mRNA_P-fluviatile_contig11.1205.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1205.1
Unique NamemRNA_P-fluviatile_contig11.1205.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1205.1 vs. uniprot
Match: A0A6H5L1D6_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.720e-8
Identity = 45/99 (45.45%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:  205 RRCHVM---RKHSRVSGAWMVATEGPPPAAAVSP--------------LSLPKAAAAAEPPAGSG----SPRAHKLKVATFFFFWYTFNVGYNLCTKFT 438
            RRCHV    R   R + A MVATEG     ++SP                   + A  EP A +     S RAH+L+V TFFF WYTFNVGYNLCTKFT
Sbjct:   80 RRCHVSTARRSSVRKARARMVATEGS--RVSMSPEKPXXXXXXXXXXXXXXXVSKAGDEPDAAAAGTAESARAHRLRVTTFFFLWYTFNVGYNLCTKFT 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1D6_9PHAE9.720e-845.45TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2496424..2498419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.8591385-CDS-P-fluviatile_contig11:2496423..24967481622815426.8591385-CDS-P-fluviatile_contig11:2496423..2496748Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2496424..2496748 +
1693561809.459722-CDS-P-fluviatile_contig11:2496423..24967481693561809.459722-CDS-P-fluviatile_contig11:2496423..2496748Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2496424..2496748 +
1622815426.8729525-CDS-P-fluviatile_contig11:2498303..24984191622815426.8729525-CDS-P-fluviatile_contig11:2498303..2498419Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2498304..2498419 +
1693561809.4685807-CDS-P-fluviatile_contig11:2498303..24984191693561809.4685807-CDS-P-fluviatile_contig11:2498303..2498419Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2498304..2498419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1205.1prot_P-fluviatile_contig11.1205.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2496424..2498419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1205.1

>prot_P-fluviatile_contig11.1205.1 ID=prot_P-fluviatile_contig11.1205.1|Name=mRNA_P-fluviatile_contig11.1205.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=147bp
MKPSPLKDVAMGKERGVRARRRTAGSSRRCAVLLSMYALLSCLDNVCALR
GCPHVGRHIAKRGNPSCARRCHVMRKHSRVSGAWMVATEGPPPAAAVSPL
SLPKAAAAAEPPAGSGSPRAHKLKVATFFFFWYTFNVGYNLCTKFT*
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mRNA from alignment at P-fluviatile_contig11:2496424..2498419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1205.1 ID=mRNA_P-fluviatile_contig11.1205.1|Name=mRNA_P-fluviatile_contig11.1205.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1996bp|location=Sequence derived from alignment at P-fluviatile_contig11:2496424..2498419+ (Porterinema fluviatile SAG_2381)
ATGAAACCTAGCCCACTGAAGGACGTGGCCATGGGGAAAGAGAGGGGTGT
GCGTGCTCGCAGAAGAACAGCGGGCAGCAGTAGAAGATGTGCCGTCCTTT
TGTCAATGTACGCGCTTCTGTCATGTCTTGACAACGTATGTGCACTGAGG
GGCTGCCCTCATGTGGGCCGCCACATAGCCAAGAGAGGCAATCCCAGCTG
CGCGAGGAGATGCCATGTTATGAGGAAACACAGCCGTGTCAGTGGCGCTT
GGATGGTGGCGACAGAGGGACCGCCACCGGCGGCTGCGGTGTCGCCGCTG
TCGCTTCCGAAGGCAGCTGCAGCAGGTGTGTGTGTGTGTGTGTGTGATTG
