mRNA_P-fluviatile_contig8.14632.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14632.1
Unique NamemRNA_P-fluviatile_contig8.14632.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14632.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.050e-45
Identity = 94/136 (69.12%), Postives = 105/136 (77.21%), Query Frame = 2 
Query:  413 RSPPQPPSPV----DPQSQTDAFRRLYDAFLFLALAFSVLEALMFRLGRRRIASNQADRWRRDRGIGLGGRGGGSFLSTGALESLLDEEDVAGRRSGWEDWHGATVEQNLLMEQRYEQLRRSNLEKNEGLLEHTRG 808
            R  P PPSPV    DP+SQ D+FRRLYDAFL +ALAFSVLEALMFRLG RRIA+N A+R RR +G G       S +    +ESLLDEEDV  RR+GWEDW G TV+Q L+MEQRYEQLRRSNLEKNEGLLEHTRG
Sbjct:   91 RPHPGPPSPVPGGDDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAAN-AERHRRAQGFGE------SLVYGSGMESLLDEEDV--RRNGWEDWRGDTVQQGLMMEQRYEQLRRSNLEKNEGLLEHTRG 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKX3_ECTSI3.050e-4569.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3373632..3376414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005900.1
Exons4
Model size808
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14632.1prot_P-fluviatile_contig8.14632.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3374348..3376414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.5985723-UTR-P-fluviatile_contig8:3373631..33737151622817258.5985723-UTR-P-fluviatile_contig8:3373631..3373715Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3373632..3373715 -
1693571771.0476944-UTR-P-fluviatile_contig8:3373631..33737151693571771.0476944-UTR-P-fluviatile_contig8:3373631..3373715Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3373632..3373715 -
1622817258.6100242-UTR-P-fluviatile_contig8:3374343..33743471622817258.6100242-UTR-P-fluviatile_contig8:3374343..3374347Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3374344..3374347 -
1693571771.0602129-UTR-P-fluviatile_contig8:3374343..33743471693571771.0602129-UTR-P-fluviatile_contig8:3374343..3374347Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3374344..3374347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.6215177-CDS-P-fluviatile_contig8:3374347..33747131622817258.6215177-CDS-P-fluviatile_contig8:3374347..3374713Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3374348..3374713 -
1693571771.0722005-CDS-P-fluviatile_contig8:3374347..33747131693571771.0722005-CDS-P-fluviatile_contig8:3374347..3374713Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3374348..3374713 -
1622817258.633528-CDS-P-fluviatile_contig8:3375337..33754511622817258.633528-CDS-P-fluviatile_contig8:3375337..3375451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3375338..3375451 -
1693571771.0840204-CDS-P-fluviatile_contig8:3375337..33754511693571771.0840204-CDS-P-fluviatile_contig8:3375337..3375451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3375338..3375451 -
1622817258.6454756-CDS-P-fluviatile_contig8:3376174..33764141622817258.6454756-CDS-P-fluviatile_contig8:3376174..3376414Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3376175..3376414 -
