mRNA_P-fluviatile_contig14.2341.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2341.1
Unique NamemRNA_P-fluviatile_contig14.2341.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2341.1 vs. uniprot
Match: D8LF89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF89_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.710e-64
Identity = 145/257 (56.42%), Postives = 166/257 (64.59%), Query Frame = 1 
Query:    1 AAPTPPTPPVVRILACGGTYIPGPHRPMLRIVDVETKPRADAV--RQGAAAADGGFGPDHADLCAGGGRRSEYDDD-----------------GERKAAKEAGMMMCVAISSAGAGGRGILVTGCYDKGVRMLHNVLSSDRDDGGCNPPPRPLRXXXXXXXXXXXXXXXXXXXXXXVTMRMLGRHREGVRSVAISADGRWAVSGDRGGTIKVWEIPQEAPPSGKEAPRE---GALAEFEAHRGTVFALCMSPDARTV 705
            ++P P  PPVVRILACGGT++P P +PMLR VDV T   A A   + G   AD    P  +DLCA    RSE D +                 G   A KEAG+M CVAIS+AGA GRGILVTG YDKGVR+LHNVL  DR+    NPP              XXXXXXXXXXXXXVTMRMLGRH EGVR+VAISADGRWAV+GDR G +KVWE+P+E PP     P      A AEFEAH+G V++LCMSPDART+
Sbjct:   21 SSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAAPAGAGADQAGGEEADVVSRPVRSDLCAAAAGRSERDGENXXXXXXXXXXXXXXRGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRE----NPP--------------XXXXXXXXXXXXXVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGLVKVWEVPRETPPGADREPSSPDGAAEAEFEAHKGYVYSLCMSPDARTL 259
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BLAST of mRNA_P-fluviatile_contig14.2341.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.360e-60
Identity = 140/259 (54.05%), Postives = 161/259 (62.16%), Query Frame = 1 
Query:    1 AAPTPPTPPVVRILACGGTYIPGPHRPMLRIVDVETKPRADAVRQ-GAAAADGGFGPDHADLCAGGGRRSEYDDD--------------------GERKAAKEAGMMMCVAISSAGAGGRGILVTGCYDKGVRMLHNVLSSDRDDGGCNPPPRPLRXXXXXXXXXXXXXXXXXXXXXXVTMRMLGRHREGVRSVAISADGRWAVSGDRGGTIKVWEIPQEAPPSGKEAP--REGAL-AEFEAHRGTVFALCMSPDARTV 705
            ++P P  P VVRILACGGT++P P +PMLR VDV T   A    Q G   AD    P  +DLCA    RSE + +                    G   A KEAG+M CVAIS+AGA GRGILVTG YDKGVR+LHNVL  DR+    NPP                  XXXXXXX  VTMRMLGRH EGVR+VAISADGRWAV+GDR G +KVWE+P+EAPP     P   +GA  AEFEAH+G V++LCMSPDARTV
Sbjct:  218 SSPAPVVPSVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERNGENXXXXXXXXXXXXXXXDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRE----NPP---------------SSSXXXXXXXPPVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGIVKVWEVPREAPPGADREPLSSDGAAEAEFEAHKGYVYSLCMSPDARTV 457
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF89_ECTSI1.710e-6456.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7H8_9PHAE2.360e-6054.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:3092879..3093583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-01_004050.1
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.1666944-CDS-P-fluviatile_contig14:3092878..30935831622815638.1666944-CDS-P-fluviatile_contig14:3092878..3093583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3092879..3093583 -
1693562637.5135586-CDS-P-fluviatile_contig14:3092878..30935831693562637.5135586-CDS-P-fluviatile_contig14:3092878..3093583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3092879..3093583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2341.1prot_P-fluviatile_contig14.2341.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 3092879..3093583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2341.1

>prot_P-fluviatile_contig14.2341.1 ID=prot_P-fluviatile_contig14.2341.1|Name=mRNA_P-fluviatile_contig14.2341.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=235bp
AAPTPPTPPVVRILACGGTYIPGPHRPMLRIVDVETKPRADAVRQGAAAA
DGGFGPDHADLCAGGGRRSEYDDDGERKAAKEAGMMMCVAISSAGAGGRG
ILVTGCYDKGVRMLHNVLSSDRDDGGCNPPPRPLRSASSPPSGQQNEKAA
AAAAPPPVTMRMLGRHREGVRSVAISADGRWAVSGDRGGTIKVWEIPQEA
PPSGKEAPREGALAEFEAHRGTVFALCMSPDARTV
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mRNA from alignment at P-fluviatile_contig14:3092879..3093583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2341.1 ID=mRNA_P-fluviatile_contig14.2341.1|Name=mRNA_P-fluviatile_contig14.2341.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=705bp|location=Sequence derived from alignment at P-fluviatile_contig14:3092879..3093583- (Porterinema fluviatile SAG_2381)
GCTGCTCCCACGCCGCCTACACCGCCCGTTGTTCGGATTCTCGCGTGCGG
CGGGACGTACATCCCGGGCCCGCACAGGCCGATGCTGCGCATTGTGGACG
TCGAGACGAAACCGAGGGCGGACGCAGTCAGGCAGGGCGCCGCCGCCGCC
GACGGCGGATTCGGGCCCGACCATGCCGACCTCTGCGCCGGCGGCGGCCG
CCGCTCCGAGTACGACGACGACGGCGAGCGCAAGGCGGCCAAGGAGGCGG
GGATGATGATGTGCGTGGCGATCTCCTCGGCCGGCGCGGGGGGCAGGGGA
ATCCTTGTCACCGGCTGCTACGACAAGGGCGTGCGCATGCTGCACAACGT
TCTCTCCTCGGACCGCGACGACGGGGGCTGCAACCCCCCGCCACGACCGC
TGCGATCGGCGTCGTCGCCCCCCTCTGGGCAGCAGAACGAGAAGGCGGCG
GCGGCAGCGGCTCCGCCGCCGGTGACCATGCGGATGCTAGGGCGCCACAG
AGAAGGGGTGAGGTCGGTGGCCATCTCGGCGGACGGGCGGTGGGCCGTCA
GCGGCGACCGCGGAGGAACCATAAAGGTGTGGGAGATACCACAGGAGGCG
CCTCCGTCGGGAAAGGAGGCCCCGCGGGAAGGGGCCTTGGCCGAGTTTGA
GGCGCATAGGGGCACCGTATTCGCGTTGTGCATGTCCCCCGACGCGCGCA
CGGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:3092879..3093583-

>mRNA_P-fluviatile_contig14.2341.1 ID=mRNA_P-fluviatile_contig14.2341.1|Name=mRNA_P-fluviatile_contig14.2341.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1410bp|location=Sequence derived from alignment at P-fluviatile_contig14:3092879..3093583- (Porterinema fluviatile SAG_2381)
GCTGCTCCCACGCCGCCTACACCGCCCGTTGTTCGGATTCTCGCGTGCGG
CGGGACGTACATCCCGGGCCCGCACAGGCCGATGCTGCGCATTGTGGACG
TCGAGACGAAACCGAGGGCGGACGCAGTCAGGCAGGGCGCCGCCGCCGCC
GACGGCGGATTCGGGCCCGACCATGCCGACCTCTGCGCCGGCGGCGGCCG
CCGCTCCGAGTACGACGACGACGGCGAGCGCAAGGCGGCCAAGGAGGCGG
GGATGATGATGTGCGTGGCGATCTCCTCGGCCGGCGCGGGGGGCAGGGGA
ATCCTTGTCACCGGCTGCTACGACAAGGGCGTGCGCATGCTGCACAACGT
TCTCTCCTCGGACCGCGACGACGGGGGCTGCAACCCCCCGCCACGACCGC
TGCGATCGGCGTCGTCGCCCCCCTCTGGGCAGCAGAACGAGAAGGCGGCG
GCGGCAGCGGCTCCGCCGCCGGTGACCATGCGGATGCTAGGGCGCCACAG
AGAAGGGGTGAGGTCGGTGGCCATCTCGGCGGACGGGCGGTGGGCCGTCA
GCGGCGACCGCGGAGGAACCATAAAGGTGTGGGAGATACCACAGGAGGCG
CCTCCGTCGGGAAAGGAGGCCCCGCGGGAAGGGGCCTTGGCCGAGTTTGA
GGCGCATAGGGGCACCGTATTCGCGTTGTGCATGTCCCCCGACGCGCGCA
CGGTTGCTGCTCCCACGCCGCCTACACCGCCCGTTGTTCGGATTCTCGCG
TGCGGCGGGACGTACATCCCGGGCCCGCACAGGCCGATGCTGCGCATTGT
GGACGTCGAGACGAAACCGAGGGCGGACGCAGTCAGGCAGGGCGCCGCCG
CCGCCGACGGCGGATTCGGGCCCGACCATGCCGACCTCTGCGCCGGCGGC
GGCCGCCGCTCCGAGTACGACGACGACGGCGAGCGCAAGGCGGCCAAGGA
GGCGGGGATGATGATGTGCGTGGCGATCTCCTCGGCCGGCGCGGGGGGCA
GGGGAATCCTTGTCACCGGCTGCTACGACAAGGGCGTGCGCATGCTGCAC
AACGTTCTCTCCTCGGACCGCGACGACGGGGGCTGCAACCCCCCGCCACG
ACCGCTGCGATCGGCGTCGTCGCCCCCCTCTGGGCAGCAGAACGAGAAGG
CGGCGGCGGCAGCGGCTCCGCCGCCGGTGACCATGCGGATGCTAGGGCGC
CACAGAGAAGGGGTGAGGTCGGTGGCCATCTCGGCGGACGGGCGGTGGGC
CGTCAGCGGCGACCGCGGAGGAACCATAAAGGTGTGGGAGATACCACAGG
AGGCGCCTCCGTCGGGAAAGGAGGCCCCGCGGGAAGGGGCCTTGGCCGAG
TTTGAGGCGCATAGGGGCACCGTATTCGCGTTGTGCATGTCCCCCGACGC
GCGCACGGTT
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