mRNA_P-fluviatile_contig1.199.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.199.1
Unique NamemRNA_P-fluviatile_contig1.199.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 4.360e-90
Identity = 184/320 (57.50%), Postives = 228/320 (71.25%), Query Frame = 3
Query:   45 HPSQQVQRNKDIKDMTITRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKKA-PSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESP------PVAVATASETADD------------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMAN 947
            H +   + N D K MT T +IKI+FQGAS +V++ AP +LA LQ A+A+ F  +LP R+   EAA+ +DLSFTYKD +GDDIVFDKDSEL LA+RLCPSSLEISA  K++ P+ KP+PE RLY++AARNLREYNGVPSMT  KL KTL+FLKL P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LAE+V AGME++SV+DDK+E  DGFVS ES       P+   T++   D+            K +IHKAFI  GI+LRPREV+PLL+AL V P RL KLG VD K L  +L AEKK A+
Sbjct:    6 HNNNNNRYNND-KTMT-TPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAH 317          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 1.600e-89
Identity = 176/293 (60.07%), Postives = 219/293 (74.74%), Query Frame = 3
Query:   96 TRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKK-APSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAV-ATASETADD-------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMAN 947
            T +IKI+FQG S +V++  P TLA LQ A+A  F  +LP R+   EAA+ +DLSFTYKD +GDDIVFDKDSEL+LA+RLCP SLEISAA K+  P++KP+PE RLY++AARNLREYNGVPSMTP KL KTL+FL+L P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LAE+V AGME++SV+DDK+E  DGFVSVE    +     +E  +D       K +IHKAFIA GI+LRPREV+PLL+AL V P RL KLG V+ K L  +L AEKK+A+
Sbjct:    3 TSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAH 289          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 4.150e-89
Identity = 185/317 (58.36%), Postives = 227/317 (71.61%), Query Frame = 3
Query:   66 RNKDIKDMTITRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKKAPSSK-PNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQ-----------VIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMANASGGANADGNR 980
            R  + K MT T +IKI+FQGAS +V + AP TLA LQ A+A+ F V+LP R+   EAA+ +DLSFTYKD +GDDIVFDKDSEL+LALRLCP SLEISAA K+  ++K P+ E  LY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP++LLARM AE   N  L++ R      LGDG+N E LAE V AGME +SV+DDK+E  DGFVSVE    A  ++S+  ++++           +IHKAFIA GI+LRPREV+PLL+AL V P RL KLG VD K L  +L AEKK A+   G    G R
Sbjct:   21 RYNNDKTMT-TSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVR------LGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEP---AETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHGPGHGGPR 327          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.680e-88
Identity = 174/292 (59.59%), Postives = 217/292 (74.32%), Query Frame = 3
Query:   96 TRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKKAPSSK-PNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAV-ATASETADD------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMAN 947
