mRNA_P-lacustris_contig1059.534.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1059.534.1
Unique NamemRNA_P-lacustris_contig1059.534.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1059.534.1 vs. uniprot
Match: D8LCD9_ECTSI (Bap31 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCD9_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 6.420e-85
Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 1 
Query:    1 MASNNLWPLLIKIIFPVPASFLLLVCLPLSTHGRIMRWMRKLFDKIFSFRVMGVPLIYLIMVSSCALFAAMCLETYGLRVREVNAVHFDEKMNLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKEMDSLNEQIKEMRRR 423
            MASNNLWPLLIKIIFP+PASFLLL+CLPLST  RIMRW R+L+DKIFSF+VM +PLIYLIM +SCALFAAMCLETYGLRVREVNA HFDEKMNLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKE+DSLNEQI+EMR+R
Sbjct:    1 MASNNLWPLLIKIIFPIPASFLLLICLPLSTQSRIMRWTRRLYDKIFSFQVMSIPLIYLIMAASCALFAAMCLETYGLRVREVNATHFDEKMNLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKEVDSLNEQIREMRKR 141
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BLAST of mRNA_P-lacustris_contig1059.534.1 vs. uniprot
Match: W7TBU6_9STRA (Bap31 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBU6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.050e-8
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 1 
Query:    4 ASNNLWPLLIKIIFPVPASFLLLVCLPLSTHGR------IMRWMRKLFDKIFSFRVMGVPLIYLIMVSSCALFAAMCLETYGLRVREVNAVHFDEKMNLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKEMDSLNEQIK 408
            + +N W L +  IFP+P  FL+L+ LP     R      I+  + ++    F +    + LI +I++ +         ++   R  E  A  F EK  LR +RWRAERNF++S +     V+  R++ +L ++  L E++K
Sbjct:   45 SGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLK 185
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BLAST of mRNA_P-lacustris_contig1059.534.1 vs. uniprot
Match: I0Z7B1_COCSC (Bap31 domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z7B1_COCSC)

HSP 1 Score: 51.2 bits (121), Expect = 3.130e-5
Identity = 39/140 (27.86%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:   13 NLWPLLIKIIFPVPASFLLLVCLPLSTHGRIMRWMRKLFDKIFSFRVMG--VPLIYLIMVSSCALFAAMCLETYGLRVREVNAVHFDEKM---NLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKEMDSLNEQIKEMR 417
            +LW ++++I  P+P   L L+C P        R + K+ D      ++G  + L++ ++V S A   A    TY L+ ++++       +   NL G+RWRAERNF+I+F+  +   L  R   +LK    + + +  +R
Sbjct:    2 SLWKMVVEICLPIPIVLLALLCFPAPRVFH--RGVLKVVDSTLGINLVGNVLSLLHFMLVVSGAALLATIRTTYQLKDQKLDPSSVTPNVLSANL-GKRWRAERNFWIAFITFTLWCLLARFYQILKHKAEVEDSLARLR 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1059.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCD9_ECTSI6.420e-8588.65Bap31 domain-containing protein n=2 Tax=Ectocarpus... [more]
W7TBU6_9STRA5.050e-829.08Bap31 domain-containing protein n=2 Tax=Monodopsid... [more]
