mRNA_P-lacustris_contig1000.119.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.119.1
Unique NamemRNA_P-lacustris_contig1000.119.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1000.119.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.150e-30
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:  375 LFPFITKGAVGNANTGGSTHKEVKKSAASASGRDNPVHMFRAWNDNHGLKALCDGVRWRVRGREDGVEVEKELTAGP 605
             F F TKGAVGNAN G S HKEVKKSA SASGRDNPVH+FR WND   LKALCDGVRW  +GR  GVEV KELTAGP
Sbjct:   24 FFFFRTKGAVGNANFGESKHKEVKKSATSASGRDNPVHIFRTWNDTQALKALCDGVRWSAKGRVGGVEVTKELTAGP 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYK1_9PHAE1.150e-3076.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:28745..29349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8602273-UTR-P-lacustris_contig1000:28744..290281622815268.8602273-UTR-P-lacustris_contig1000:28744..29028Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 28745..29028 +
1693493440.1556163-UTR-P-lacustris_contig1000:28744..290281693493440.1556163-UTR-P-lacustris_contig1000:28744..29028Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 28745..29028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8755505-CDS-P-lacustris_contig1000:29028..293491622815268.8755505-CDS-P-lacustris_contig1000:29028..29349Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 29029..29349 +
1693493440.1678116-CDS-P-lacustris_contig1000:29028..293491693493440.1678116-CDS-P-lacustris_contig1000:29028..29349Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 29029..29349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.119.1prot_P-lacustris_contig1000.119.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 29029..29349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.119.1

>prot_P-lacustris_contig1000.119.1 ID=prot_P-lacustris_contig1000.119.1|Name=mRNA_P-lacustris_contig1000.119.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=107bp
MSHLRYYAAGMSHRPVLVGTTNPPIPTSPGLFPFITKGAVGNANTGGSTH
KEVKKSAASASGRDNPVHMFRAWNDNHGLKALCDGVRWRVRGREDGVEVE
KELTAGP
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mRNA from alignment at P-lacustris_contig1000:28745..29349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.119.1 ID=mRNA_P-lacustris_contig1000.119.1|Name=mRNA_P-lacustris_contig1000.119.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=605bp|location=Sequence derived from alignment at P-lacustris_contig1000:28745..29349+ (Pleurocladia lacustris SAG_25_93)
CAGGTAAAGAAGGCGTCGCGTGTCCTTGGGCTGGAGCTGGGACCGTTTCA
CAAATGTTTACATATAGCTGACGATATTCGCAACCTTGTTGAGTCTTCTC
GTCTGCGCCCCGAATGGTTGGCCTGGCGCTGTTGAACTACCGATTTTGTC
GCGGTGTGGCGTTCCAAGCCGCCGATACGAAGGCTGCTGTGGCACACATA
CAAGCGCAGCATTCGCGATCTTCACCCCACAACGATGGCCACGGGGCTAC
GACACCGTGATAGTATGGGGACCACGCCCCTGGCATGTCACATTTACGCT
ATTACGCCGCTGGTATGTCACACCGACCTGTGTTGGTTGGAACGACGAAC
CCGCCCATTCCCACGTCCCCCGGTCTTTTTCCCTTCATAACGAAAGGTGC
GGTTGGCAACGCGAACACGGGCGGATCGACACACAAGGAGGTGAAGAAAT
CGGCGGCATCCGCGAGCGGCCGCGACAATCCGGTTCATATGTTCAGGGCA
TGGAATGACAATCATGGCTTGAAGGCGCTATGCGACGGCGTTAGGTGGCG
GGTGAGAGGTCGCGAAGACGGGGTCGAGGTTGAGAAGGAGTTGACTGCTG
GCCCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1000:28745..29349+

>mRNA_P-lacustris_contig1000.119.1 ID=mRNA_P-lacustris_contig1000.119.1|Name=mRNA_P-lacustris_contig1000.119.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=642bp|location=Sequence derived from alignment at P-lacustris_contig1000:28745..29349+ (Pleurocladia lacustris SAG_25_93)
ATGTCACATTTACGCTATTACGCCGCTGGTATGTCACACCGACCTGTGTT
GGTTGGAACGACGAACCCGCCCATTCCCACGTCCCCCGGTCTTTTTCCCT
TCATAACGAAAGGTGCGGTTGGCAACGCGAACACGGGCGGATCGACACAC
AAGGAGGTGAAGAAATCGGCGGCATCCGCGAGCGGCCGCGACAATCCGGT
TCATATGTTCAGGGCATGGAATGACAATCATGGCTTGAAGGCGCTATGCG
ACGGCGTTAGGTGGCGGGTGAGAGGTCGCGAAGACGGGGTCGAGGTTGAG
AAGGAGTTGACTGCTGGCCCCATGTCACATTTACGCTATTACGCCGCTGG
TATGTCACACCGACCTGTGTTGGTTGGAACGACGAACCCGCCCATTCCCA
CGTCCCCCGGTCTTTTTCCCTTCATAACGAAAGGTGCGGTTGGCAACGCG
AACACGGGCGGATCGACACACAAGGAGGTGAAGAAATCGGCGGCATCCGC
GAGCGGCCGCGACAATCCGGTTCATATGTTCAGGGCATGGAATGACAATC
ATGGCTTGAAGGCGCTATGCGACGGCGTTAGGTGGCGGGTGAGAGGTCGC
GAAGACGGGGTCGAGGTTGAGAAGGAGTTGACTGCTGGCCCC
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