mRNA_P-fluviatile_contig16.2664.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2664.1
Unique NamemRNA_P-fluviatile_contig16.2664.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.610e-44
Identity = 81/108 (75.00%), Postives = 92/108 (85.19%), Query Frame = 1
Query:   43 QETAADANDDDHRGFIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYL 363
            ++TAA ANDDD RGFI+LLPRARDG++   DWDLLLKRQPN LTAAEKA FED TRLF+ K+EVN+YNG K REL  PVARVSAVH+G+N  + TADTAEGLERDLYL
Sbjct:  224 RQTAAAANDDDQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYL 331          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.950e-43
Identity = 81/108 (75.00%), Postives = 92/108 (85.19%), Query Frame = 1
Query:   43 QETAADANDDDHRGFIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYL 363
            ++TAA ANDDD RGFI+LLPRARDG++   DWDLLLKRQPN LTAAEKA FED TRLF+ K+EVN+YNG K REL  PVARVSAVH+G+N  + TADTAEGLERDLYL
Sbjct: 1301 RQTAAAANDDDQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYL 1408          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.380e-14
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  211 LFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYL 363
            LF+ K+EVN+YNG K REL  PVARVSAVH+G+N  + TADTAEGLERDLYL
Sbjct:   52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYL 103          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: UPI00109BC70A (uncharacterized protein LOC110236158 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC70A)

HSP 1 Score: 78.6 bits (192), Expect = 1.600e-13
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   64 NDDDHRGFIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFFKRE-VNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYL 363
            +D + R F DLL   R+G I   DW++LL RQP S+T  +  EF+DVTRLF+  E V +YN +K  EL  P+A++ A HS     K++     GLE  L+L
Sbjct: 1468 SDSEQRIFRDLLKHIRNGCISTSDWNVLLTRQPTSITNLD--EFKDVTRLFYSNEEVGKYNFSKLEELKHPIAKIEARHSTIKAKKISPQELFGLEPLLFL 1566          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6S7JFP0_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JFP0_PARCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-12
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   85 FIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYLGSQ 372
            F  LL R R+G + Q DW L+L+   +S T+    +F D  RL+F K+ V EYN  K  +LG+PVA++ A HSG      T+D A GL+  L+L ++
Sbjct:   57 FRALLMRMRNGEVTQEDWKLMLE---HSTTSVPMDQFTDAIRLYFDKKSVAEYNYGKLLQLGQPVAKIQAKHSGHGACAATSDEAGGLDAVLFLSTK 150          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6S7HMN7_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HMN7_PARCT)

HSP 1 Score: 75.5 bits (184), Expect = 1.720e-12
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   70 DDHR--GFIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYLGSQ 372
            DDH    F  LL R R+G +   DW LLL+   +S T+    +F D  RL+F K+ V EYN  K  +LG+PVA++ A HSG   +  T+D A GL+  L+L ++
Sbjct:  611 DDHETVAFRALLMRMRNGEVTGEDWKLLLE---HSTTSVPMDQFTDAIRLYFDKKSVAEYNYEKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTK 711          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6S7GPZ2_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GPZ2_PARCT)

HSP 1 Score: 74.7 bits (182), Expect = 3.400e-12
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   85 FIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYLGSQ 372
            F  LL R R+G + Q DW L+L+   +S T+    +F D  RL+F K+ V EYN  K  +LG+PVA++ A HSG      T+D A GL+  L+L ++
Sbjct: 1244 FRALLMRMRNGEVTQEDWKLMLE---HSTTSVPMDQFTDAIRLYFDKKSVAEYNYGKLLQLGQPVAKIQAKHSGHGACAATSDEAGGLDAVLFLSTK 1337          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6S7FUF4_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FUF4_PARCT)

HSP 1 Score: 73.6 bits (179), Expect = 7.970e-12
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   85 FIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYLGSQ 372
            F  LL R R+G +   DW LLL+   +S T+    +F D  RL+F K+ V EYN  K  +LG+PVA++ A HSG   +  T+D A GL+  L+L ++
Sbjct:  519 FRALLMRMRNGEVTGEDWKLLLE---HSTTSVPMDQFTDAIRLYFDKKSVAEYNYEKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTK 612          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A7D9ENH0_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ENH0_PARCT)

HSP 1 Score: 73.6 bits (179), Expect = 8.150e-12
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   85 FIDLLPRARDGRIRQVDWDLLLKRQPNSLTAAEKAEFEDVTRLFF-KREVNEYNGNKFRELGEPVARVSAVHSGSNTTKVTADTAEGLERDLYLGSQ 372
            F  LL R R+G +   DW LLL+   +S T+    +F D  RL+F K+ V EYN  K  +LG+PVA++ A HSG   +  T+D A GL+  L+L ++
Sbjct:  850 FRALLMRMRNGEVTGEDWKLLLE---HSTTSVPMDQFTDAIRLYFDKKSVAEYNYEKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTK 943          
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.080e-12
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:  365 GAKVTLTKNLYQQVGLVNGIRGEVVELVNAVDAPPPKLPL 484
            GAKV L+KNLYQQVGLVNGIRGEVVELV A DAPPPKLPL
Sbjct:  280 GAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPL 319          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8Y8_9PHAE3.610e-4475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE2.950e-4375.00ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JUS2_9PHAE2.380e-1473.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00109BC70A1.600e-1343.56uncharacterized protein LOC110236158 n=1 Tax=Exaip... [more]
A0A6S7JFP0_PARCT1.400e-1241.24Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A6S7HMN7_PARCT1.720e-1241.35ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7GPZ2_PARCT3.400e-1241.24ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7FUF4_PARCT7.970e-1241.24ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A7D9ENH0_PARCT8.150e-1241.24ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6H5JFG8_9PHAE9.080e-1290.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:597060..597636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.8
Seed ortholog evalue5.1e-09
Seed eggNOG ortholog28564.XP_002484617.1
EggNOG free text desc.Helitron helicase-like domain at N-terminus
EggNOG OGs39JTG@33154,3Q45F@4751,3RMAN@4890,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size577
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.8575315-CDS-P-fluviatile_contig16:597059..5975181622815686.8575315-CDS-P-fluviatile_contig16:597059..597518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 597060..597518 +
1693562936.6456552-CDS-P-fluviatile_contig16:597059..5975181693562936.6456552-CDS-P-fluviatile_contig16:597059..597518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 597060..597518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.8692331-UTR-P-fluviatile_contig16:597518..5976361622815686.8692331-UTR-P-fluviatile_contig16:597518..597636Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 597519..597636 +
1693562936.6564026-UTR-P-fluviatile_contig16:597518..5976361693562936.6564026-UTR-P-fluviatile_contig16:597518..597636Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 597519..597636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2664.1prot_P-fluviatile_contig16.2664.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 597060..597518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2664.1

