prot_P-lacustris_contig1003.140.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig1003.140.1
Unique Name	prot_P-lacustris_contig1003.140.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	363

Homology

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BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 5.500e-142
Identity = 200/234 (85.47%), Postives = 215/234 (91.88%), Query Frame = 0

Query:   64 AQGVPEDPNEMRQRLEREYYERAKMRNKRKRQEDLDRFTKLRHQLRDLPKQRQCHRYRWVQTETTFDVEIPMLKACKDEDLFLVVEKGQMQVAIKTDEAFGGITGVFPGDVDPTKCSFRIHSRFNEPYIHLEIVKLTQPGIYEFWHELLQGEVESPTIRFKGKTDRYSWKQNTETIELEIPVPDDVTKRKTVLELDPAGDRMHLSFTNRPDFKPLEGKFKDLISPLDSVWMLGE 297
            AQ +PEDPNE+ QRLEREYYERAK RN RKRQED+DR T+LRH LRDLP QRQCHRYRW QTETTFDVEIPMLKAC+DEDL+LVVEK QMQVAIKTDE+FG ITGVFPGDVD   CSFRIHSRFNEPYIHLEIVKLT PG+YEFWHELLQGE ESPTIRFKG+T RYSWKQN ETIEL+IPVPDDVTKRKT L+LDPAGDR+H+SF+NRPDF+PLEGKFK LISPLDSVWMLGE
Sbjct:    5 AQRIPEDPNEL-QRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237

[Close]

BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.870e-36
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 0

Query:  110 DLPKQRQCHRYRWVQTETTFDVEIPMLKACKDEDLFLVVEKGQMQVAIKTDEAFGGITGVFPGDVDPTKCSFRIHSRFN-EPYIHLEIVKLTQPGIYEFWHELLQGEVESPTIRFKGKTDRYSWKQNTETIELEIPVPDDVTKRKTVLELDPAGD--------------RMHLSFTNRPDFKPLEGKFKDLISPLDSVWMLGEPG 299
            ++P QR+CH+YRW QT     VE+P+ +ACK EDL  V+ +G MQ++I++D  F  + G FPG VD    ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T ++    G               R+ LS    P+    E +F+  I   D  WML E G
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDG 247

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LL06_ECTSI	5.500e-142	85.47	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CLX2_9STRA	1.870e-36	36.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 109..218 e-value: 6.5E-9 score: 37.8 coord: 219..319 e-value: 2.2E-9 score: 39.2
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 116..223
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 219..297
IPR007052	CS domain	PFAM	PF04969	CS	coord: 119..185 e-value: 0.0043 score: 18.0 coord: 229..295 e-value: 5.7E-5 score: 24.1
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 225..328 score: 9.503
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 115..212 score: 8.639
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 224..295
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 107..218
None	No IPR available	PANTHER	PTHR12356:SF3	NUCLEAR MIGRATION PROTEIN NUDC	coord: 107..218
None	No IPR available	PANTHER	PTHR12356:SF3	NUCLEAR MIGRATION PROTEIN NUDC	coord: 224..295
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..362
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig1003	contig	P-lacustris_contig1003:27331..33367 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1003.140.1	mRNA_P-lacustris_contig1003.140.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig1003 27290..33424 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig1003.140.1 ID=prot_P-lacustris_contig1003.140.1|Name=mRNA_P-lacustris_contig1003.140.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=363bp
MAVAMIVATLLAGAKPSVGFGFGAPAALARPSDRSSHQIISQSRRRASQG
AAEGEIGDSWLPTAQGVPEDPNEMRQRLEREYYERAKMRNKRKRQEDLDR
FTKLRHQLRDLPKQRQCHRYRWVQTETTFDVEIPMLKACKDEDLFLVVEK
GQMQVAIKTDEAFGGITGVFPGDVDPTKCSFRIHSRFNEPYIHLEIVKLT
QPGIYEFWHELLQGEVESPTIRFKGKTDRYSWKQNTETIELEIPVPDDVT
KRKTVLELDPAGDRMHLSFTNRPDFKPLEGKFKDLISPLDSVWMLGEPGP
CEVEFRAETNDHPFRDCVRPLRLWSRETSICASVCAEQGPFLELELSQDV
LVRSRSSPSGFE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR007052	CS_dom
IPR037898	NudC_fam