TGTAAAACCAGACAGTCACGTCTTTCGCTGACCCCATTTCGGGTAGCCCT
CCCCATCTCTTATTGTGCGGCTGTGCGCGTGTTTCGATGAGCGCAATCGC
TTGAGGTTGACATCAACGACGAAATACAAATCAAATTGTCTCCTTATACA
TACTTGTACAGCTGTGTCCGATTTCAAATCTGCTGCGTGCCTCCGCACAC
ACACAGCTGCAGGAGACACATGATAATGTTCCAAGGACGCTCATACCGCT
TACGGTCCGCTCCATACAGCATCATCCACGTCGAGAGAGAGCTGCGCGGT
CGTTTGCCTTCGAAGGGTGGAAGCTGCACGGCTTAACGCCTTTCTCTTAC
GGTCACGGGTGGTTGGTCACGCTCTCAACTCTGATGTACTTTCAAAGTAC
TCCGGAGGGAGTATTTTTTTTCCACACGAAGAGAGCGTCCGCGAGTACTA
TACTGTAGGTCGCATGAGATTTCACACGCCCATGGTCGATTGTCAACGCC
TACAACACATCCGAGCTTGCGTGAGGACCTCAGAGATACACAAAAGAGAA
AGTGAAGAGGAATCATGACAGGTAGGCAATCGGCGCTCCTGCACCGAAGA
AACGCCGTCGTGAACTTTGATGTAGGAATTCCGCGATAGCGCGGAGAGCT
TTCTTCAGTGTAAGAATCACACTCTTGAAATTGTTATCGCGGTCGTCCCG
TCTTGGGGGCGTGTTATACAGATTTGCTGTCGTATTAAAACCCGCAAAGA
CTGCCGCCTTTTTATTGGTCAGCCGCTTGCGCGGTTAGAAGTTGAAAATA
ACATGTACACAAGTACGCACACACCGGCAAAACCGGATGTTGTGCGCGTG
ATTTTTGGGACCCAGTTTGGCCGACTTGCTCACAACGACGAGACTGTGAG
CGGATAGGGACGGCCTTGATCCACAGGAGGCGGCCGCGATCGTCCCACAC
GTCCACGTCGATCGCTCAAAACCGAAGCCGCCAGAGCCAACTCTTGTCGC
GGGATCAGGAAAATCTCAGACATGTCAAGCGTACGATTCTTCCGGCGCTG
TGAGAATCGGGGTCTTGGAACACCCCTGAAATTGTAATCAATGTACTAGT
GTTCACCTTTTCCACAACCTAGAGGGTGCCAGTGTCGAGCAGGATACCCA
GGATATGTTTTTTTCCAAACCTATGTTTTGAACGTATCTGTTGTCTTAAT
CCGTCGGTCGGGGGGCAATCGAGCTTTGAAATCTGGGCTAGGGGATGCGC
CAAGACCCCGGGTCTTGAGGGAGTTCATGAAGACATTCGCCCACGTGGCA
TTTCAACGATAGGCGGTGTACCCCTACAGCGACCCATGTCAACCCCTTGT
GAAGGCCCGTCGTTCTTATACTTCAAAGTATCGGCAGTCAGTTGCAATGT
TGTGGGACCACATGCCCCCACGTTGCAGAGTGATCCCTCGTTTGTTTGAC
ACCATGTGTGCGCCAGTTGAGAGCGCGGAGCTTGATTGTGCAATAAACCC
TCGGTGAAACTACTTCCTCCACGACCACAGCGGAGCCGCCGGCTGGCTCT
GGAAGTCCAAGGGCTCACAAGCTTAAGGTGGCGACCTTCTTCTTCTTCTG
GTACACCTTCAACGTGGGCTACAACCTCTGCACGAAATTCACGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2496424..2498419+

>mRNA_P-fluviatile_contig11.1205.1 ID=mRNA_P-fluviatile_contig11.1205.1|Name=mRNA_P-fluviatile_contig11.1205.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=882bp|location=Sequence derived from alignment at P-fluviatile_contig11:2496424..2498419+ (Porterinema fluviatile SAG_2381)
ATGAAACCTAGCCCACTGAAGGACGTGGCCATGGGGAAAGAGAGGGGTGT
GCGTGCTCGCAGAAGAACAGCGGGCAGCAGTAGAAGATGTGCCGTCCTTT
TGTCAATGTACGCGCTTCTGTCATGTCTTGACAACGTATGTGCACTGAGG
GGCTGCCCTCATGTGGGCCGCCACATAGCCAAGAGAGGCAATCCCAGCTG
CGCGAGGAGATGCCATGTTATGAGGAAACACAGCCGTGTCAGTGGCGCTT
GGATGGTGGCGACAGAGGGACCGCCACCGGCGGCTGCGGTGTCGCCGCTG
TCGCTTCCGAAGGCAGCTGCAGCAGATGAAACCTAGCCCACTGAAGGACG
TGGCCATGGGGAAAGAGAGGGGTGTGCGTGCTCGCAGAAGAACAGCGGGC
AGCAGTAGAAGATGTGCCGTCCTTTTGTCAATGTACGCGCTTCTGTCATG
TCTTGACAACGTATGTGCACTGAGGGGCTGCCCTCATGTGGGCCGCCACA
TAGCCAAGAGAGGCAATCCCAGCTGCGCGAGGAGATGCCATGTTATGAGG
AAACACAGCCGTGTCAGTGGCGCTTGGATGGTGGCGACAGAGGGACCGCC
ACCGGCGGCTGCGGTGTCGCCGCTGTCGCTTCCGAAGGCAGCTGCAGCAG
CGGAGCCGCCGGCTGGCTCTGGAAGTCCAAGGGCTCACAAGCTTAAGGTG
GCGACCTTCTTCTTCTTCTGGTACACCTTCAACGTGGGCTACAACCTCTG
CACGAAATTCACGTGACGGAGCCGCCGGCTGGCTCTGGAAGTCCAAGGGC
TCACAAGCTTAAGGTGGCGACCTTCTTCTTCTTCTGGTACACCTTCAACG
TGGGCTACAACCTCTGCACGAAATTCACGTGA
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