            T +IKI+FQGAS +V++  P  LA LQ A+A+ F V+LP R+   EAA  +DLSFTYKD +GDDIVFDK+SEL LALRLCP SLEISAA K+  +++ P+ E +LY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LAE+V AGME++SV+D K+E  DGFVSVE   ++  A  +E  +D      K +IHKAFIA GI+LRPREV+PLL+AL V+P RL KLG V  K L  +L AEKK A+
Sbjct:   21 TSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAH 306          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.960e-88
Identity = 180/316 (56.96%), Postives = 222/316 (70.25%), Query Frame = 3
Query:   69 NKDIKDMTITRT-IKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARK-KAPSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQ----------VIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMANASGGANADGNR 980
            N+D  D T+T + IKI+FQGAS +V++ AP TLA LQ  +A+ F  +LP R+   EAA+ +DLSFTYKD +GDDIVFDKDSEL LA+RLCP SLEISAA K K  +  P+ E RLY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP+ LL RM AE   N  +++       PLGDG+N E LAE+V AGME++S++DDK+E  DGFVSVE  P   ++     ++K           +IHKAFIA GI+LRPREV+PLL+AL V P RL KLG VD K L  +L AEKK A+   G    G R
Sbjct:    9 NRDNNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVE--PADTSSPDNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHGPGHGGPR 316          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 7.290e-86
Identity = 176/303 (58.09%), Postives = 217/303 (71.62%), Query Frame = 3
Query:   96 TRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKK-APSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVE------SPPVAVATAS------ETADD------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMAN 947
            T +IKI+FQG S NV++ APFTLA LQ  +A+ F  +LP R+   EA + +DLSFTYKD +GDDIVFDKDSEL+LA+RLCP SLEISAA K+  P +KP+PE RLY++AARNLREYNGVPSMT  KL KTL+FLKL PRRLVKQGLAP+ LLARM AE   N  +++        LGDGEN E LAE+V AGME++SV+DDK+E  +GFVS +      + P+   T+S      E  DD      K +IH AFIA GI+LRPREV+PLL+AL V P RL KLG V+ K+L  +L AE K A+
Sbjct:    3 TSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKV------TLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAH 299          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 2.710e-78
Identity = 163/278 (58.63%), Postives = 202/278 (72.66%), Query Frame = 3
Query:   87 MTITRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEAAEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKKA-PSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVES--PPVAVATASETA----------DD------KQVIHKAFIAAGIRLRPREVQPLLLALGV 863
            M  T +IKI+FQGAS +V++ AP TL  LQ A+A+ F  +LP R+   EAA+ +DLSFTYKD +GDDIVFDKDSEL LA+RLCPSSLEISAA K++ P++KP+PE RLY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LA++V AGME++SV+D K+E  DGFVS ES  P  A    +ET+          DD      K +IHKAFIA GI+LRPRE   LLL + +
Sbjct:   15 MMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.690e-10
