mRNA_P-fluviatile_contig14.2124.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2124.1
Unique NamemRNA_P-fluviatile_contig14.2124.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 6.300e-123
Identity = 182/187 (97.33%), Postives = 182/187 (97.33%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNKVGLPPSGGISAHGRTSGGVLSGGSSGIPGMRTR 583
            MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL AINDQ RLHAASNKVGLPPSGGISAHGR SGGV  GGSSGIPGMRTR
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGRPSGGVGGGGSSGIPGMRTR 187
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 281 bits (720), Expect = 6.190e-92
Identity = 134/157 (85.35%), Postives = 150/157 (95.54%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNKVGL 493
            MI+ V+IVNNHGKPRLVKFY+TV  E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L+A+NDQ++LHAAS KV L
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 275 bits (703), Expect = 2.250e-89
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNK 484
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQ RLHA S K
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQK 154
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.240e-88
Identity = 128/152 (84.21%), Postives = 142/152 (93.42%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAAS 478
            MI+G++IVNNHGKPRLVKFYQ+V  EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG   KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQT++H +S
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.840e-84
Identity = 132/171 (77.19%), Postives = 144/171 (84.21%), Query Frame = 2 
Query:   20 SMIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNKVGLPPSGGISAHGRTS 532
            +MI+ VI+VNNHGK RLVKFYQ V    AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+  KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI  IL AINDQ R+H ASNK   P +G     GR S
Sbjct:   13 NMIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTGNAVGRGRPS 182
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 262 bits (670), Expect = 2.010e-84
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNK 484
            MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H  S K
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 262 bits (670), Expect = 2.150e-84
Identity = 126/164 (76.83%), Postives = 143/164 (87.20%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNKVGLPPSGGIS 514
            MI+GVIIVNN GKPRL KFYQ+V  EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG   KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI  IL AI DQ +LHAAS K  +  + G+S
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLS 164
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR)

HSP 1 Score: 257 bits (656), Expect = 1.130e-82
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLH 469
            MI+G+IIVNNHGKPRLVKFYQ V  E  Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+  KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI  +L +I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 258 bits (658), Expect = 1.560e-82
Identity = 121/152 (79.61%), Postives = 138/152 (90.79%), Query Frame = 2 
Query:   23 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAAS 478
            MI+G+IIVNNHGKPRLVKFYQ+V  E  Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+  KLIYRHYATL+FVFAVDSQESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
