mRNA_P-fluviatile_contig1.83.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.83.1
Unique NamemRNA_P-fluviatile_contig1.83.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.83.1 vs. uniprot
Match: D7FJK4_ECTSI (TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.090e-20
Identity = 137/224 (61.16%), Postives = 144/224 (64.29%), Query Frame = 1 
Query:   28 MDDHRFTKAITYYREKLKQNPTNPALHHHLAPLMLQGGNVRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKHGRRAVELKPRNPLGHRVLGQILDQMGNSSMSLHHRKIAVLRGPGSAGESGRRVYDPHDTHTYKKIGTQLVTQGGAERGNSHLFVDYYRAVKGKSVVLANSERTYEILDKC 699
            M D RFT AI YYREKLKQNP+NPA HH++APL+ +GGNVR+A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                           HDTHTYKKIG QLVT G AER NSH FVD YRA+ GK V LA SERT E L KC
Sbjct:    1 MSDPRFTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGNVRAAMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQAERENSHAFVDCYRAMAGKQVELATSERTNECLCKC 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJK4_ECTSI4.090e-2061.16TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1208894..1211086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2880.D7FJK4
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006440.1
Exons2
Model size714
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.83.1prot_P-fluviatile_contig1.83.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1208894..1211059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.1835856-CDS-P-fluviatile_contig1:1208893..12095231622815284.1835856-CDS-P-fluviatile_contig1:1208893..1209523Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1208894..1209523 -
1693561385.9545794-CDS-P-fluviatile_contig1:1208893..12095231693561385.9545794-CDS-P-fluviatile_contig1:1208893..1209523Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1208894..1209523 -
1622815284.1948955-CDS-P-fluviatile_contig1:1211002..12110591622815284.1948955-CDS-P-fluviatile_contig1:1211002..1211059Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1211003..1211059 -
1693561385.965679-CDS-P-fluviatile_contig1:1211002..12110591693561385.965679-CDS-P-fluviatile_contig1:1211002..1211059Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1211003..1211059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.205864-UTR-P-fluviatile_contig1:1211059..12110861622815284.205864-UTR-P-fluviatile_contig1:1211059..1211086Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1211060..1211086 -