I0Z7B1_COCSC3.130e-527.86Bap31 domain-containing protein n=2 Tax=Coccomyxa ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1059contigP-lacustris_contig1059:32356..36926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004620.1
Exons4
Model size426
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1059.534.1prot_P-lacustris_contig1059.534.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1059 32356..36926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.021865-CDS-P-lacustris_contig1059:32355..326421622815328.021865-CDS-P-lacustris_contig1059:32355..32642Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 32356..32642 -
1693493479.1708317-CDS-P-lacustris_contig1059:32355..326421693493479.1708317-CDS-P-lacustris_contig1059:32355..32642Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 32356..32642 -
1622815328.0356188-CDS-P-lacustris_contig1059:33688..337261622815328.0356188-CDS-P-lacustris_contig1059:33688..33726Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 33689..33726 -
1693493479.1812952-CDS-P-lacustris_contig1059:33688..337261693493479.1812952-CDS-P-lacustris_contig1059:33688..33726Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 33689..33726 -
1622815328.0500882-CDS-P-lacustris_contig1059:34214..342671622815328.0500882-CDS-P-lacustris_contig1059:34214..34267Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 34215..34267 -
1693493479.1909022-CDS-P-lacustris_contig1059:34214..342671693493479.1909022-CDS-P-lacustris_contig1059:34214..34267Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 34215..34267 -
1622815328.0659003-CDS-P-lacustris_contig1059:36878..369261622815328.0659003-CDS-P-lacustris_contig1059:36878..36926Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 36879..36926 -
1693493479.200959-CDS-P-lacustris_contig1059:36878..369261693493479.200959-CDS-P-lacustris_contig1059:36878..36926Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 36879..36926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1059.534.1

>prot_P-lacustris_contig1059.534.1 ID=prot_P-lacustris_contig1059.534.1|Name=mRNA_P-lacustris_contig1059.534.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=142bp
MASNNLWPLLIKIIFPVPASFLLLVCLPLSTHGRIMRWMRKLFDKIFSFR
VMGVPLIYLIMVSSCALFAAMCLETYGLRVREVNAVHFDEKMNLRGRRWR
AERNFYISFMFLSCSVLANRVRLMLKEMDSLNEQIKEMRRR*
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mRNA from alignment at P-lacustris_contig1059:32356..36926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1059.534.1 ID=mRNA_P-lacustris_contig1059.534.1|Name=mRNA_P-lacustris_contig1059.534.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4571bp|location=Sequence derived from alignment at P-lacustris_contig1059:32356..36926- (Pleurocladia lacustris SAG_25_93)
ATGGCGTCAAACAACCTGTGGCCATTGCTCATCAAAATCATTTTCCCGGT
GAGAGACGCCCACCATGTGGAGAATGGAGAATGCCTGAACGTTCCGAGGG
ATCTACGTTACAGACCAATCTACGATGTGAAAATGTTCCGTATCTTCGAA
GACGGAATCGGATAGTACAACTGGAGTACTCCACATTGACGCTGTGCTAA
