165..4288508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.864888-UTR-P-fluviatile_contig1:4285540..42861641622815326.864888-UTR-P-fluviatile_contig1:4285540..4286164Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4285541..4286164 -
1693561503.4225748-UTR-P-fluviatile_contig1:4285540..42861641693561503.4225748-UTR-P-fluviatile_contig1:4285540..4286164Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4285541..4286164 -
1622815326.9029372-UTR-P-fluviatile_contig1:4288508..42886581622815326.9029372-UTR-P-fluviatile_contig1:4288508..4288658Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4288509..4288658 -
1693561503.4615982-UTR-P-fluviatile_contig1:4288508..42886581693561503.4615982-UTR-P-fluviatile_contig1:4288508..4288658Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4288509..4288658 -
1622815326.9145362-UTR-P-fluviatile_contig1:4289024..42891361622815326.9145362-UTR-P-fluviatile_contig1:4289024..4289136Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4289025..4289136 -
1693561503.4713507-UTR-P-fluviatile_contig1:4289024..42891361693561503.4713507-UTR-P-fluviatile_contig1:4289024..4289136Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4289025..4289136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.875433-CDS-P-fluviatile_contig1:4286164..42863441622815326.875433-CDS-P-fluviatile_contig1:4286164..4286344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4286165..4286344 -
1693561503.4320796-CDS-P-fluviatile_contig1:4286164..42863441693561503.4320796-CDS-P-fluviatile_contig1:4286164..4286344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4286165..4286344 -
1622815326.8844743-CDS-P-fluviatile_contig1:4287054..42872461622815326.8844743-CDS-P-fluviatile_contig1:4287054..4287246Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4287055..4287246 -
1693561503.441705-CDS-P-fluviatile_contig1:4287054..42872461693561503.441705-CDS-P-fluviatile_contig1:4287054..4287246Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4287055..4287246 -
1622815326.8936133-CDS-P-fluviatile_contig1:4287998..42885081622815326.8936133-CDS-P-fluviatile_contig1:4287998..4288508Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4287999..4288508 -