1693561385.974993-UTR-P-fluviatile_contig1:1211059..12110861693561385.974993-UTR-P-fluviatile_contig1:1211059..1211086Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1211060..1211086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.83.1

>prot_P-fluviatile_contig1.83.1 ID=prot_P-fluviatile_contig1.83.1|Name=mRNA_P-fluviatile_contig1.83.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=229bp
MDDHRFTKAITYYREKLKQNPTNPALHHHLAPLMLQGGNVRSAIHHFRRA
VQLNPNDVNSKNDLAAILWRLGRWEAALAALCQVVMANSEHYEANVNLAA
VYSSKGECDLALKHGRRAVELKPRNPLGHRVLGQILDQMGNSSMSLHHRK
IAVLRGPGSAGESGRRVYDPHDTHTYKKIGTQLVTQGGAERGNSHLFVDY
YRAVKGKSVVLANSERTYEILDKCLGQG*
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mRNA from alignment at P-fluviatile_contig1:1208894..1211086-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.83.1 ID=mRNA_P-fluviatile_contig1.83.1|Name=mRNA_P-fluviatile_contig1.83.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2193bp|location=Sequence derived from alignment at P-fluviatile_contig1:1208894..1211086- (Porterinema fluviatile SAG_2381)
TCGTACTTGAGACGACCCCAGGGCAAAATGGACGATCATCGATTCACCAA
AGCCATAACGTACTACCGAGAGAAACTCAAGCAGGTATGTTTTCGCGGAA
GGGATCTGTAGTGCTGCACCCTTTTGGTGGGCTGTCCACGACGTTTTCGA
GTGTTTGTGCTTCGAAAATATTGGTGTAGTATAGTCTCCTCATCAAAGTA
ACTAGTCTACGCATTGCGGAAGGACGAACCGACGAAGGAAGAAGAAGCAG
ACGAGAGTTTACGGACCGTGTTGCACGGCACGTAGCGGATTGATACTCAA
TGCAAAACCCTTCACCCCCCACTCCCCCAAAGAGCTGTGACGACGTGTGA
TACTAGGTTGCTGGTTAGTCTATGTGTGAAAAGGGTGTTTGCCCGACACG
AGATAAGGTGCCCCAAGCCTTATATACTGACATGTGGTACCCACATACCC
CCCCGGATACGAGCGAGCGGACAGCTCAGCATCGTAGACAAATACGCGGG
TACCACGACGCACCCCCCGTAGCATGTACGGTAATCGGAACCCGACCGGC
TGGCGGCGGACAAAAAACCACTTTCACGTGCCCGGATTCGAACTCGGGAC
TTCATCATTGCAGGGGTGACAATCCTGCCGTCGACGCCACTTGTGGAAAG
GGTGTTTGCCCGACACGAGATAAGGTGCCCCAAGCCTTATATACTGACAT
GTGGTACCCACATATGCTTGTTTGTTTTTTTGGTGTGTTTGTACGCATTG
GCCTTTACTTCCCTTCTGCGAATAGACTACCGTGTTCCCGGCCTACGTCT
CGCAACACTCGCTGACCCTCGAAGGATAGAGACGCACCGGTAGCACGGGG
CATTTATTTTTTCTTATACGAAGTAGCATATGTATTCCCTCTCCCGTGCG
GCTCCATACGCTTGATAATCGGGGTCGAGGACTCGATTTGTCTGCCTGGC
CGGCGTGAACCCGGCACGGAATACCTTGGCAGTGTAGAGGTACTTAATGT
AGGACCTGGGCGTGTGTACCCCCGGAGTCGGTGATGTTGATATTTCCGAT
CTTATTTTTTTTTATTTCTACCTCTCATCGCGCGCAGAGGGGAGCGGAGG
GCTCCAGACTGTGTGCTTCGAAGTTTGTTGGAGGCGACACAATTTTGTAG
CTCTGTTGACCCTTCGGGTCCATATTATTTTTCAGCGTCCCTTTCTAGGG
TAAGTTACCTTGTGACCACGGGAATTGGCCGTGTCTGTTGGAACAGTACG
GACGTATGGAGGTACTTGGCGGAGAGACCGGGATGATTTATAGTGTGACG
ACAACACACACGCATTGTCGTATTCATGTAGTCAGTAACAGTTTGTTTGT
ATCCGTCCCCGCGTTGACGCTGCACGCCATGACGTCCCAGGGCGATCTGT
GCGTCCTTGTAGTAACTCTCCTGGTACGTGTGGATACGCGCCCTACCTCT
TCCTCTGGCAAATTATTTATCACCACGATCGATCGTCGATTGAGAAAGCG
