mRNA_P-fluviatile_contig13.1926.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1926.1
Unique NamemRNA_P-fluviatile_contig13.1926.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1926.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.440e-25
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 3 
Query:  291 RKAWARTAKPDSKDSGND-NKLDVLTGSGLRGMDTSKLKGNERRDAEWFQRTADREGRGQLAFFEDPAFYIAVSVLAPLVILTWGVLNCYIPGFCPVTL 584
            R +WA +A    K+  +D +++D+LTGSGLRG+DTSKL GNE+RDA+WF RT  RE    L +FEDP FY+ + ++ P+V L WG LNCY+PG CP TL
Sbjct:   19 RSSWATSATKRGKEGDDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGICPSTL 113
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BLAST of mRNA_P-fluviatile_contig13.1926.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.200e-23
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 3 
Query:  291 RKAWARTAKPDSKDSGNDN---KLDVLTGSGLRGMDTSKLKGNERRDAEWFQRTADREGRGQLAFFEDPAFYIAVSVLAPLVILTWGVLNCYIPGFCPVTL 584
            R +WA  A      S +D+   ++D+LTGSGLRG+DTSKL GNE+RDA+WF RT  RE    L +FEDP FY+ + ++ P+V L WG  NCY+PG CP TL
Sbjct:   73 RNSWATRATKRGNTSNDDDDIDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGICPATL 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1A0_ECTSI1.440e-2554.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI54_9PHAE1.200e-2352.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2892019..2894372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005270.1
Exons2
Model size1878
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1926.1prot_P-fluviatile_contig13.1926.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2893310..2893774 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.283683-UTR-P-fluviatile_contig13:2892018..28933091622815582.283683-UTR-P-fluviatile_contig13:2892018..2893309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2892019..2893309 -
1693562343.2962134-UTR-P-fluviatile_contig13:2892018..28933091693562343.2962134-UTR-P-fluviatile_contig13:2892018..2893309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2892019..2893309 -
1622815582.3074212-UTR-P-fluviatile_contig13:2893774..28937991622815582.3074212-UTR-P-fluviatile_contig13:2893774..2893799Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2893775..2893799 -
1693562343.9553688-UTR-P-fluviatile_contig13:2893774..28937991693562343.9553688-UTR-P-fluviatile_contig13:2893774..2893799Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2893775..2893799 -
1622815582.3205357-UTR-P-fluviatile_contig13:2894275..28943721622815582.3205357-UTR-P-fluviatile_contig13:2894275..2894372Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2894276..2894372 -
