mRNA_P-lacustris_contig1003.140.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 1.790e-141 Identity = 200/234 (85.47%), Postives = 215/234 (91.88%), Query Frame = 3 Query: 231 AQGVPEDPNEMRQRLEREYYERAKMRNKRKRQEDLDRFTKLRHQLRDLPKQRQCHRYRWVQTETTFDVEIPMLKACKDEDLFLVVEKGQMQVAIKTDEAFGGITGVFPGDVDPTKCSFRIHSRFNEPYIHLEIVKLTQPGIYEFWHELLQGEVESPTIRFKGKTDRYSWKQNTETIELEIPVPDDVTKRKTVLELDPAGDRMHLSFTNRPDFKPLEGKFKDLISPLDSVWMLGE 932
AQ +PEDPNE+ QRLEREYYERAK RN RKRQED+DR T+LRH LRDLP QRQCHRYRW QTETTFDVEIPMLKAC+DEDL+LVVEK QMQVAIKTDE+FG ITGVFPGDVD CSFRIHSRFNEPYIHLEIVKLT PG+YEFWHELLQGE ESPTIRFKG+T RYSWKQN ETIEL+IPVPDDVTKRKT L+LDPAGDR+H+SF+NRPDF+PLEGKFK LISPLDSVWMLGE
Sbjct: 5 AQRIPEDPNEL-QRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA) HSP 1 Score: 142 bits (359), Expect = 3.820e-36 Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 3 Query: 369 DLPKQRQCHRYRWVQTETTFDVEIPMLKACKDEDLFLVVEKGQMQVAIKTDEAFGGITGVFPGDVDPTKCSFRIHSRFN-EPYIHLEIVKLTQPGIYEFWHELLQGEVESPTIRFKGKTDRYSWKQNTETIELEIPVPDDVTKRKTVLELDPAGD--------------RMHLSFTNRPDFKPLEGKFKDLISPLDSVWMLGEPG 938
++P QR+CH+YRW QT VE+P+ +ACK EDL V+ +G MQ++I++D F + G FPG VD ++ +HS + + Y+ L + KL PG E W+ LL+GE +PT+RF+G T Y+W Q I++ VP T T ++ G R+ LS P+ E +F+ I D WML E G
Sbjct: 43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDG 247 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1003.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1003.140.1 >prot_P-lacustris_contig1003.140.1 ID=prot_P-lacustris_contig1003.140.1|Name=mRNA_P-lacustris_contig1003.140.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=363bp MAVAMIVATLLAGAKPSVGFGFGAPAALARPSDRSSHQIISQSRRRASQGback to top mRNA from alignment at P-lacustris_contig1003:27290..33424+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1003.140.1 ID=mRNA_P-lacustris_contig1003.140.1|Name=mRNA_P-lacustris_contig1003.140.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6135bp|location=Sequence derived from alignment at P-lacustris_contig1003:27290..33424+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1003:27290..33424+ >mRNA_P-lacustris_contig1003.140.1 ID=mRNA_P-lacustris_contig1003.140.1|Name=mRNA_P-lacustris_contig1003.140.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2178bp|location=Sequence derived from alignment at P-lacustris_contig1003:27290..33424+ (Pleurocladia lacustris SAG_25_93)back to top |