TGCCGCGCGGATTGCCCGACCACGAAGAAAAGCCAAACCAAAAACACGTT
TGTTTCTCGCCAGAATCCCACCAATCCAGCGCTTCACCACCACCTGGCAC
CTCTTATGCTTCAAGGAGGGAACGTGAGGTCCGCGATACACCACTTCCGC
CGAGCAGTCCAACTGAATCCCAACGACGTCAACTCCAAGAATGACTTGGC
TGCCATTCTTTGGCGACTGGGCAGATGGGAAGCCGCTTTAGCCGCGCTAT
GTCAAGTCGTCATGGCCAACAGTGAGCACTACGAAGCAAACGTCAATTTA
GCGGCAGTGTATTCTTCGAAGGGTGAGTGCGATCTTGCTTTGAAACATGG
ACGAAGAGCCGTGGAGCTGAAACCTCGAAATCCTCTAGGCCACCGCGTTT
TGGGGCAGATTTTGGACCAAATGGGCAACTCTTCGATGTCTCTTCACCAT
CGCAAGATTGCCGTGCTTAGAGGGCCAGGCTCGGCGGGTGAGTCTGGGAG
GAGGGTATACGACCCGCACGACACTCATACCTACAAAAAGATCGGGACGC
AGCTGGTTACGCAGGGCGGAGCGGAACGCGGTAATAGTCATCTATTTGTA
GACTACTATCGGGCGGTGAAAGGAAAATCTGTTGTGCTAGCTAACTCGGA
GAGAACGTATGAGATTTTAGACAAGTGCCTGGGACAAGGGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1208894..1211086-

>mRNA_P-fluviatile_contig1.83.1 ID=mRNA_P-fluviatile_contig1.83.1|Name=mRNA_P-fluviatile_contig1.83.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1374bp|location=Sequence derived from alignment at P-fluviatile_contig1:1208894..1211086- (Porterinema fluviatile SAG_2381)
ATGGACGATCATCGATTCACCAAAGCCATAACGTACTACCGAGAGAAACT
CAAGCAGATGGACGATCATCGATTCACCAAAGCCATAACGTACTACCGAG
AGAAACTCAAGCAGAATCCCACCAATCCAGCGCTTCACCACCACCTGGCA
CCTCTTATGCTTCAAGGAGGGAACGTGAGGTCCGCGATACACCACTTCCG
CCGAGCAGTCCAACTGAATCCCAACGACGTCAACTCCAAGAATGACTTGG
CTGCCATTCTTTGGCGACTGGGCAGATGGGAAGCCGCTTTAGCCGCGCTA
TGTCAAGTCGTCATGGCCAACAGTGAGCACTACGAAGCAAACGTCAATTT
AGCGGCAGTGTATTCTTCGAAGGGTGAGTGCGATCTTGCTTTGAAACATG
GACGAAGAGCCGTGGAGCTGAAACCTCGAAATCCTCTAGGCCACCGCGTT
TTGGGGCAGATTTTGGACCAAATGGGCAACTCTTCGATGTCTCTTCACCA
TCGCAAGATTGCCGTGCTTAGAGGGCCAGGCTCGGCGGGTGAGTCTGGGA
GGAGGGTATACGACCCGCACGACACTCATACCTACAAAAAGATCGGGACG
CAGCTGGTTACGCAGGGCGGAGCGGAACGCGGTAATAGTCATCTATTTGT
AGACTACTATCGGGCGGTGAAAGGAAAATCTGTTGTGCTAGCTAACTCGG
AGAGAACGTATGAGATTTTAGACAAGTGCCTGGGACAAGGGTAGAATCCC
ACCAATCCAGCGCTTCACCACCACCTGGCACCTCTTATGCTTCAAGGAGG
GAACGTGAGGTCCGCGATACACCACTTCCGCCGAGCAGTCCAACTGAATC
CCAACGACGTCAACTCCAAGAATGACTTGGCTGCCATTCTTTGGCGACTG
GGCAGATGGGAAGCCGCTTTAGCCGCGCTATGTCAAGTCGTCATGGCCAA
CAGTGAGCACTACGAAGCAAACGTCAATTTAGCGGCAGTGTATTCTTCGA
AGGGTGAGTGCGATCTTGCTTTGAAACATGGACGAAGAGCCGTGGAGCTG
AAACCTCGAAATCCTCTAGGCCACCGCGTTTTGGGGCAGATTTTGGACCA
AATGGGCAACTCTTCGATGTCTCTTCACCATCGCAAGATTGCCGTGCTTA
GAGGGCCAGGCTCGGCGGGTGAGTCTGGGAGGAGGGTATACGACCCGCAC
GACACTCATACCTACAAAAAGATCGGGACGCAGCTGGTTACGCAGGGCGG
AGCGGAACGCGGTAATAGTCATCTATTTGTAGACTACTATCGGGCGGTGA
AAGGAAAATCTGTTGTGCTAGCTAACTCGGAGAGAACGTATGAGATTTTA
GACAAGTGCCTGGGACAAGGGTAG
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