mRNA_P-fluviatile_contig105.956.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig105.956.1
Unique NamemRNA_P-fluviatile_contig105.956.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig105.956.1 vs. uniprot
Match: Q8QKW5_ESV1K (EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K)

HSP 1 Score: 112 bits (279), Expect = 6.720e-31
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 MIQLPVEAVVVGLVIMLAKYPCGVIALRILPMKGDDHHPVMYLSLFLTGLVVHLALEVLKVNKWYCLHGFSCLK 222
            MI+L +EAVVVG+V+MLA YPCG++A ++LPMKGDDH PVMYLSLFLTGL  HL  EVLK+N WYC  GF+C K
Sbjct:    1 MIRLVIEAVVVGVVMMLAGYPCGLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLLFEVLKINLWYCSKGFACSK 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig105.956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKW5_ESV1K6.720e-3170.27EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig105contigP-fluviatile_contig105:13376..13600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-15
Ec32 orthologEc-06_006580.1
Hectar predicted targeting categorysignal peptide
Exons1
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.881356-CDS-P-fluviatile_contig105:13375..136001622815422.881356-CDS-P-fluviatile_contig105:13375..13600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig105 13376..13600 +
1693561798.8420725-CDS-P-fluviatile_contig105:13375..136001693561798.8420725-CDS-P-fluviatile_contig105:13375..13600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig105 13376..13600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig105.956.1prot_P-fluviatile_contig105.956.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig105 13376..13600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig105.956.1

>prot_P-fluviatile_contig105.956.1 ID=prot_P-fluviatile_contig105.956.1|Name=mRNA_P-fluviatile_contig105.956.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=75bp
MIQLPVEAVVVGLVIMLAKYPCGVIALRILPMKGDDHHPVMYLSLFLTGL
VVHLALEVLKVNKWYCLHGFSCLK*
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mRNA from alignment at P-fluviatile_contig105:13376..13600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig105.956.1 ID=mRNA_P-fluviatile_contig105.956.1|Name=mRNA_P-fluviatile_contig105.956.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=225bp|location=Sequence derived from alignment at P-fluviatile_contig105:13376..13600+ (Porterinema fluviatile SAG_2381)
ATGATCCAACTACCAGTCGAAGCCGTCGTTGTTGGCCTGGTGATCATGCT
GGCAAAATACCCCTGTGGTGTTATTGCCCTCCGAATTTTGCCGATGAAGG
GGGACGATCATCATCCGGTCATGTACCTTAGCCTCTTTCTGACGGGGTTG
GTCGTGCACCTTGCGCTTGAGGTGTTGAAGGTAAACAAATGGTACTGTTT
GCACGGATTTTCATGTTTGAAGTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig105:13376..13600+

>mRNA_P-fluviatile_contig105.956.1 ID=mRNA_P-fluviatile_contig105.956.1|Name=mRNA_P-fluviatile_contig105.956.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=450bp|location=Sequence derived from alignment at P-fluviatile_contig105:13376..13600+ (Porterinema fluviatile SAG_2381)
ATGATCCAACTACCAGTCGAAGCCGTCGTTGTTGGCCTGGTGATCATGCT
GGCAAAATACCCCTGTGGTGTTATTGCCCTCCGAATTTTGCCGATGAAGG
GGGACGATCATCATCCGGTCATGTACCTTAGCCTCTTTCTGACGGGGTTG
GTCGTGCACCTTGCGCTTGAGGTGTTGAAGGTAAACAAATGGTACTGTTT
GCACGGATTTTCATGTTTGAAGTAAATGATCCAACTACCAGTCGAAGCCG
TCGTTGTTGGCCTGGTGATCATGCTGGCAAAATACCCCTGTGGTGTTATT
GCCCTCCGAATTTTGCCGATGAAGGGGGACGATCATCATCCGGTCATGTA
CCTTAGCCTCTTTCTGACGGGGTTGGTCGTGCACCTTGCGCTTGAGGTGT
TGAAGGTAAACAAATGGTACTGTTTGCACGGATTTTCATGTTTGAAGTAA
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