1693562343.977113-UTR-P-fluviatile_contig13:2894275..28943721693562343.977113-UTR-P-fluviatile_contig13:2894275..2894372Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2894276..2894372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.2957149-CDS-P-fluviatile_contig13:2893309..28937741622815582.2957149-CDS-P-fluviatile_contig13:2893309..2893774Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2893310..2893774 -
1693562343.313466-CDS-P-fluviatile_contig13:2893309..28937741693562343.313466-CDS-P-fluviatile_contig13:2893309..2893774Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2893310..2893774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1926.1

>prot_P-fluviatile_contig13.1926.1 ID=prot_P-fluviatile_contig13.1926.1|Name=mRNA_P-fluviatile_contig13.1926.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=155bp
MTMMLAQTRLVVVPVALLMLLSATAIEAFAFTALTTDARRYCREGPMSSP
PGAKSGRKAWARTAKPDSKDSGNDNKLDVLTGSGLRGMDTSKLKGNERRD
AEWFQRTADREGRGQLAFFEDPAFYIAVSVLAPLVILTWGVLNCYIPGFC
PVTL*
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mRNA from alignment at P-fluviatile_contig13:2892019..2894372-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1926.1 ID=mRNA_P-fluviatile_contig13.1926.1|Name=mRNA_P-fluviatile_contig13.1926.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2354bp|location=Sequence derived from alignment at P-fluviatile_contig13:2892019..2894372- (Porterinema fluviatile SAG_2381)
GTGCAAAGTAACCACGGAGCTCGGGACTGTCACATGTCCGCTCTTCCCGC
TCCTCACCCTTGCTCAACACCTTGCGCGGCCGACCGGCTGGGACAAGGTG
GGTACATCAAGTGAGGATATTCGATGATTCAACGTAGAGCGTTGGCACTA
GCCTGGCTGGCTTTTGGGTGCGCTTTAACACTCACAATGTCTGAAACATG
CAAGAAGCTCTCGAATGGGACGCAGGACGCAGGACGCAGTAGGTGTCGGG
TTTGGGCGCAAGCATGGGAAAAACACGAGTCACTTTCAACATCAGCTACG
CCATGATGTGTTCTCACGTCAATGTTCTTATGTTCGGGTTTTGGGGCTGG
AAAAGTACATCGCAGTACTTCACTGTGGCACTGTGGCTGGCACGGCTCAA
GCATGCCGTCGCACCGAAGTCCATGAAAGATTCATGAAGGGCCGCGAAAC
GTGATTTCCGGCCGCTCATGAAGCGCTATCGTGCTTGCCTCACTTGATCG
ATTTGATCGTACATACGACCTAATCATGCACGCCCTCCGCTCGGCTGAAC
TCCTTGCTGCCTCTCTCGCACAGCACACCGAACAAAGAACGCCATCATAT
GACGATGATGCTCGCGCAGACGAGGCTGGTGGTGGTACCGGTCGCGTTGT
TAATGCTCCTATCCGCCACAGCTATCGAGGCATTTGCGTTCACCGCGTTG
ACCACCGATGCACGACGATACTGCCGTGAGGGGCCTATGTCTTCTCCTCC
GGGGGCCAAGAGCGGGCGGAAAGCGTGGGCGAGGACGGCCAAGCCGGACA
GCAAGGACAGCGGAAACGACAACAAGCTAGACGTCCTCACCGGGAGCGGC
CTACGCGGGATGGACACGAGCAAGCTCAAGGGGAACGAGAGGAGGGACGC
GGAGTGGTTCCAAAGGACGGCTGATCGAGAAGGGCGCGGCCAGCTCGCGT
TTTTCGAAGACCCGGCCTTTTACATCGCCGTCTCCGTGCTCGCCCCGCTG
GTAATCCTGACCTGGGGTGTGCTGAATTGCTACATCCCTGGTTTCTGCCC
CGTTACTCTGTAGTCCACTTCGACCGAGAAAATGCTGGGCGCTCCAGGGG
CATGGCGCGGCCGACGGACGGGGTGCTCAACTCTCATGTGTAAATAGGGT