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BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 259 bits (662), Expect = 9.110e-81
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 2 
Query:   20 SMIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHAASNKVGLP 496
            +MI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H  S K   P
Sbjct:  173 NMIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE5_ECTSI6.300e-12397.33AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZDS3_9STRA6.190e-9285.35AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T2Y9_9STRA2.250e-8986.36AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A6S8ZKR8_9STRA1.240e-8884.21AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A7R9U773_9STRA1.840e-8477.19Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B5YNE9_THAPS2.010e-8481.82AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A7S2P852_9STRA2.150e-8476.83AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]
A0A8J9T0F8_PHATR1.130e-8280.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JTJ4_FISSO1.560e-8279.61AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
K0SBT8_THAOC9.110e-8179.25Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1149395..1152083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.8
Seed ortholog evalue9.4e-98
Seed eggNOG ortholog2880.D7FQE5
Preferred nameAP3S1
KEGG koko:K10436,ko:K12399
KEGG Pathwayko04142,map04142
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006605,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007033,GO:0007034,GO:0007040,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008286,GO:0008565,GO:0009058,GO:0009405,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0018130,GO:0019438,GO:0019748,GO:0023052,GO:0030117,GO:0030119,GO:0030123,GO:0030133,GO:0030659,GO:0030705,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0034613,GO:0042221,GO:0042440,GO:0042441,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043434,GO:0043473,GO:0043474,GO:0044237,GO:0044249,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098791,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0936@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-01_006410.1
Exons4
Model size1083
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2124.1prot_P-fluviatile_contig14.2124.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1149417..1151586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.969484-UTR-P-fluviatile_contig14:1149394..11494161622815608.969484-UTR-P-fluviatile_contig14:1149394..1149416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1149395..1149416 +
1693562404.872927-UTR-P-fluviatile_contig14:1149394..11494161693562404.872927-UTR-P-fluviatile_contig14:1149394..1149416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1149395..1149416 +
1622815609.0707865-UTR-P-fluviatile_contig14:1151586..11520831622815609.0707865-UTR-P-fluviatile_contig14:1151586..1152083Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1151587..1152083 +
1693562407.953333-UTR-P-fluviatile_contig14:1151586..11520831693562407.953333-UTR-P-fluviatile_contig14:1151586..1152083Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1151587..1152083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.9863718-CDS-P-fluviatile_contig14:1149416..11494851622815608.9863718-CDS-P-fluviatile_contig14:1149416..1149485Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1149417..1149485 +