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  378 SSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYV 896
            + +PNP   +++ AARNLREY+GVPS+TP  L  T+  L+L P RLV QGLAP++LL     +GN   G+     +     G  E EE  A    +  ++ S   D  + G+  +  ++     +   E    K  I   F+A G++LRPRE +PLL  + ++    V L  V
Sbjct:   34 TGEPNPL--MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILL-----KGNSTAGVDA---DSTDGSGGFEAEEEQANNQFS-HDLSSNSSDGGDTGNDNIVTQN-----SIGFEARASKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVV 190          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.080e-6
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 3
Query:  405 LYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVL 545
            LY+ AARNLREY+GVPSMT   L KT+  L+L P RLV QGLAP+ +
Sbjct:   53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99          
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Match: D8LC36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC36_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.600e-6
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 3
Query:  405 LYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLL 548
            +YQ AARNLRE+  VPS+T   L KT++ L+L P RLV QGLAPR LL
Sbjct:   46 VYQAAARNLREFRRVPSLTAGGLEKTMALLQLRPARLVAQGLAPRDLL 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JQ17_9PHAE4.360e-9057.50PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI1.600e-8960.07PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE4.150e-8958.36PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE1.680e-8859.59PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI1.960e-8856.96PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE7.290e-8658.09PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI2.710e-7858.63PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCG1_9PHAE4.690e-1034.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI70_9PHAE1.080e-663.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC36_ECTSI3.600e-662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2553952..2557170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2579
Cds size1359
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.199.1prot_P-fluviatile_contig1.199.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2554038..2556036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815303.6796186-UTR-P-fluviatile_contig1:2553951..25540371622815303.6796186-UTR-P-fluviatile_contig1:2553951..2554037Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2553952..2554037 +
1693561449.6233225-UTR-P-fluviatile_contig1:2553951..25540371693561449.6233225-UTR-P-fluviatile_contig1:2553951..2554037Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2553952..2554037 +
1622815303.7133024-UTR-P-fluviatile_contig1:2556036..25571701622815303.7133024-UTR-P-fluviatile_contig1:2556036..2557170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2556037..2557170 +