1693561503.4517827-CDS-P-fluviatile_contig1:4287998..42885081693561503.4517827-CDS-P-fluviatile_contig1:4287998..4288508Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4287999..4288508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.362.1

>prot_P-fluviatile_contig1.362.1 ID=prot_P-fluviatile_contig1.362.1|Name=mRNA_P-fluviatile_contig1.362.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=294bp
MQSVVLIGDSCGVSDRSRTPGPAKGDRHLIPLGLIHKPPSEGGSGGAGID
GADAHRRQQQPPARPAAAAAAVAAHGSSPSTPPSLPPPPAGPPVLVLFPA
TLDLAIFVSAPPLGETLVSALLTLLAIVGSRAWGWGMVSTTGLSSGVSAG
IAVGLGVRSRPVGGWGFPALSMVGIALLGGGLASTALAFSLALSTLWRSG
WWLYLQPECAPVLFMLSGVTADVAMGFLLASLLQIHRTPPRQQEQSAAST
SMALPLPDESTATVSAHATPRVLQGEMWNAVTPPGLSGLRGRR*
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mRNA from alignment at P-fluviatile_contig1:4285541..4289136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.362.1 ID=mRNA_P-fluviatile_contig1.362.1|Name=mRNA_P-fluviatile_contig1.362.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3596bp|location=Sequence derived from alignment at P-fluviatile_contig1:4285541..4289136- (Porterinema fluviatile SAG_2381)
GATCACTGAGAAATCACCCATGGTACCAGGCCTTCAGACGTGGGGAATCA
CGATCCAAAGAGGATACGGCTGCGTTCGACCGTTGCTTGTGGGTCCTATT
GGCAGCTGACAGGTGTGTGCTCTAAAGCTTCTGCACCGCCGCAGGACCTA
TTTTGAAATGGATGTTCTCGTAGCCGTGTCCGCTCTCCGCTGGAAACTTG
AAACATCGGGACGCCGTTTGAAGGTGATGCACCGTGCATGTTGGCGTGTG
CATGGGTGTTGACTGAACGTTACACCGACATTGAGGAATATCACATGCGG
TGTGATTTCATGAATGCCTGCTGTTGTAGCTGTGTCGGCGAACAGAGAAC
AGCGGTGTCAACACTAAACCGTTGCTGCTACGTTTTTCTCGCTGGAATGG
TCGGTCCTCGTGCCTCTTCTCTGCTGCAACTGCTGGCCCTCCACGCTGTT
TGTTATTCGTATAAACGTTGCTGGCAAGCCTCTTGAAGAACCGCGGGCGA
GACAGAGCAACATTCGAAGACATCTGGCCACACCTACTGTGGCCAACGGC
GGCCAGACCCACAAAAGATCAACAGACCCGCCGCACGGGCAACGAGGAAG
CAGCAGCAGCAGTGACAGCACTGCGGCCATGCAGTCCGTCGTGCTCATTG
GTGACTCTTGCGGCGTTTCGGACCGCAGCAGAACGCCGGGGCCGGCGAAG
GGTGACCGACATCTCATCCCGCTGGGCTTGATACACAAACCTCCATCCGA
AGGCGGCAGCGGCGGGGCGGGGATCGACGGCGCCGACGCACACCGACGAC
AGCAACAACCACCAGCACGCCCAGCAGCAGCAGCAGCAGCAGTAGCAGCC
CATGGTTCTTCCCCGTCGACCCCGCCGTCGCTGCCACCGCCACCCGCGGG
GCCGCCCGTCTTGGTGCTCTTCCCGGCCACGCTCGACCTTGCAATCTTCG
TTTCGGCGCCACCGCTGGGCGAGACGCTTGTATCGGCACTCCTCACTCTG
CTGGCGATCGTGGGCTCGCGAGCGTGGGGCTGGGGGATGGTCTCCACGAC
GGGGCTTTCGTCGGGGGTGTCGGCCGGGATCGCGGTTGGGCTTGGCGTAC
GGTCGAGGCCCGTCGGGGGCTGGGGCTTTCCTGCTCTGGTGAGCAGCGGC
AACGAGCTGCAGAATCCTCCCCGTTCTTTTTTTTCTGGATAAAACAGTCA
AACAGAGAAAAAAATACACCGTAAAATGCGTGACTCACGGTTATTCGTAG