CATGATAGTCTGTCTAACGTTGGCGCGTTGGCAGTGCATCCTCCTGACAC
GCGCAGAGTTCGCTCATTTGTTCATTTTATGGCGCGGACGGAACCTATGC
GTCGGCAGTTGTCCCGTACGAGGCTTTGCATGGGACAAAACCCAATAATG
TCACCGCTTCCCGCAATTGTGTCATGAAAATATGTCACGACATTCTCATG
GGAATGCCATGACATCCCATCGGAATGTCATGGGATCCCATGGAATGCCA
TGGGAATGCCATGGGAATGCCATGGGATCCCATGGGACATCACGTGCACC
GCAGTGCGTAATATGACATTCGAACGGTCGCCCTGACTGAGTGGATGGAC
AACAAGCGGTCATGGTCATGGCATGTCACAAGATGACATGTCACGATATC
AGCTGCCCATGGCCTGTGGTCCTAGCCGGCCGAAGTTGTCCGCAGGCAAC
ACCAGCCATGTTGGCATGTATGATGATGACTGTTTGTTCTTTTCACGAAC
ATGATGGTCCACAACGATTTGCAGAGAAGTTGAGTTCAAAGAACGCAACG
TTCCGACTGTACATTAGACCTCTCGCATCGCCATTAAAACATCACCCGCG
CGGACCTATGGGCAAGGGAAGAGACGACGACACGCCTTGCAACGGCATGT
ATCGGCCATTGATCCTCGGAGACATTTGCACAATGCAGTTCATCATGAAT
CTCGGCTTAAGGGGCCCGACCAACTCTTGTCGCTTCTACATTGTAGAGGA
GCCGGTTCTCAGCGAGGACTACGGGCGAGCTGTGAGAGCTATGGTGCATA
CCGTAGCCGTGCACTGGTAGTCGGAAGTGTGGTTCTTCCCGCTCAAACAG
TCTTATGTCCTTGAGTTTTTCGTTATTTTGTCCTTTTGCTCCTTTTTGCT
CAGCACGGGCCGCTGAGAGCACGGATGGTGTCGCCGAAAGAATTCCCCCG
CAGCTCCTTAGCCGATGTAGGGTAGAGCAGAAGAGACGAGGTTAATTCGT
CCCCTAGGCCCAAAGTATGGATGATTGAGATGGCGGCGAAAGTACGCCGG
GGCCACCCAACAAAAAAGCGAAAAAAAACGACCCCCAGGAAAGCCCCCGG
GCTGCCAGAGCCTGCACTCGCGGGTTCGCCGAGGAATGCAGCCATGCTGC
TTCGCGCCAGACCGTATATAGACCGCCGTGAACTAACTGTCTTCTACTCA
CACTGCAGCGGGCAGTGCAAGCTTTCGGACGTGTGAACACCCTGTGGGCG
CCTAGTCAGAGGTGTATCTGAACATAGCCATCCGAACTCGGCGATGCCGA
GAGTTCATTTCCTTGTAGGTGTGCCACCCAATCTTTTGATCAGTGCATCA
CTCCTACACCTGTTCAACCTAGCCTTCGTGCTTCCGCCTTGGATCCAGTA
GTTATGGCTGAGCTTTCCGCCTCTCCGTTTCGCCTCTCGCGAGGGCTCAC
TGAGGCCCAATGTTTTCATAATTTTGTATCTAGGAGGCGTGTCTATTTTT
TTTTAGCTCTGCCCGCGGCGGTTAAAAAACAAGTCCAATAGGTCGTAACA
CTGCAAATTCGGACATATTCCTCACTGCAGCGTACCCATCTCGTTGCTGT
CATTCCCATGACATTGTCATGACATCCCATGGGTTTGTCATGACAATGTG
ACGGGAATATGCCATGGCATAGTTACAGTGCTAATTGCACGTCACATGTC
ATAAGATCCCTTGATCCCTTGACATTCGGTGGGAATATCATGGGATTTCA
TGGGAATGTCATGGGACTTCATGGAAATGCCATGGGATTCTCGTGGGCAT
GTCATGGGATCCCATGGCAATGTCATGGGAGCCCATGGGAATGTCATGGG
AGCCCATGAGAATGTATTCTGAGATGTGTAATGGAAATTGGGGAGCCCAT
GGGAAATCATGAGATGGCCATGGGATCCCATGGGATTGTCATAAAATCTC
GACATGATAGTATTGCCCGTGTCATGTGAAGAGATCTCATGGGATCCCAT
GGGATCCCGTGACAATATATCATAAGACAGTTTGTCATGGGATCCCATGA
ATTCCCATGGGATCCCATGACATATCAAGTGCAAAGTGCCGTGGGAATAT
CCCATTGATTGTGATAACATTCCCATGATATTCCCATGGGATCCCAGGGA
CAAAACCCAATAATGTCACTGCTTGGCCCGTATATGATGCGCCGATGTAT
GGGTCTGTAGTACTGTACCTATCTCGAATTCTCGAAATAGAAGGAGAATC
TTGTGCAATCCCACCTTACCTAGAGGCAGAGAGACCGGACTAAAAGCGCC
TTCATACTGTTGACAGACACTGCATCCCGTCACAAGTATTATATGCGGTT
TCTTTGCTTCTGCCGTGTCTTGGCTGACGATGCCCTCCTGCTGCTGCTGC
TTCGGCGGCGGCTGTTGATGCCTCCTGTTGTGTCGACTTGACGCCTGGGA
AAATTACAGGTACCAGCGAGCTTCTTGCTCTTAGTTTGTCTGCCTCTGTC
AACCCATGGCAGGTGAGAGAGAGAGACAAACCAGCAGCTTGACTTGACTA
CAATGTGACTAGATTACTCTAGTTTTCTCCACACATTGTACGTTAACGCC
GGGTGTGTCTTCCTGCGAGCAGCCTCCCGTGGTCGGTGGCAGGCGAATAC
AGGGAGCGCGCTTTGTGTCTGAAATGTTCGCGCCTTTCTTGCATACAGCA
GCCAGCAGTTTATGTGTAGTTTTCTGTCCGTGCAGCAGTCTCTGGAAGAT
TGCATGTCCAAAAAAAGGTAGCAATTGTTGGTGCTCACGGGCTTGGAGTG