1693561449.6479206-UTR-P-fluviatile_contig1:2556036..25571701693561449.6479206-UTR-P-fluviatile_contig1:2556036..2557170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2556037..2557170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815303.6913352-CDS-P-fluviatile_contig1:2554037..25543251622815303.6913352-CDS-P-fluviatile_contig1:2554037..2554325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2554038..2554325 +
1693561449.630619-CDS-P-fluviatile_contig1:2554037..25543251693561449.630619-CDS-P-fluviatile_contig1:2554037..2554325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2554038..2554325 +
1622815303.7003074-CDS-P-fluviatile_contig1:2554965..25560361622815303.7003074-CDS-P-fluviatile_contig1:2554965..2556036Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2554966..2556036 +
1693561449.6378968-CDS-P-fluviatile_contig1:2554965..25560361693561449.6378968-CDS-P-fluviatile_contig1:2554965..2556036Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2554966..2556036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.199.1

>prot_P-fluviatile_contig1.199.1 ID=prot_P-fluviatile_contig1.199.1|Name=mRNA_P-fluviatile_contig1.199.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=453bp
MTITRTIKISFQGASHNVDLSAPFTLAGLQHAVASKFAVDLPPRAGLDEA
AEGSDLSFTYKDSEGDDIVFDKDSELSLALRLCPSSLEISAARKKAPSSK
PNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAP
RVLLARMNAEGNKNEGLTQQRQEQQQPLGDGENEEGLAEAVTAGMEMVSV
KDDKQEPGDGFVSVESPPVAVATASETADDKQVIHKAFIAAGIRLRPREV
QPLLLALGVVPRRLVKLGYVDKKHLPRLLAAEKKMANASGGANADGNRIP
NAAANLQQKRQQLCQQRLRQRQLQIRQRLRQQRQQQRRMARGGGGRCGLA
GPVIQRGCVRRGAGAPVAIGANVCPPGKGTMSAIAHNGRDFTVERRQPTM
AVCRGICPAPSVLPPPPTQLEERVARVRQARRQARQAHRSGGGGARHQHL
GF*
back to top

mRNA from alignment at P-fluviatile_contig1:2553952..2557170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.199.1 ID=mRNA_P-fluviatile_contig1.199.1|Name=mRNA_P-fluviatile_contig1.199.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3219bp|location=Sequence derived from alignment at P-fluviatile_contig1:2553952..2557170+ (Porterinema fluviatile SAG_2381)
CCTCTCCAAGCCCTCCCTTCCGCTCACATTTCATCTGGCTGCCTCATCCG TCACAACAAGTACAGCGAAACAAGGACATCAAAGACATGACGATCACTCG CACGATCAAGATCAGCTTCCAGGGTGCCTCCCACAACGTCGACCTCTCGG CCCCGTTCACCCTCGCCGGCCTGCAGCACGCCGTCGCCTCCAAGTTCGCT GTGGACCTGCCCCCGAGGGCAGGTCTTGACGAGGCCGCCGAGGGCAGCGA CCTGTCCTTCACCTACAAGGACTCCGAGGGAGATGATATCGTGTTTGACA AGGATTCCGAGCTCAGCCTGGCGCTCCGCCTCTGCCCCAGCTCGCTCGAG ATCTCTGCTGCCCGCAAGAAAGCGGTGAGAACGATTAATGCGGCATGTGA ACAGGACAGCGGCGAGCGATGAGCGAGAGAGGGTGGGATACGGCTTCGGT GCTCGATTAACACTCGCGTTGCGTAGATCGTGTAAAAACAGGTAGTTAGG GGGTAAGAAAGATAAAAGAGAGCGAGAGACCATTTCATCATTGAACGAGA GTGAAACCGACAATCCTGACGAGGTTTCCATATGTGTCGATTTCGTGCCG TCGAGGGAAAGCACTGCAGTACGAAACAGCCGTCCTCCCCCTAACACCCC GCACCACTACGAGGGGATTCTCACAGCCGTGGTGAACCTAGTAAGGCCTC