GGTTCCTTACAGAGAAGGTTCAGTTGAGCCGGCCGGAGTAAGCATTATTT
TGCTTTTTTTTTCGCATCTCTCGCCTCTCCCGTGCCACAACTGATCTGTG
TCCATTTTGAAGTCTGACCCCCGGCCAATACCCGATACCTTGTTCGCTGC
CCGTCCTTCGACGGCCAAATCCCTTTGCGTTGAAAAGTGAGTTGAAGGCT
CGTGCTTTGTGCCTATGCCCTCAGTGACGGTGCTGCAGGACGAGCTCAAT
TCTCCTTGTCGTCCCGTGCGCGCAAACACTCGTACAATGTGGCTCCCCCA
AGAAAACAGCAGGTCCAATTTTGTCAACAGGCTTGTTTCCTATCCTCCGT
CGCACGTTTTTGGAGCTGCTGTGGTTTCGATTTCATGTTTTGGAGCACTA
ATGGAGCAATCCTCTTCGAAGCACGACTCTGCTGTCTGAAGCTCGTACTT
ATCTTGTTCACTAAGGCATGTGGGCTCGGCGGTTACTATCTTTCTGCTTG
TCTCACCCTGTCCTTCGATGTCCCCTCTGCGCACCAACCTGCTTCGTTAT
GAGTCGCCCCCTTGATTCCATCCCGTTTCTGAACCATCAACTCCGCTGCA
TTGGGCGTGCATGAATCGGGGGTGTAAACCACACACGTAGTCGATGGTCG
GCATCGCGCTGCTCGGGGGAGGGTTGGCCAGCACCGCTCTCGCGTTCTCT
CTGGCTTTGTCTACGCTGTGGAGGAGCGGGTGGTGGCTGTATTTGCAGCC
GGAGTGCGCGCCCGTGCTGTTCATGCTGTCGGGGGTGACGGCAGATGTTG
CCATGGGGTTCTTGCTAGCTTCTCTTCTGCAGGTGAGGGGGGGGGGGTTG
CTTGCCTGAACTGTTGGCGGTGCTAATGTCGTGTTATCCTCGAACTATTA
TTATTGATAGTCGCTTTTAGAACCGGAAGGTATTGAGGCCACAGCAATGC
AATATCCTTAATTTGCATGTCCAAGAGTCTCTGCGGTGTCAAATTTGCAA
GCGTTTTTCTGTCTTGACGGCGAAGATCTGTTCGGGGGACACGGGATGGA
AGTAAAGCTCCCGACGTTTCAGGTCGACGACATGGGCGGTATCGCTAAGG
GCGGTCAGCACAGCTGCCCCTTCTCGCGCTTGGCACTGATGCTCATGCCC
ACGTCGTCAAATCTATTAGACGGGCGTTTTCTGCGCTGCCTTCACGGCAG
GACGTTCTCGGCCTGGCATCCTCTGTTCATCATCTAATAGTGGTACACCC
ACGATCGGTGGTTTACATCGCAGCGACCGTCCTAGCCGCACGCGAGGAAC
CAGAGTACGCCGTTTTTCGTGCAGACTTCTCTGGCGCAATCATCGGCGAC
GGGTGCTCGATGCCACCTTCGGCCTGCAACGGCTGCTGCTCTGCCAACGT
GTGTTTGCTCGTGGGTTCTCCTCCCAGCAAAATTTAGACATCGGCGTTGT
ATCCTGGAGATATGCCTGGAAACAAAGGAAACCATCCCTCCCCTCCCCTC
GACCGCCCCCCCGTCTGTTCCATTTTGCCAACTATCCGCCAGATACACCG
CACACCTCCACGGCAGCAAGAGCAGTCGGCAGCGTCGACATCGATGGCGT
TGCCTCTTCCCGACGAGAGTACGGCGACAGTATCGGCGCACGCGACCCCC
CGGGTGTTGCAAGGGGAGATGTGGAATGCGGTGACGCCGCCGGGTCTTTC
TGGCCTGCGCGGCCGCAGATGATTCGCTTGGTCAGGTTGACGTTGTTTTT
GTCAACACCATCTACTTCACACCGTAGATGCGTGTAGCGCCCGGCGTTCG
GAAGGGTTCATACGCAACCTTCCCCCCTGACCTCAAGCAGAAGGGGGGGG
GGATGACGGACGTGCCCGATTGTCAAGGGGCCTCGTTGCAAGTGGTGCGT
TTTCGATATCCTTTATAGGTCTGGTGCGTTCGTGCACGCTTTGAAGAAGG
TGCACATTCAGAAATTTTTTGCTTTTCAGCGCAATCTTATGCTTTAGTGG
TTGGGGCGGTATTTTGTTGCCGAAGAAGCATGATACAAAGCGAAGGGAGC
TCGACGTCGTGAGGTGCGCCTTGCTTGTGAGTTACGGTAGCGATGGTGCT
TTGCGGATGCTGGCTGGCTTGGAGCACAAATAGAGCAGGAGTTTCCTTCA
GCTAGTTTGGACGATTTTGGCAGGGTTCTGGTCCCTTACCCGCTTTGTTT
CTGTCCGTGCGTCCTCCTTTGACGAGAGCCTCGACGGGCGCTTCTGCCCT