1693562404.8823586-CDS-P-fluviatile_contig14:1149416..11494851693562404.8823586-CDS-P-fluviatile_contig14:1149416..1149485Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1149417..1149485 +
1622815609.0022569-CDS-P-fluviatile_contig14:1150108..11503161622815609.0022569-CDS-P-fluviatile_contig14:1150108..1150316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1150109..1150316 +
1693562404.8971224-CDS-P-fluviatile_contig14:1150108..11503161693562404.8971224-CDS-P-fluviatile_contig14:1150108..1150316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1150109..1150316 +
1622815609.0153134-CDS-P-fluviatile_contig14:1150881..11509521622815609.0153134-CDS-P-fluviatile_contig14:1150881..1150952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1150882..1150952 +
1693562407.9263582-CDS-P-fluviatile_contig14:1150881..11509521693562407.9263582-CDS-P-fluviatile_contig14:1150881..1150952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1150882..1150952 +
1622815609.0280755-CDS-P-fluviatile_contig14:1151370..11515861622815609.0280755-CDS-P-fluviatile_contig14:1151370..1151586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1151371..1151586 +
1693562407.938524-CDS-P-fluviatile_contig14:1151370..11515861693562407.938524-CDS-P-fluviatile_contig14:1151370..1151586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1151371..1151586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2124.1

>prot_P-fluviatile_contig14.2124.1 ID=prot_P-fluviatile_contig14.2124.1|Name=mRNA_P-fluviatile_contig14.2124.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=188bp
MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNY
LEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQTRLHA
ASNKVGLPPSGGISAHGRTSGGVLSGGSSGIPGMRTR*
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mRNA from alignment at P-fluviatile_contig14:1149395..1152083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2124.1 ID=mRNA_P-fluviatile_contig14.2124.1|Name=mRNA_P-fluviatile_contig14.2124.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2689bp|location=Sequence derived from alignment at P-fluviatile_contig14:1149395..1152083+ (Porterinema fluviatile SAG_2381)
GTCATATACCGGTCACCACAGCATGATTCGAGGTGTGATCATCGTGAATA
ACCATGGAAAACCTCGCCTTGTGAAGTTTTACCAGACAGTGGTGAGTGCA
TGGAGTGTGCTCCACTGATGACAAATCCCATCTGATCCGCGAAATGCGGG
ATAACTGAATTTGAACCTGCGCCAGAGACAGCGGCCGGCAAACAGACACA
CCTTCTCTTTCGGCGGGTTGCTTTCCCCTCCCTATTGCTTCATAGTGTGG
TGTCGGGCACGGGAATATAGATTGATTCAATTCGTTGAGTGTGTTTGGCT
TCAGCTCGCTTGTACCTGTTTGTGTGGCACCGACGTTCGACCTTCTTCAT
GTTCCCTAGGAAAGTCTCCGGCACGGTGCACCAACCCCGATGCAGGGGTG
GTCTCGAGGACGCAAGCTCGGTCGTTTGGGCACGTCTGCGTATACCAGAC
TATTGAACCACATCTCATTGTGCAGCAGCAGAATCGTGACTCATTCACAG
GCCCATCCATGCTGATACACCAGCAATCGTTCTGAGTAGCGAAGCTGTTC
TTCGTAACCTACGCTGTTGAGATTCAAGAGGAACCAAGGGCTTGCAGCAC
ACCCACCGCTAGTCATACGCACACATTATGCGCTGGTCGATAACGGACAA
TCTTGTGTGGATAATACTAATCGACGAACGTGCCCGACAAATTTTTGATA
ACACGGCCGGCCAGGTCGGCGAAGAGGCCCAGAAAAGCGTTATACAGCGC
ATCTTTCAGCAGGTGGCGCAACGACCGGACTCGTTCTGCAACTACTTGGA
AGGGATCATTCCCGAGTGGGGCGAGGGAACAAAACTCATCTACCGGCACT
ACGCCACGCTCTATTTTGTCTTCGCCGTCGACTCGCAAGAGAGCGATCTC
GGTATCCTCGACCTCGTCCAAGGTGAGATTCATTGCAGGGCTGGAAACCA