>prot_P-fluviatile_contig16.2664.1 ID=prot_P-fluviatile_contig16.2664.1|Name=mRNA_P-fluviatile_contig16.2664.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
TSQAGSPKRTGCGPQETAADANDDDHRGFIDLLPRARDGRIRQVDWDLLL
KRQPNSLTAAEKAEFEDVTRLFFKREVNEYNGNKFRELGEPVARVSAVHS
GSNTTKVTADTAEGLERDLYLGSQGYAHEESVSTSWAGERHSRRSRGVGE
CS*
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mRNA from alignment at P-fluviatile_contig16:597060..597636+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2664.1 ID=mRNA_P-fluviatile_contig16.2664.1|Name=mRNA_P-fluviatile_contig16.2664.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=577bp|location=Sequence derived from alignment at P-fluviatile_contig16:597060..597636+ (Porterinema fluviatile SAG_2381)
ACCTCGCAGGCTGGCAGCCCAAAGCGAACGGGATGCGGCCCGCAGGAAAC AGCCGCCGACGCCAACGACGACGACCATAGGGGCTTCATCGACCTTCTGC CGCGTGCTCGTGATGGACGGATTCGCCAGGTGGACTGGGACCTCCTCCTC AAAAGACAGCCCAACAGCCTGACCGCCGCCGAGAAAGCGGAATTCGAGGA CGTCACGAGGCTCTTCTTCAAGAGAGAGGTCAACGAGTACAACGGGAACA AATTCCGGGAGCTCGGCGAGCCCGTCGCTCGTGTTTCCGCCGTCCATTCG GGCTCGAACACCACGAAGGTAACAGCAGACACGGCGGAGGGGCTGGAGAG GGACCTCTACTTAGGGAGCCAAGGTTACGCTCACGAAGAATCTGTATCAA CAAGTTGGGCTGGTGAACGGCATTCGAGGCGAAGTCGTGGAGTTGGTGAA TGCAGTTGACGCTCCCCCGCCGAAGCTCCCCCTAACCCTTACCCAAGCAG GTTTCAGGGAGGCTAGGGGGTGTGGAGATCACCTATACACGGTAGGGAGA ATCATACAAGGTCGGAAGAGGGTGGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:597060..597636+

>mRNA_P-fluviatile_contig16.2664.1 ID=mRNA_P-fluviatile_contig16.2664.1|Name=mRNA_P-fluviatile_contig16.2664.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig16:597060..597636+ (Porterinema fluviatile SAG_2381)
ACCTCGCAGGCTGGCAGCCCAAAGCGAACGGGATGCGGCCCGCAGGAAAC
AGCCGCCGACGCCAACGACGACGACCATAGGGGCTTCATCGACCTTCTGC
CGCGTGCTCGTGATGGACGGATTCGCCAGGTGGACTGGGACCTCCTCCTC
AAAAGACAGCCCAACAGCCTGACCGCCGCCGAGAAAGCGGAATTCGAGGA
CGTCACGAGGCTCTTCTTCAAGAGAGAGGTCAACGAGTACAACGGGAACA
AATTCCGGGAGCTCGGCGAGCCCGTCGCTCGTGTTTCCGCCGTCCATTCG
GGCTCGAACACCACGAAGGTAACAGCAGACACGGCGGAGGGGCTGGAGAG
GGACCTCTACTTAGGGAGCCAAGGTTACGCTCACGAAGAATCTGTATCAA
CAAGTTGGGCTGGTGAACGGCATTCGAGGCGAAGTCGTGGAGTTGGTGAA
TGCAGTTGAACCTCGCAGGCTGGCAGCCCAAAGCGAACGGGATGCGGCCC
GCAGGAAACAGCCGCCGACGCCAACGACGACGACCATAGGGGCTTCATCG
ACCTTCTGCCGCGTGCTCGTGATGGACGGATTCGCCAGGTGGACTGGGAC
CTCCTCCTCAAAAGACAGCCCAACAGCCTGACCGCCGCCGAGAAAGCGGA
ATTCGAGGACGTCACGAGGCTCTTCTTCAAGAGAGAGGTCAACGAGTACA
ACGGGAACAAATTCCGGGAGCTCGGCGAGCCCGTCGCTCGTGTTTCCGCC
GTCCATTCGGGCTCGAACACCACGAAGGTAACAGCAGACACGGCGGAGGG
GCTGGAGAGGGACCTCTACTTAGGGAGCCAAGGTTACGCTCACGAAGAAT
CTGTATCAACAAGTTGGGCTGGTGAACGGCATTCGAGGCGAAGTCGTGGA
GTTGGTGAATGCAGTTGA
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