GGTTTTTATCAGCTCGGTAGGCTTCGACGTCATTCGTTGCTCTGCATGTG TGCGAGGGAACGAGAAACCGAAAATCGGTTGATTCATGTTGCCGGCGGTC CGTGAAGCGGAGGGACTCGCTCTTGTCAACAACACCATCGTCGACGAGCT CCTCTCTTTCGATTGTCTGATCGATCTCCTCCCAAATTTACCATCACGCC GAATAACGACGCTTCATCATTCTCCCCGCATGCCTGTCCCTGTTTCCTGA ACCAAGCCCCGCCCTCTCCTCGTTTCTCATCCCTCTGTTTCCCTCTCCCG CCTTCTCCCTCCAGCCCTCCAGCAAGCCGAACCCCGAACGCAGATTGTAC CAGGTTGCCGCCCGCAACCTCCGCGAGTACAACGGCGTACCGTCGATGAC CCCGGCCAAGCTACCGAAGACTCTGTCGTTCCTCAAGCTGGGCCCGCGCC GCCTCGTGAAGCAGGGCCTGGCCCCCAGGGTGCTGCTGGCCCGCATGAAC GCCGAAGGCAACAAGAACGAGGGCCTGACTCAGCAGCGGCAGGAGCAGCA ACAACCTCTTGGCGACGGCGAAAACGAGGAGGGCCTCGCCGAAGCGGTCA CCGCCGGTATGGAGATGGTGAGCGTGAAGGATGACAAGCAGGAGCCgGGA GATGGTTTCGTCTCTGTCGAGTCCCCCCCCGTCGCCGTGGCCACCGCTTC CGAGACTGCCGATGACAAGCAGGTCATCCACAAGGCCTTCATCGCCGCCG GTATTCGGCTCCGCCCCCGCGAGGTGCAGCCCTTGCTTCTGGCCCTGGGC GTCGTCCCTCGCCGCCTCGTGAAGCTCGGCTACGTCGACAAGAAGCACCT GCCCCGCCTGCTCGCCGCGGAGAAGAAGATGGCCAACGCCAGTGGTGGCG CGAACGCTGACGGCAACCGAATCCCGAACGCCGCCGCAAACCTGCAGCAG AAGCGGCAGCAGCTTTGCCAGCAGCGGCTTCGGCAGCGGCAGCTGCAGAT CCGGCAGCGGCTTCGGCAGCAGCGGCAGCAGCAGCGGCGTATGGCCCGCG GAGGTGGCGGCCGCTGCGGCCTCGCTGGGCCCGTGATACAGAGGGGCTGC GTCCGCCGCGGCGCCGGTGCTCCGGTAGCGATTGGAGCCAACGTGTGCCC CCCGGGGAAGGGAACGATGAGCGCCATCGCTCACAACGGCCGCGATTTTA CGGTCGAGCGCCGCCAGCCGACGATGGCGGTGTGCCGCGGCATTTGCCCC GCGCCCTCAGTACTCCCTCCCCCCCCGACCCAACTGGAGGAACGCGTGGC AAGGGTGCGTCAGGCTCGCCGTCAAGCTCGCCAGGCCCACCGCAGCGGCG GCGGCGGTGCTCGTCACCAGCACCTCGGGTTTTGAATGCTCGAGTCAGCA ACGTCTTCGCCATGGAGCCGAAGAAGGAGTGCAGATCATCTGCTACGACG TCTTGTTTTGTGCTTTTTCGTAAAGTTCAAGGCGGGTAGTAGGTCAAGAG GAGTCTGATTATATTATTTGCAATTGGGCAGAAGTCTCCCTCGGAAGAAT CGATACGAGGGGACGGGGCAGGTGGTTTGGGCGACAGAGAACCGTACCGC CGCCAGGCTTTTGCGCTCATGCAGCACGACGATCGGCGACTCTACATTCC AGCTCGACCGCTTTTGCCGATCGACTGGTTTGTTTAGTGCCTTCGTCTTG TATTTTTCGAAGCTCGTGGTCAGCCTCATGCTGTTGAATACGTAAGCGTA GGATACTCGAAGAGCCCGGCGATGTTGAGTCAGGGAAAGACTGTCGTTTC ATCTAGGAAAAAGAGCAATCGAAAGCTCTTTGTCCGACCCGAAGACGCAC ATCAATGTAGTGTGGAGGGGAAGACCTTCAGAAACGACGGTGATTTTGTG CAGCCGCAGAGTGGGTGCCGGTGATTCGTGTGTACCTTCCTTCTGGCTGA TATTGGTTGTTTCTATCAAAAGGGGTGAAAAGTTGCATTTTTTTTGTTTG TTGTATGACCCCAACCACAAGTAGTCGAAGGTTCGGGTTTTTTGCCGAGT GACACAAGTCGCGTCGCGGTATGTACAAGTTTTTTTTTTAAGCAAGCGAG GATGGAGGGAAAGACGCATGACAAGACTAGGGGTCAATGCGTCGGGTTTG CGCGGGAGAACGGGGTGATTTTTCGGTTTTCAGGTACTGGTTGTGACTTT TTGCTCTGCTCCGGTTTCGGTTGTGGTTTTGTCTGCGCGGGGCTGAAAGC TGGCCCGTTTGCGAAGCGAAAGATGGAGAGGATTGGAGAGGATTTTTTTG GACGTGTTGCCAGGGGGCAGAAGGACTCAGATTTGATCGAAGGCCTTCGT GTTGGTCTCAGTCGGATGTGGTGCTGAGATGAACTGTTCATACCTGTTAC AGGTACATGGATGGGTATCGTGTGAGTGGCGTTACGTGATTTGATGTATG TGGAACAAAAAAACGGTGACCTTCGCAGGGTCCCAAACAAACACAAAGCC TGATTTCTTCGCTCCGGAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:2553952..2557170+

>mRNA_P-fluviatile_contig1.199.1 ID=mRNA_P-fluviatile_contig1.199.1|Name=mRNA_P-fluviatile_contig1.199.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2718bp|location=Sequence derived from alignment at P-fluviatile_contig1:2553952..2557170+ (Porterinema fluviatile SAG_2381)