GACACCACACATGTTGCGGCTCGTCGAACGTTTTCAGCATCCAAGCTCTC
AGACCGTACTTTGTGCGGTGCCGCACCGATCGAGTGCGCCTTTCCTCAGA
AGGAAGGACGACATTCGCGATCGGTAGCCGTTTGGCCTTGTATCCCCCCT
CGGGATGGCCGACATGCGGCACGGACGTCCGTCTGGAGCAGTGCCTAGAC
CACCCTTCTACGTAGGAAACCTTCGATTTGTAAGCAAGCATACTTGGAGC
CATGCACGAGGGAAACATTCGTTCAACCTGCAGGGGTGCTTGCTCTCGTT
TTGCGCGCTATCCGCGTGGATTCTGTAGAGGCCTTGGATCGAAGGGCATG
TGGCAGTGGGTGCCGCCTCCCTCCATCGTTTTGTACTCCACGCCAACCTC
AAATCACCACGGATTCATTCTTGCCGTGCTGTACGTTCGACATTTTTCCA
AGCGTACGGTTTATCACGTAACACGAACCCTGCTCTCATCTGTTTCTGCA
TCCTCCGTCTCACTAATTGCATTCCCCCTGGCGGCAGTTTTCGTGGAGGC
GCTGGACAAGTGCTTCGAAAATGTGTGCGAGTTGGACCTGATATTCCACT
CCGACAAGGTGCTGACGTGGCGACGTACTTGACCGGTACTGTTGCACACA
ATTTCGCTATTGATGTTGGCGGCGTTCAGGCCTAGCGCCGAAGCTTGCCG
TGCAAGATGGTCGTGCGGGTGTCATCAGAGCAGGTGTCCATGCGATAAAA
AGACAGAACTACAGACCCACTGCTCGCAGGTTGAGGCGTGGTTGTTTCTA
TGCCGTGTCTTATTTTTTCTCGAGAACTGCACTGTACAAGCAATGCGAGA
ACACCCGGCCATCTTTCCGGCCATATTGAACCTCCATGCGCGCCCCGTTC
GCAGTCCTTGTGCAGGCAGAGCTACCCTGAAGGCATGTTCATGAAGAGGG
CGTGCCGAAATCAAGTCATGCAGTTCGTCAAACCTATCCACGTTTCTCTC
CGCGTTCTTCCCGCTGCGGAAAACAGGTTCACTACGTCCTCGACGAGATC
ATCATGGGCGGCATGGTCCTTGAGACCAATATCAACCAGATTTTGACGGC
GATCAACGACCAAACACGTCTGCACGCAGCCTCCAATAAGGTCGGCCTCC
CCCCATCGGGCGGCATCAGCGCGCACGGGAGGACTTCCGGGGGAGTATTG
AGCGGCGGATCCTCGGGCATTCCCGGCATGCGAACACGATGACATGAGTG
GCGGAGGTGGCTGGGGCGGTCGGTGATGTTGATGGAGGTGATTTCCTGAT
GGTGGGAAGATTTCGGGCACGGTGGGTGGCGGGAGAGACTAAAGGCGATG
CTCTCCTCTTTCAGGGAGCGGCGCTGCAGGCAGACGCCGCAGGGGGGGAT
TCATTCGGTTTGATGATGGCGGTTGGACTAGAGGCAACGGAGCCGCCCGG
GAAGCGTTGTTGGAAAGAGGCACAACTTGTCCCATCCCGAGAAGCGACAG
CTCGTTCTAGCTCGCCCATGGTAGATGATCCAACAACTCGCCACCGCATC
AAGCGGTTTCGGATCTTGCAGCCGCGTGCATCACCTCGTTACTGTTACGC
GGCGTTCTCGACTTGTTTTGGTGCCCATCGACTCGGCTGAGCTTCGAGTA
CCCACTGGGACGCCAAGGGCTGACAAGCTAGGTTCGGAATCATTCGTCGT
CGCACGTGGGAAAGTGAAGAACTACACGATGTTTTGCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1149395..1152083+

>mRNA_P-fluviatile_contig14.2124.1 ID=mRNA_P-fluviatile_contig14.2124.1|Name=mRNA_P-fluviatile_contig14.2124.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1128bp|location=Sequence derived from alignment at P-fluviatile_contig14:1149395..1152083+ (Porterinema fluviatile SAG_2381)
ATGATTCGAGGTGTGATCATCGTGAATAACCATGGAAAACCTCGCCTTGT
GAAGTTTTACCAGACAGTGATGATTCGAGGTGTGATCATCGTGAATAACC
ATGGAAAACCTCGCCTTGTGAAGTTTTACCAGACAGTGGTCGGCGAAGAG
GCCCAGAAAAGCGTTATACAGCGCATCTTTCAGCAGGTGGCGCAACGACC
GGACTCGTTCTGCAACTACTTGGAAGGGATCATTCCCGAGTGGGGCGAGG
GAACAAAACTCATCTACCGGCACTACGCCACGCTCTATTTTGTCTTCGCC
GTCGACTCGCAAGAGAGCGATCTCGGTATCCTCGACCTCGTCCAAGGTCG
GCGAAGAGGCCCAGAAAAGCGTTATACAGCGCATCTTTCAGCAGGTGGCG
CAACGACCGGACTCGTTCTGCAACTACTTGGAAGGGATCATTCCCGAGTG
GGGCGAGGGAACAAAACTCATCTACCGGCACTACGCCACGCTCTATTTTG
TCTTCGCCGTCGACTCGCAAGAGAGCGATCTCGGTATCCTCGACCTCGTC
CAAGTTTTCGTGGAGGCGCTGGACAAGTGCTTCGAAAATGTGTGCGAGTT
GGACCTGATATTCCACTCCGACAAGTTTTCGTGGAGGCGCTGGACAAGTG
CTTCGAAAATGTGTGCGAGTTGGACCTGATATTCCACTCCGACAAGGTTC
ACTACGTCCTCGACGAGATCATCATGGGCGGCATGGTCCTTGAGACCAAT
ATCAACCAGATTTTGACGGCGATCAACGACCAAACACGTCTGCACGCAGC
CTCCAATAAGGTCGGCCTCCCCCCATCGGGCGGCATCAGCGCGCACGGGA
GGACTTCCGGGGGAGTATTGAGCGGCGGATCCTCGGGCATTCCCGGCATG
CGAACACGATGAGTTCACTACGTCCTCGACGAGATCATCATGGGCGGCAT
GGTCCTTGAGACCAATATCAACCAGATTTTGACGGCGATCAACGACCAAA
CACGTCTGCACGCAGCCTCCAATAAGGTCGGCCTCCCCCCATCGGGCGGC
ATCAGCGCGCACGGGAGGACTTCCGGGGGAGTATTGAGCGGCGGATCCTC
GGGCATTCCCGGCATGCGAACACGATGA
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