TTAAATCGATCGTCAACCACTATCCTGGGATATCCCTAGGGGATGGGGGA
GGGGATGGTGGGAAACATACTTTTTTATGATCACATCTTCTCAGCCAGGC
TTTGCGTACGCAGGGCTTTAACCAGGCACGAGGGGCGGCGGTGGGGGGCC
TTGTACCCGAGCCGAGGAAAAAAGGACAAATAAGGTGCCGCATTTTCGCA
TGGCACTTGCGCGGGTGCGGTAGGGGGGGTGGAACGGGCCAGAGGAGGAG
GCGGGTGGGGTACACACAGGAGAATGACGCAATGGTGCAAAAAAAAGTTC
GGAGAGTTTTGAGTGAGTGTATCGCGGACTTGGCATTTGGGGGAGGGGAA
TAGAGACTGGACAGGGGCTAAAGGAAGGAGATGGCGAGAAAAGGGACTAC
ACATTCGGGGCTATAACTTGCATTTGGCTGCCCATGTCGGTATTGCTATC
TCCTGCATTATCTGCAGGACAGGGTACGCATTGCGCAGGCCGCTCGCCAA
CTCGTTGAGACATGTCCATATTAAACTAATCCGATGCTCATAAAGATGCT
GTCGCGCGCAGGAACGCTCCAGAGGTCCGGCACGAAAATTGTTTCTAATG
CGAACGGTGATCCCGTGTGCGGCTAGCTGGTTTTGATACGCCACGAAAGG
CAAGCGTTATTCGGAATTGTCCACGATGTTGATACCTTGACTGTATGAAG
AACAGAGGTGTAGGTGGTGACAAATCAGACAGCCGGGCTGAGCGTGAGTT
GCTTGTGGACATCTCGCACAAAGTCCTGTGCTGCGAAGAATGCGTCAAAA
AGTTGGGAAGAAGGAAATCTTGGTAGTTTAGGCTTATTCTGCACTAAAAG
GTGTGCATTTGTCGGCATGATGAGGTGGACGCCCAAGTTCCAGTGAATGC
AGTGGATTCGACAAACAACCAAACGAATTCTGCTGTGCCTTGTTCTCGAC
AGCGTAGGTGGTCATCCACGCCTATTTTTTGGTAAACTAACCGCGTAGCC
GAAGATGACAGACTCTTCTCCCTCGGTGATGGCGAATGCAACAGTGACGC
AAAGAGACATACAAGGCGTTGAACCAATTAATTTTTTGGAAGAGGTAATT
GCGCGTTCAAGGGCACCAACTCACCAAGGACTTTGTTGATGCAGCCATGT
GAGAAGCAAGCACGGGGGCGCTATTCATTCATTGCGCAGAAGCAGCCTCC
TCGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2892019..2894372-

>mRNA_P-fluviatile_contig13.1926.1 ID=mRNA_P-fluviatile_contig13.1926.1|Name=mRNA_P-fluviatile_contig13.1926.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=930bp|location=Sequence derived from alignment at P-fluviatile_contig13:2892019..2894372- (Porterinema fluviatile SAG_2381)
ATGACGATGATGCTCGCGCAGACGAGGCTGGTGGTGGTACCGGTCGCGTT
GTTAATGCTCCTATCCGCCACAGCTATCGAGGCATTTGCGTTCACCGCGT
TGACCACCGATGCACGACGATACTGCCGTGAGGGGCCTATGTCTTCTCCT
CCGGGGGCCAAGAGCGGGCGGAAAGCGTGGGCGAGGACGGCCAAGCCGGA
CAGCAAGGACAGCGGAAACGACAACAAGCTAGACGTCCTCACCGGGAGCG
GCCTACGCGGGATGGACACGAGCAAGCTCAAGGGGAACGAGAGGAGGGAC
GCGGAGTGGTTCCAAAGGACGGCTGATCGAGAAGGGCGCGGCCAGCTCGC
GTTTTTCGAAGACCCGGCCTTTTACATCGCCGTCTCCGTGCTCGCCCCGC
TGGTAATCCTGACCTGGGGTGTGCTGAATTGCTACATCCCTGGTTTCTGC
CCCGTTACTCTGTAGATGACGATGATGCTCGCGCAGACGAGGCTGGTGGT
GGTACCGGTCGCGTTGTTAATGCTCCTATCCGCCACAGCTATCGAGGCAT
TTGCGTTCACCGCGTTGACCACCGATGCACGACGATACTGCCGTGAGGGG
CCTATGTCTTCTCCTCCGGGGGCCAAGAGCGGGCGGAAAGCGTGGGCGAG
GACGGCCAAGCCGGACAGCAAGGACAGCGGAAACGACAACAAGCTAGACG
TCCTCACCGGGAGCGGCCTACGCGGGATGGACACGAGCAAGCTCAAGGGG
AACGAGAGGAGGGACGCGGAGTGGTTCCAAAGGACGGCTGATCGAGAAGG
GCGCGGCCAGCTCGCGTTTTTCGAAGACCCGGCCTTTTACATCGCCGTCT
CCGTGCTCGCCCCGCTGGTAATCCTGACCTGGGGTGTGCTGAATTGCTAC
ATCCCTGGTTTCTGCCCCGTTACTCTGTAG
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