1693571771.0967934-CDS-P-fluviatile_contig8:3376174..33764141693571771.0967934-CDS-P-fluviatile_contig8:3376174..3376414Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3376175..3376414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14632.1

>prot_P-fluviatile_contig8.14632.1 ID=prot_P-fluviatile_contig8.14632.1|Name=mRNA_P-fluviatile_contig8.14632.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=240bp
MRNRFASNTRVRLHRELSSPSFVPLTIFRGIAGIAFLCFGELFWMHLSRL
GLEGEGKMLGTIALLLGSVMAIGALCGAAGFSADEGGRLPLLAAVYLSAP
LSLADLLGAVVFAWKREEVLRLDLEHEKTHGGGRRPGPLPPAAAEPRRPP
VPDRRLPAPLRCFPLPCPCLLRAGGAHVPVGPPADRVQPGGPVAPRPGDR
PRGKGGRKLPVDRRARVAARRGGRRREAFGVGGLARGDG*
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mRNA from alignment at P-fluviatile_contig8:3373632..3376414-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14632.1 ID=mRNA_P-fluviatile_contig8.14632.1|Name=mRNA_P-fluviatile_contig8.14632.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2783bp|location=Sequence derived from alignment at P-fluviatile_contig8:3373632..3376414- (Porterinema fluviatile SAG_2381)
ATGAGGAATCGGTTCGCTTCGAACACGAGGGTGAGACTCCACCGCGAGTT
ATCAAGCCCGTCCTTCGTTCCGCTCACCATCTTCCGGGGAATAGCAGGGA
TCGCTTTCCTGTGTTTTGGGGAGCTGTTTTGGATGCACCTGTCCCGCCTC
GGGCTGGAGGGAGAGGGCAAGATGCTCGGGACGATTGCGCTCCTTCTGGG
GTCGGTAATGGCGATCGGGGCGCTGTGCGGGGCAGCGGGCGTGTCGGCGA
GTACATGGCGCTATTGTTTGATGCGGTTCGAGTTGTATGGGAGGTACTAT
TGCTGTGTGCTGCTGCTGCTGTGTGCTGCTGCCGCTGCTGCTATGTGCTC
AGCACACGGACAAACACACCCACTAATCTAATGCTGCTGGATCGGGCCGG
TGTCGCCAGATACATCTTTGAGGAATAAGCGACACCGGATATTGTACAAG
CGAGGGGTAACGTGTTCAGCGTCCTGCTGTCAATCGAGCTTTTGTTGTAG
AGGTGTGTGGGTGGGTGCGGAGTACTGGAGTCATCCCGCGAGTGTCGAGG
GGGAATGAATTAGGCTGCATCGGGATGAACATTGATCAACCAGCACTTTG
GTATTCGAGCACAACCTACAATCCACCTGCTCGTGGCTCTTTCCTGCTGG
GGAGTGTCACAAGATCCACCCGAGCGCGCAGGCTTTTCGTACCATCATTT
ACGTAAACGCTGGCTCTATGCCGCCGTTGTGCCGCCGAAGTGAGAGCATT
GCTACGTGTACGCTATCGTTCCAGGATTTGTCTCTCGTGACACCCTTGGT
TTTCCATGTCTTTCCCCCTGTCACCTCGGCCCGTACTCAGGGAGGACCTT
GTACAACGCCGGTGTCACACAGGACCAGTCTCATCTTCACCTATTCGCTC
AGCCCCACTTGATATCTCTTCTCCATCTCATTCCCCGCGCTCGTTTCCCG
TTCGTTGCGTCAGTTCTCCGCGGATGAGGGGGGACGGCTGCCCCTCCTAG
CCGCGGTGTACCTCTCCGCTCCCTTGTCCTTGGCGGATCTGTTGGGAGCC
GTAGTCTTCGCGTGGAAGCGGGAAGAGGTGAGACCAAACGCATGCCTGAC
TCATCGCGAATGTGCGCGAGAGAGGGAACTTTGCCGGGGGTCCGATTGAG
GTGAAGATCGCGAGTGTCCCCTAGCGCATTTTGTTGCGCTTGGAAGATGA
AGCACACGAAATAGACAGAAATAATTTTCGGATAGGGCGAGGGGGGGCCT
TCGTTGACCACCCGCATCGTGACTTGTTAGACGGGGCCCGTGGCCAGAGA
CATTTGACGGTCCATACACGACTACTCTTTCACGAATGAGATTGTACGAC
GATCCCAAAACAAGCCGCAGATTTTCCGTTCTAGCGACGGGACGCCACAG
GACCGCGCCATGAGCGTGAGAATAGGCTGCGTCGTGAACGAAAGGAAAGC
ACACCACCACCATGGCTGGGGCGTCGATTGATGTCGAAAGCAACTCACGA
GAAACGAGGGGGCTGACGGCAACGCTGCGCTCACTCACAACGCGCGTTTG
CGACCTTGAACGTGAACGCCTCTCACCTCTCCTGTTCCCCCCACCCTCGC
CCACCCCCAACCCTCTCCGCCGCCATAACTCCCGACCTCGCAACCGCCTC
ATGAAACGCACACGAAAAACACGAACTCACAACAATCGCACCCATATGCA
GGTGCTCCGACTGGACCTGGAGCACGAGAAGACTCACGGGGGTGGCCGAC