GTGGAGCGACCGCCCGAAACACGGCGAATACTGCTTGTAGCTGTACTAGC
CTCCTGATCATTACGAGGGCTCCTCGTGCGATTAATGCAAACCACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4285541..4289136-

>mRNA_P-fluviatile_contig1.362.1 ID=mRNA_P-fluviatile_contig1.362.1|Name=mRNA_P-fluviatile_contig1.362.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1764bp|location=Sequence derived from alignment at P-fluviatile_contig1:4285541..4289136- (Porterinema fluviatile SAG_2381)
ATGCAGTCCGTCGTGCTCATTGGTGACTCTTGCGGCGTTTCGGACCGCAG
CAGAACGCCGGGGCCGGCGAAGGGTGACCGACATCTCATCCCGCTGGGCT
TGATACACAAACCTCCATCCGAAGGCGGCAGCGGCGGGGCGGGGATCGAC
GGCGCCGACGCACACCGACGACAGCAACAACCACCAGCACGCCCAGCAGC
AGCAGCAGCAGCAGTAGCAGCCCATGGTTCTTCCCCGTCGACCCCGCCGT
CGCTGCCACCGCCACCCGCGGGGCCGCCCGTCTTGGTGCTCTTCCCGGCC
ACGCTCGACCTTGCAATCTTCGTTTCGGCGCCACCGCTGGGCGAGACGCT
TGTATCGGCACTCCTCACTCTGCTGGCGATCGTGGGCTCGCGAGCGTGGG
GCTGGGGGATGGTCTCCACGACGGGGCTTTCGTCGGGGGTGTCGGCCGGG
ATCGCGGTTGGGCTTGGCGTACGGTCGAGGCCCGTCGGGGGCTGGGGCTT
TCCTGCTCTGATGCAGTCCGTCGTGCTCATTGGTGACTCTTGCGGCGTTT
CGGACCGCAGCAGAACGCCGGGGCCGGCGAAGGGTGACCGACATCTCATC
CCGCTGGGCTTGATACACAAACCTCCATCCGAAGGCGGCAGCGGCGGGGC
GGGGATCGACGGCGCCGACGCACACCGACGACAGCAACAACCACCAGCAC
GCCCAGCAGCAGCAGCAGCAGCAGTAGCAGCCCATGGTTCTTCCCCGTCG
ACCCCGCCGTCGCTGCCACCGCCACCCGCGGGGCCGCCCGTCTTGGTGCT
CTTCCCGGCCACGCTCGACCTTGCAATCTTCGTTTCGGCGCCACCGCTGG
GCGAGACGCTTGTATCGGCACTCCTCACTCTGCTGGCGATCGTGGGCTCG
CGAGCGTGGGGCTGGGGGATGGTCTCCACGACGGGGCTTTCGTCGGGGGT
GTCGGCCGGGATCGCGGTTGGGCTTGGCGTACGGTCGAGGCCCGTCGGGG
GCTGGGGCTTTCCTGCTCTGTCGATGGTCGGCATCGCGCTGCTCGGGGGA
GGGTTGGCCAGCACCGCTCTCGCGTTCTCTCTGGCTTTGTCTACGCTGTG
GAGGAGCGGGTGGTGGCTGTATTTGCAGCCGGAGTGCGCGCCCGTGCTGT
TCATGCTGTCGGGGGTGACGGCAGATGTTGCCATGGGGTTCTTGCTAGCT
TCTCTTCTGCAGTCGATGGTCGGCATCGCGCTGCTCGGGGGAGGGTTGGC
CAGCACCGCTCTCGCGTTCTCTCTGGCTTTGTCTACGCTGTGGAGGAGCG
GGTGGTGGCTGTATTTGCAGCCGGAGTGCGCGCCCGTGCTGTTCATGCTG
TCGGGGGTGACGGCAGATGTTGCCATGGGGTTCTTGCTAGCTTCTCTTCT
GCAGATACACCGCACACCTCCACGGCAGCAAGAGCAGTCGGCAGCGTCGA
CATCGATGGCGTTGCCTCTTCCCGACGAGAGTACGGCGACAGTATCGGCG
CACGCGACCCCCCGGGTGTTGCAAGGGGAGATGTGGAATGCGGTGACGCC
GCCGGGTCTTTCTGGCCTGCGCGGCCGCAGATGAATACACCGCACACCTC
CACGGCAGCAAGAGCAGTCGGCAGCGTCGACATCGATGGCGTTGCCTCTT
CCCGACGAGAGTACGGCGACAGTATCGGCGCACGCGACCCCCCGGGTGTT
GCAAGGGGAGATGTGGAATGCGGTGACGCCGCCGGGTCTTTCTGGCCTGC
GCGGCCGCAGATGA
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