GTCTTCCCGCGTGTCGTACCTTCCTCGTTTTTGCGGACACAGCAATCGCG
CGTGCTCGCGTACATCGCTGCCAGCAATATTTTTGCCTTTTGTTTTCTCC
TATTCCTCAACTTTTTTTTTTGTTTCTTGTTCAAACCGACTGATGTGGGG
CGGTCCGGGACACCACGCGCCTTCTGCTAATTCGACCTTCCACGCCCAAG
GATTATGCGATGGATGCGAAAGCTCTTCGACAAGATCTGTGAGTTCGCCC
GCCTTCTGGCAGTATAACCACTTGCCACGATCCAGATTAGTCGCTAGCGT
CGACCGCGCCAACGGATTGGCAAATGATGAGACTTGAGCTCGTATAGGGA
CGTCGCCGACACGTGACCCATTGGAGTGGCTCTGTCCGGGGGAACATTAA
GTCGCGTCGGTTTTCATTTGCTGGTGTGGCAGCTTGACTTGAAACGCGCG
TCATGCAGTGTGGAAGGAAGCGGATAGTCAGTGAGAATGGTCGATATCGA
TACCTTTTGCGTTATAAAGTACAATCTTGTCGGGTTGGATGCAGACGTGG
CACAAGTTCACTATGGGTGTCACGTTCAAAACTTATCTTTCCTCGGAAAC
GAGCAGTAGGTGCGGTATGGAAGTGAAGAACCTCTTGAAAAGCTTTTCTG
TACGTCCTGCTGTTTGGCGCGGGTAGTCAGTTCTCTCCAAGATATATTTG
CTGTATTCGCTATTTTTCTCGAATATAGCCTCGTTTACACGTATAGCCCA
GCCTATGCATGACTTCCGTACATTACGGCGGAGCCCCCCCCTGACTCGGA
CTGTCCTCTCGGTTTTACAAAAAAAAAAAAGAGAAACGTTCGGCGGGCGA
TGTTCGTTTTATCTTCGGAATAGAATGGTGTATCGTTTCAGCACCACGGG
GCGCGACCCCGGTCCAAACCTGTCTTCCTTCTACCCGCGCGCTCATGGTT
TGACTCACTCGTGGAGTGCTGGCAGTCTCCGAGTCTCTCGCCTATGGGTG
TCTCTGTCTGAGTGTGCATGTGTTCTTGTATTCACGTGAGAAACCGTCCG
TAACATCCAGTACTTCCACTCCTGTACGGTACTGATTCAAGGCAATCAAG
CGAGTTTCCGGTAATGGTAACAAACTATGTGTCTCAACGTAAGTCAAAAA
GGCACCCAAAAGAAACCCAGAGAGCGCCCCACCACCTTATGCCGCGAAAA
CCTTAAGCGTGATGACCAATGAACTGGTTCCGTGCTCTGCCCCCCTCTGG
TTCGTGTGCTGCGTCTCCTCGCCTGTGCCGCTAGTCTCCTTCCGGGTGAT
GGGCGTCCCGCTCATCTACCTCATCATGGTGTCCTCCTGCGCCCTGTTCG
CCGCCATGTGCCTCGAGACCTACGGCCTCCGCGTGCGGGAGGTAAACGCG
GTGCACTTCGACGAGAAGATGAACCTCAGGGGCCGCCGCTGGAGGGCCGA
GCGCAACTTCTACATCTCCTTCATGTTCCTGTCCTGCTCCGTGCTGGCGA
ACCGGGTGCGGCTGATGCTCAAGGAGATGGACTCCCTCAACGAGCAGATC
AAAGAGATGCGCAGGAGATGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1059:32356..36926-

>mRNA_P-lacustris_contig1059.534.1 ID=mRNA_P-lacustris_contig1059.534.1|Name=mRNA_P-lacustris_contig1059.534.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=852bp|location=Sequence derived from alignment at P-lacustris_contig1059:32356..36926- (Pleurocladia lacustris SAG_25_93)
ATGGCGTCAAACAACCTGTGGCCATTGCTCATCAAAATCATTTTCCCGAT
GGCGTCAAACAACCTGTGGCCATTGCTCATCAAAATCATTTTCCCGGTAC
CAGCGAGCTTCTTGCTCTTAGTTTGTCTGCCTCTGTCAACCCATGGCAGG
TACCAGCGAGCTTCTTGCTCTTAGTTTGTCTGCCTCTGTCAACCCATGGC
AGGATTATGCGATGGATGCGAAAGCTCTTCGACAAGATCTGATTATGCGA
TGGATGCGAAAGCTCTTCGACAAGATCTTCTCCTTCCGGGTGATGGGCGT
CCCGCTCATCTACCTCATCATGGTGTCCTCCTGCGCCCTGTTCGCCGCCA
TGTGCCTCGAGACCTACGGCCTCCGCGTGCGGGAGGTAAACGCGGTGCAC
TTCGACGAGAAGATGAACCTCAGGGGCCGCCGCTGGAGGGCCGAGCGCAA
CTTCTACATCTCCTTCATGTTCCTGTCCTGCTCCGTGCTGGCGAACCGGG
TGCGGCTGATGCTCAAGGAGATGGACTCCCTCAACGAGCAGATCAAAGAG
ATGCGCAGGAGATGATCTCCTTCCGGGTGATGGGCGTCCCGCTCATCTAC
CTCATCATGGTGTCCTCCTGCGCCCTGTTCGCCGCCATGTGCCTCGAGAC
CTACGGCCTCCGCGTGCGGGAGGTAAACGCGGTGCACTTCGACGAGAAGA
TGAACCTCAGGGGCCGCCGCTGGAGGGCCGAGCGCAACTTCTACATCTCC
TTCATGTTCCTGTCCTGCTCCGTGCTGGCGAACCGGGTGCGGCTGATGCT
CAAGGAGATGGACTCCCTCAACGAGCAGATCAAAGAGATGCGCAGGAGAT
GA
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