prot_P-lacustris_contig100.103.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig100.103.1
Unique Nameprot_P-lacustris_contig100.103.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length609
Homology
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 478 bits (1230), Expect = 2.440e-160
Identity = 296/483 (61.28%), Postives = 335/483 (69.36%), Query Frame = 0
Query:    1 RATTASPSQLSCTDSEYAEVAYGA--SSKLEERVFGADDAVPEACMADDSDNTHDNVGLELLDISEFLEPDAVFRAAEERKQEGLVEELAELDYDEVRSDFDEYGNVGSAAXXXXXXENIYHSDGGEHVKT-VARKSGPGAKGKGGGGRR-QGVGGLEGLTADQVERKLISAGILREDGAEIDLEEYEGTDGCGAAGLLNEIEVSDGEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASG-SKTGNKFLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGVDVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKK-----------VSYYREALAWTNEEVAAMLAVYPNFLSIKMEDDVIEIIDYLRTDIGLQPYMVSDMIREFPQVLEVRPKRLKAVVRYLWKVLEIPRSGIAVILRQHPRACFLEAEANLAPLRNFFERELFME 467
            R T  SPS+LS   SE A++  G   + K EE+   A   VP   +  DS    D    E L+IS+FL+ D  F       QE                            XXXXXX N + +D    V+  V R+SGPG   KG       GVG LEGL+AD+VE++LI+AGILR DGAEID EE +G    G AG+ NEIEVSDGEEAC+IL ERLGFDEE IA L+SKYPPLRGELWYRREPASG SKTG KFLD + +EETLPDLL+LLLGEEG + GG G  R + R  MLT TPSL+G+DVSDA +V  YLRSELGL GK QLASAL GCPPMLMYH WDNLR K           VSYYRE+LAWTNE+VAAMLA YPN LSIKME+DVIE+IDYLRT++GLQP  VS M+REFPQVLEVRPKRLKAVVRY WKVLEIPRSGIAV+L QHPR C LEAEANLAPLR FFERELF+E
Sbjct:   29 RGTATSPSRLSAA-SEDADITTGGRFTVKEEEKGLRAHRDVPGGSIEGDSAQDADTP--EPLEISDFLQADVAF------DQEXXX-----------------------XXXXXXXXXNWHTADASGFVEDEVVRESGPGGAAKGXXXXXXDGVGSLEGLSADEVEQRLIAAGILRGDGAEIDFEEDDG----GGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEG-EGGGVGLDRKQVRE-MLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVE 473          
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 2.930e-123
Identity = 279/573 (48.69%), Postives = 317/573 (55.32%), Query Frame = 0
Query:    1 RATTASPSQLSCTDSEYAEVAYGASSKLEERVFGADDAVPEACMADDSDNTHDNVGLELLDISEFLEPDAVFRAAEERKQEGLVEELAELDY-----DEVRSDFDEYGNVGSAAXXXXXXENIYHS----------------DGGEH-VKTVARKSGPGAKGKGGGGRRQG-VGGLEGLTADQVERKLISAGILREDGAEIDLEEYEGTDGCGAAGLLNEIEVSDGEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASG-SKTGNKFLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGVDVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKKVSYYREALAWTNEEVAAMLAVYPNFLSIKMEDDVIEIIDYLRTDIGLQPYMVSDMIREFPQVLEVRPKRLKAVVRY------------------LWKVLEIPRSGIAVILRQHPRACFLEAEANLAPLRNFFERELFMEDTARIGHXXXXXXXXXXXXXXXXXXXRAEEFRKAMGLDGVEPLPPRVRERPKRSKFRADDDARG 531
            R T  S S+LS   SE A+V+ G     E     AD   P   +  + D+  D V  ELLD S+FL+PD  F   E+             D      DE  SD   YG+   AAXXXXXX                      DGG+  V+ VARKSGPG   K          G LEGL+AD+VER+LI+AGILR DGAEID +E    D  G AG+ NEIEVSDGEEACRIL ERLGFDEE I  L+SKYPPLRGELWYRREPASG SKTG KFLD + +EETLPDLL+LLLGEEG + GG G  R ++R             D S + +                                W ++   VSYYREALAWT+E+VAAMLA YPN LSIKME+DVIE+ID                        EVRPKRLKAVVR                   L  VLEIPRSGIAV+L QHPRAC LEAEANLAPLR FFERELF+EDT+RIGH                   RAEEFRKAMGL+G+EPLPPRVR RPKRSKF     ARG
Sbjct:   60 RGTATSASRLSAA-SEDADVSTGGLFTQEAEGLRADKGTPVGSI--EGDSAEDAVTPELLDSSDFLQPDVAF---EQEXXXXXXXNWHTPDANGFFDDEGNSDVQGYGSANPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDRPVEKVARKSGPGGAAKXXXXXXXXXAGSLEGLSADEVERRLIAAGILRGDGAEIDFDE----DDDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEG-EGGGIGLDRKQARG----------PADSSHSEQF-------------------------------WGDVDADVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVIDXXXXXXXXXXXXXXXXXXXXXXXXEVRPKRLKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPKRSKFSGAGRARG 580          
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.140e-32
Identity = 110/364 (30.22%), Postives = 163/364 (44.78%), Query Frame = 0
Query:  203 GEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASGSKTGNKFLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGVDVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKKVSYYREALAWTNEEVAAMLAVYPNFLSIKMEDD---VIEIIDYLRTDIGLQPYMVSDMIREFPQ-VLEVRPKRLKAVVRYLWK------------------------------------VLEIPRSGIAVILRQHPRACFLEAEANLAPLRNFFERELFMEDTARIGHXXXXXXXXXXXXXXXXXXXRAEEFRKAMGLDGVEPLPPRVRE-RPKRSKFRA 525
            G EA R L+E +G    ++A L  ++ PLRGE+WYRR      + G K LD + LE+TLPDL+ LL   E       GW +    A      PSLLG + ++    + Y+R      G  +L  AL  CP +L+Y A  NLR K +Y    L  T  ++  ++  YP    +    +    I  +D L  D G+  +M   ++   P+ V E + KR+KA++ YL K                                    VL++       ++  HPR   +EAE +LAPLR+FFE +L + DT RIG                    +A + R  +G+   +  PPR R  RP R++ RA
Sbjct:   62 GAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR------RNGKKVLDVYFLEDTLPDLVELLEAPEE-----LGWSQEEMAAAFAV-VPSLLGREAAEVAASLRYVREXXXXEGG-ELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGEGKSSIASLDVL-LDSGMTTHMACQLVVAEPELVAEAKGKRVKALMHYLQKWRRLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGIPD-DAAPPRPRAPRPTRAEQRA 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVI5_ECTSI2.440e-16061.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV1_9PHAE2.930e-12348.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN67_9STRA4.140e-3230.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 288..319
e-value: 22.0
score: 14.0
coord: 473..505
e-value: 0.13
score: 21.4
coord: 362..394
e-value: 0.84
score: 18.7
coord: 325..357
e-value: 740.0
score: 4.9
coord: 399..430
e-value: 2.8
score: 16.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 284..497
e-value: 6.5E-14
score: 51.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 369..508
e-value: 4.3E-13
score: 51.0
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 320..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig100contigP-lacustris_contig100:82931..92301 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig100.103.1mRNA_P-lacustris_contig100.103.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig100 82931..92301 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig100.103.1 ID=prot_P-lacustris_contig100.103.1|Name=mRNA_P-lacustris_contig100.103.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=609bp
RATTASPSQLSCTDSEYAEVAYGASSKLEERVFGADDAVPEACMADDSDN
THDNVGLELLDISEFLEPDAVFRAAEERKQEGLVEELAELDYDEVRSDFD
EYGNVGSAAAADDDDENIYHSDGGEHVKTVARKSGPGAKGKGGGGRRQGV
GGLEGLTADQVERKLISAGILREDGAEIDLEEYEGTDGCGAAGLLNEIEV
SDGEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASGSKTGNK
FLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGV
DVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKKVSYY
REALAWTNEEVAAMLAVYPNFLSIKMEDDVIEIIDYLRTDIGLQPYMVSD
MIREFPQVLEVRPKRLKAVVRYLWKVLEIPRSGIAVILRQHPRACFLEAE
ANLAPLRNFFERELFMEDTARIGHLVYKFPRLLFQDVQTQLAPRAEEFRK
AMGLDGVEPLPPRVRERPKRSKFRADDDARGRGHGGRRGGDGRGRGGGGG
GGIGAAPVGQEVSTMASRGGATGAERGEANSGGAGGGQAIFGELVVEAGV
STGEEEGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf