mRNA_P-fluviatile_contig14.2166.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2166.1
Unique NamemRNA_P-fluviatile_contig14.2166.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 9.080e-51
Identity = 88/106 (83.02%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    4 EGYCADVPAEAFEGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGES 321
            EGYCADVPAEAFEGS  PDITMYGTTSL SF ELVRNV I+AVVQVQYKYPRT   GKVSHIVVVGP GFQLCTCLKLMRCGL C+H+ AALVTRL RA DF+G S
Sbjct:  437 EGYCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGAS 542          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.140e-50
Identity = 88/106 (83.02%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    4 EGYCADVPAEAFEGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGES 321
            EGYCADVPAEAFEGS  PDITMYGTTSL SF ELVRNV I+AVVQVQYKYPRT   GKVSHIVVVGP GFQLCTCLKLMRCGL C+H+ AALVTRL RA DF+G S
Sbjct:  783 EGYCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGAS 888          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.120e-30
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   13 CADVPAEAFEGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGES 321
            C  VP E FE  +APD TM+GTTSL SF  LV  V ID +V+V YK+       KV H+V+VGPGGFQLCTCL+L+R GL C H+LAALVTRL R+ +F G+S
Sbjct:  395 CCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDR---KVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQS 494          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.390e-26
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   13 CADVPAEAFEGSDAPDITMYGTTSLSSFTELVRNVPI---DAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGE 318
            C  VPA+ F+G   PD +M+GTT L SF  LV +V I   DAVV+V YK        KV H+VV+GP GFQLC CL+LMR GL C H+LAALVT L RA +F GE
Sbjct: 1220 CCQVPADVFDGKKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKRR------KVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGE 1318          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.270e-24
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   13 CADVPAEAFEGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGES 321
            C +VP EAF+G D P+ T +G   L SF  LV NV IDA V+V YKY   T    VSH+VV+GP  FQ+CTCL++MR G  C H+LAALV R  R  +F G S
Sbjct:   49 CCEVPREAFDGKDNPE-TKFGAICLQSFFRLVANVKIDAGVKVSYKYRSPT----VSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALV-RSNRDSEFAGAS 145          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5KRH9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.880e-13
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   40 EGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKD 306
            E     D T++  TSL +   LV  VP+     V+YK   +  G    H+VV GPGGF LC+CLKL+R GL C H  AALV  +G   D
Sbjct:  686 EAESTEDNTVWARTSLEALLHLVSRVPVHLSAAVRYKLTPSRPG----HVVVFGPGGFYLCSCLKLLRHGLQCRHYFAALVRFIGGKMD 770          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.360e-12
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   40 EGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLG 294
            E     D T++  TSL +  +LV  VP+     V+YK   +  G    H+VVVGPGGF LC+CLK +R GL C H  A LV  +G
Sbjct:  260 EAESTEDNTVWARTSLEAPLDLVSRVPVHLAAAVRYKLTPSRPG----HVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIG 340          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.230e-11
Identity = 36/85 (42.35%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   40 EGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLG 294
            E     D T++  TSL +  +L   VP+     V YK   +  G    H+VV GPGGF LC+CLKLMR GL C H  A L   +G
Sbjct:  749 EAESTEDNTVWARTSLEALLDLFSRVPVHLAAAVPYKLTPSRPG----HVVVSGPGGFYLCSCLKLMRHGLPCRHYFAVLFRFVG 829          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.560e-11
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   40 EGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYKYPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLG 294
            E     D +++  TSL +  +L+  +P+     V+YK      G    H+VV GP GF LC+CLKL+R GL C H  A LV  LG
Sbjct:  303 EAESTEDSSVWARTSLEALLDLIGELPVHVAAAVRYKLTPARPG----HVVVFGPNGFHLCSCLKLLRHGLVCRHYFAVLVRFLG 383          
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Match: A0A6H5JEH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.070e-10
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  175 KVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVG 315
            KV H+VV+G GGFQ CTCL+++R    C  +L ALVT+LGRA DF G
Sbjct:    9 KVDHLVVIGLGGFQRCTCLQVIRRVSQCRQILVALVTKLGRASDFKG 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE9.080e-5183.02SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE4.140e-5083.02SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI2.120e-3059.22Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE4.390e-2656.19SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE2.270e-2453.40SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KRH9_9PHAE2.880e-1343.82SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2H3_9PHAE3.360e-1243.53SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZB4_9PHAE4.230e-1142.35SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JY17_9PHAE5.560e-1140.00SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5JEH9_9PHAE3.070e-1059.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1432680..1433000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue5.5e-26
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.6853464-CDS-P-fluviatile_contig14:1432679..14330001622815613.6853464-CDS-P-fluviatile_contig14:1432679..1433000Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1432680..1433000 +
1693562453.9094958-CDS-P-fluviatile_contig14:1432679..14330001693562453.9094958-CDS-P-fluviatile_contig14:1432679..1433000Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1432680..1433000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2166.1prot_P-fluviatile_contig14.2166.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1432680..1433000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2166.1

>prot_P-fluviatile_contig14.2166.1 ID=prot_P-fluviatile_contig14.2166.1|Name=mRNA_P-fluviatile_contig14.2166.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
KEGYCADVPAEAFEGSDAPDITMYGTTSLSSFTELVRNVPIDAVVQVQYK
YPRTTGGGKVSHIVVVGPGGFQLCTCLKLMRCGLHCNHMLAALVTRLGRA
KDFVGES
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mRNA from alignment at P-fluviatile_contig14:1432680..1433000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2166.1 ID=mRNA_P-fluviatile_contig14.2166.1|Name=mRNA_P-fluviatile_contig14.2166.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=321bp|location=Sequence derived from alignment at P-fluviatile_contig14:1432680..1433000+ (Porterinema fluviatile SAG_2381)
AAGGAAGGCTATTGCGCTGACGTACCCGCGGAGGCATTCGAGGGTAGCGA TGCTCCGGACATAACCATGTACGGGACGACATCCTTGTCGTCTTTTACGG AGCTTGTTCGGAATGTGCCTATCGATGCCGTCGTGCAAGTACAGTACAAA TATCCTAGAACTACGGGGGGTGGGAAGGTGAGCCACATTGTTGTGGTTGG ACCGGGAGGATTTCAGCTGTGTACGTGCTTAAAGCTTATGAGGTGTGGGT TGCACTGCAATCATATGTTGGCGGCACTGGTGACGAGGCTTGGCCGGGCA AAAGATTTTGTTGGGGAGTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1432680..1433000+

>mRNA_P-fluviatile_contig14.2166.1 ID=mRNA_P-fluviatile_contig14.2166.1|Name=mRNA_P-fluviatile_contig14.2166.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig14:1432680..1433000+ (Porterinema fluviatile SAG_2381)
AAGGAAGGCTATTGCGCTGACGTACCCGCGGAGGCATTCGAGGGTAGCGA
TGCTCCGGACATAACCATGTACGGGACGACATCCTTGTCGTCTTTTACGG
AGCTTGTTCGGAATGTGCCTATCGATGCCGTCGTGCAAGTACAGTACAAA
TATCCTAGAACTACGGGGGGTGGGAAGGTGAGCCACATTGTTGTGGTTGG
ACCGGGAGGATTTCAGCTGTGTACGTGCTTAAAGCTTATGAGGTGTGGGT
TGCACTGCAATCATATGTTGGCGGCACTGGTGACGAGGCTTGGCCGGGCA
AAAGATTTTGTTGGGGAGTCGAAGGAAGGCTATTGCGCTGACGTACCCGC
GGAGGCATTCGAGGGTAGCGATGCTCCGGACATAACCATGTACGGGACGA
CATCCTTGTCGTCTTTTACGGAGCTTGTTCGGAATGTGCCTATCGATGCC
GTCGTGCAAGTACAGTACAAATATCCTAGAACTACGGGGGGTGGGAAGGT
GAGCCACATTGTTGTGGTTGGACCGGGAGGATTTCAGCTGTGTACGTGCT
TAAAGCTTATGAGGTGTGGGTTGCACTGCAATCATATGTTGGCGGCACTG
GTGACGAGGCTTGGCCGGGCAAAAGATTTTGTTGGGGAGTCG
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