GACCTGGTCCGCTCCCCCCCGCAGCCGCCGAGCCCCGTCGACCCCCAGTC
CCAGACCGACGCCTTCCGGCGCCTCTACGATGCTTTCCTCTTCCTTGCCC
TTGCCTTCTCCGTGCTGGAGGCGCTCATGTTCCGGTTGGGCCGCCGGCGG
ATCGCGTCCAACCAGGCGGACCGGTGGCGCCGCGACCGGGGGATAGGCCT
CGGGGGAAGGGGGGGCGGAAGCTTCCTGTCGACCGGCGCGCTCGAGTCGC
TGCTCGACGAGGAGGACGTCGCCGGGAGGCGTTCGGGGTGGGAGGATTGG
CACGGGGCGACGGTTGAGCAGGTATGGATACCCACAATGTCCGCAAGCAC
AAAAATCCTTCTCGTCATTGTTCAAAGGTAAAATGAAATAATTTTGGCGT
AGATGGTGGTACAGCGTACCGGTCTGCTGCTAAAATTCGAACAAAAAAAA
ATGGTTTGGAGAATCAGTCTCAATCTTTCATTTTGTTGAAAATTTTAAGT
GTATGTCTTTTGTGCCTGCGGTGACTGTATGCTTGAGTGTTTGAGGCGTG
GAGCGGTGACCGGGCCGTGTTGTCAGGGTGCGGGGTTGTCGAGGACGGGG
CGCTTGCCCAGTGTCCTGGTGGCTTGGTCGTGTGGTGCGATGTAAGTCGT
GTGGTGAGATGTACGTGTTGCTCGGCTTGTGGAAGGCCGCCATTTGTGTT
TGGTTTTGCGTTGTTTTTTTTAGGTTGTCGGCACTGGACGCAGGGTTCCT
TCCTGGCTGGGAGCTTTCGCAACTCGTGTGCATGCCCCCGCTTTCCCCTC
ACTCATTCCCCAGAAGGTGAGTCAAGATGTACAATTCTCTGCACAATTCC
CTGGTGGAAGGCGTTTGTTCTTGACGTCCCCTCTCTTTTTCGTGTCATCC
GACGCCCGTCGTGTCACGCCTTGTCATGTCACGCTATCTCGTGGTCCAGA
ACTTGCTGATGGAGCAGAGATACGAGCAGCTTCGGCGCAGCAACCTGGAG
AAGAATGAGGGGCTGCTGGAGCACACCAGGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3373632..3376414-

>mRNA_P-fluviatile_contig8.14632.1 ID=mRNA_P-fluviatile_contig8.14632.1|Name=mRNA_P-fluviatile_contig8.14632.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1440bp|location=Sequence derived from alignment at P-fluviatile_contig8:3373632..3376414- (Porterinema fluviatile SAG_2381)
ATGAGGAATCGGTTCGCTTCGAACACGAGGGTGAGACTCCACCGCGAGTT
ATCAAGCCCGTCCTTCGTTCCGCTCACCATCTTCCGGGGAATAGCAGGGA
TCGCTTTCCTGTGTTTTGGGGAGCTGTTTTGGATGCACCTGTCCCGCCTC
GGGCTGGAGGGAGAGGGCAAGATGCTCGGGACGATTGCGCTCCTTCTGGG
GTCGGTAATGGCGATCGGGGCGCTGTGCGGGGCAGCGGGCATGAGGAATC
GGTTCGCTTCGAACACGAGGGTGAGACTCCACCGCGAGTTATCAAGCCCG
TCCTTCGTTCCGCTCACCATCTTCCGGGGAATAGCAGGGATCGCTTTCCT
GTGTTTTGGGGAGCTGTTTTGGATGCACCTGTCCCGCCTCGGGCTGGAGG
GAGAGGGCAAGATGCTCGGGACGATTGCGCTCCTTCTGGGGTCGGTAATG
GCGATCGGGGCGCTGTGCGGGGCAGCGGGCTTCTCCGCGGATGAGGGGGG
ACGGCTGCCCCTCCTAGCCGCGGTGTACCTCTCCGCTCCCTTGTCCTTGG
CGGATCTGTTGGGAGCCGTAGTCTTCGCGTGGAAGCGGGAAGAGTTCTCC
GCGGATGAGGGGGGACGGCTGCCCCTCCTAGCCGCGGTGTACCTCTCCGC
TCCCTTGTCCTTGGCGGATCTGTTGGGAGCCGTAGTCTTCGCGTGGAAGC
GGGAAGAGGTGCTCCGACTGGACCTGGAGCACGAGAAGACTCACGGGGGT
GGCCGACGACCTGGTCCGCTCCCCCCCGCAGCCGCCGAGCCCCGTCGACC
CCCAGTCCCAGACCGACGCCTTCCGGCGCCTCTACGATGCTTTCCTCTTC
CTTGCCCTTGCCTTCTCCGTGCTGGAGGCGCTCATGTTCCGGTTGGGCCG
CCGGCGGATCGCGTCCAACCAGGCGGACCGGTGGCGCCGCGACCGGGGGA
TAGGCCTCGGGGGAAGGGGGGGCGGAAGCTTCCTGTCGACCGGCGCGCTC
GAGTCGCTGCTCGACGAGGAGGACGTCGCCGGGAGGCGTTCGGGGTGGGA
GGATTGGCACGGGGCGACGGTTGAGTGCTCCGACTGGACCTGGAGCACGA
GAAGACTCACGGGGGTGGCCGACGACCTGGTCCGCTCCCCCCCGCAGCCG
CCGAGCCCCGTCGACCCCCAGTCCCAGACCGACGCCTTCCGGCGCCTCTA
CGATGCTTTCCTCTTCCTTGCCCTTGCCTTCTCCGTGCTGGAGGCGCTCA
TGTTCCGGTTGGGCCGCCGGCGGATCGCGTCCAACCAGGCGGACCGGTGG
CGCCGCGACCGGGGGATAGGCCTCGGGGGAAGGGGGGGCGGAAGCTTCCT
GTCGACCGGCGCGCTCGAGTCGCTGCTCGACGAGGAGGACGTCGCCGGGA
GGCGTTCGGGGTGGGAGGATTGGCACGGGGCGACGGTTGA
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