ATGACGATCACTCGCACGATCAAGATCAGCTTCCAGGGTGCCTCCCACAA
CGTCGACCTCTCGGCCCCGTTCACCCTCGCCGGCCTGCAGCACGCCGTCG
CCTCCAAGTTCGCTGTGGACCTGCCCCCGAGGGCAGGTCTTGACGAGGCC
GCCGAGGGCAGCGACCTGTCCTTCACCTACAAGGACTCCGAGGGAGATGA
TATCGTGTTTGACAAGGATTCCGAGCTCAGCCTGGCGCTCCGCCTCTGCC
CCAGCTCGCTCGAGATCTCTGCTGCCCGCAAGAAAGCGATGACGATCACT
CGCACGATCAAGATCAGCTTCCAGGGTGCCTCCCACAACGTCGACCTCTC
GGCCCCGTTCACCCTCGCCGGCCTGCAGCACGCCGTCGCCTCCAAGTTCG
CTGTGGACCTGCCCCCGAGGGCAGGTCTTGACGAGGCCGCCGAGGGCAGC
GACCTGTCCTTCACCTACAAGGACTCCGAGGGAGATGATATCGTGTTTGA
CAAGGATTCCGAGCTCAGCCTGGCGCTCCGCCTCTGCCCCAGCTCGCTCG
AGATCTCTGCTGCCCGCAAGAAAGCGCCCTCCAGCAAGCCGAACCCCGAA
CGCAGATTGTACCAGGTTGCCGCCCGCAACCTCCGCGAGTACAACGGCGT
ACCGTCGATGACCCCGGCCAAGCTACCGAAGACTCTGTCGTTCCTCAAGC
TGGGCCCGCGCCGCCTCGTGAAGCAGGGCCTGGCCCCCAGGGTGCTGCTG
GCCCGCATGAACGCCGAAGGCAACAAGAACGAGGGCCTGACTCAGCAGCG
GCAGGAGCAGCAACAACCTCTTGGCGACGGCGAAAACGAGGAGGGCCTCG
CCGAAGCGGTCACCGCCGGTATGGAGATGGTGAGCGTGAAGGATGACAAG
CAGGAGCCgGGAGATGGTTTCGTCTCTGTCGAGTCCCCCCCCGTCGCCGT
GGCCACCGCTTCCGAGACTGCCGATGACAAGCAGGTCATCCACAAGGCCT
TCATCGCCGCCGGTATTCGGCTCCGCCCCCGCGAGGTGCAGCCCTTGCTT
CTGGCCCTGGGCGTCGTCCCTCGCCGCCTCGTGAAGCTCGGCTACGTCGA
CAAGAAGCACCTGCCCCGCCTGCTCGCCGCGGAGAAGAAGATGGCCAACG
CCAGTGGTGGCGCGAACGCTGACGGCAACCGAATCCCGAACGCCGCCGCA
AACCTGCAGCAGAAGCGGCAGCAGCTTTGCCAGCAGCGGCTTCGGCAGCG
GCAGCTGCAGATCCGGCAGCGGCTTCGGCAGCAGCGGCAGCAGCAGCGGC
GTATGGCCCGCGGAGGTGGCGGCCGCTGCGGCCTCGCTGGGCCCGTGATA
CAGAGGGGCTGCGTCCGCCGCGGCGCCGGTGCTCCGGTAGCGATTGGAGC
CAACGTGTGCCCCCCGGGGAAGGGAACGATGAGCGCCATCGCTCACAACG
GCCGCGATTTTACGGTCGAGCGCCGCCAGCCGACGATGGCGGTGTGCCGC
GGCATTTGCCCCGCGCCCTCAGTACTCCCTCCCCCCCCGACCCAACTGGA
GGAACGCGTGGCAAGGGTGCGTCAGGCTCGCCGTCAAGCTCGCCAGGCCC
ACCGCAGCGGCGGCGGCGGTGCTCGTCACCAGCACCTCGGGTTTTGACCC
TCCAGCAAGCCGAACCCCGAACGCAGATTGTACCAGGTTGCCGCCCGCAA
CCTCCGCGAGTACAACGGCGTACCGTCGATGACCCCGGCCAAGCTACCGA
AGACTCTGTCGTTCCTCAAGCTGGGCCCGCGCCGCCTCGTGAAGCAGGGC
CTGGCCCCCAGGGTGCTGCTGGCCCGCATGAACGCCGAAGGCAACAAGAA
CGAGGGCCTGACTCAGCAGCGGCAGGAGCAGCAACAACCTCTTGGCGACG
GCGAAAACGAGGAGGGCCTCGCCGAAGCGGTCACCGCCGGTATGGAGATG
GTGAGCGTGAAGGATGACAAGCAGGAGCCgGGAGATGGTTTCGTCTCTGT
CGAGTCCCCCCCCGTCGCCGTGGCCACCGCTTCCGAGACTGCCGATGACA
AGCAGGTCATCCACAAGGCCTTCATCGCCGCCGGTATTCGGCTCCGCCCC
CGCGAGGTGCAGCCCTTGCTTCTGGCCCTGGGCGTCGTCCCTCGCCGCCT
CGTGAAGCTCGGCTACGTCGACAAGAAGCACCTGCCCCGCCTGCTCGCCG
CGGAGAAGAAGATGGCCAACGCCAGTGGTGGCGCGAACGCTGACGGCAAC
CGAATCCCGAACGCCGCCGCAAACCTGCAGCAGAAGCGGCAGCAGCTTTG
CCAGCAGCGGCTTCGGCAGCGGCAGCTGCAGATCCGGCAGCGGCTTCGGC
AGCAGCGGCAGCAGCAGCGGCGTATGGCCCGCGGAGGTGGCGGCCGCTGC
GGCCTCGCTGGGCCCGTGATACAGAGGGGCTGCGTCCGCCGCGGCGCCGG
TGCTCCGGTAGCGATTGGAGCCAACGTGTGCCCCCCGGGGAAGGGAACGA
TGAGCGCCATCGCTCACAACGGCCGCGATTTTACGGTCGAGCGCCGCCAG
CCGACGATGGCGGTGTGCCGCGGCATTTGCCCCGCGCCCTCAGTACTCCC
TCCCCCCCCGACCCAACTGGAGGAACGCGTGGCAAGGGTGCGTCAGGCTC
GCCGTCAAGCTCGCCAGGCCCACCGCAGCGGCGGCGGCGGTGCTCGTCAC
CAGCACCTCGGGTTTTGA
back to top