mRNA_P-lacustris_contig100.103.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI) HSP 1 Score: 478 bits (1230), Expect = 2.440e-160 Identity = 296/483 (61.28%), Postives = 335/483 (69.36%), Query Frame = 1 Query: 1 RATTASPSQLSCTDSEYAEVAYGA--SSKLEERVFGADDAVPEACMADDSDNTHDNVGLELLDISEFLEPDAVFRAAEERKQEGLVEELAELDYDEVRSDFDEYGNVGSAAXXXXXXENIYHSDGGEHVKT-VARKSGPGAKGKGGGGRR-QGVGGLEGLTADQVERKLISAGILREDGAEIDLEEYEGTDGCGAAGLLNEIEVSDGEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASG-SKTGNKFLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGVDVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKK-----------VSYYREALAWTNEEVAAMLAVYPNFLSIKMEDDVIEIIDYLRTDIGLQPYMVSDMIREFPQVLEVRPKRLKAVVRYLWKVLEIPRSGIAVILRQHPRACFLEAEANLAPLRNFFERELFME 1401
R T SPS+LS SE A++ G + K EE+ A VP + DS D E L+IS+FL+ D F QE XXXXXX N + +D V+ V R+SGPG KG GVG LEGL+AD+VE++LI+AGILR DGAEID EE +G G AG+ NEIEVSDGEEAC+IL ERLGFDEE IA L+SKYPPLRGELWYRREPASG SKTG KFLD + +EETLPDLL+LLLGEEG + GG G R + R MLT TPSL+G+DVSDA +V YLRSELGL GK QLASAL GCPPMLMYH WDNLR K VSYYRE+LAWTNE+VAAMLA YPN LSIKME+DVIE+IDYLRT++GLQP VS M+REFPQVLEVRPKRLKAVVRY WKVLEIPRSGIAV+L QHPR C LEAEANLAPLR FFERELF+E
Sbjct: 29 RGTATSPSRLSAA-SEDADITTGGRFTVKEEEKGLRAHRDVPGGSIEGDSAQDADTP--EPLEISDFLQADVAF------DQEXXX-----------------------XXXXXXXXXNWHTADASGFVEDEVVRESGPGGAAKGXXXXXXDGVGSLEGLSADEVEQRLIAAGILRGDGAEIDFEEDDG----GGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEG-EGGGVGLDRKQVRE-MLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVE 473
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE) HSP 1 Score: 387 bits (993), Expect = 2.930e-123 Identity = 279/573 (48.69%), Postives = 317/573 (55.32%), Query Frame = 1 Query: 1 RATTASPSQLSCTDSEYAEVAYGASSKLEERVFGADDAVPEACMADDSDNTHDNVGLELLDISEFLEPDAVFRAAEERKQEGLVEELAELDY-----DEVRSDFDEYGNVGSAAXXXXXXENIYHS----------------DGGEH-VKTVARKSGPGAKGKGGGGRRQG-VGGLEGLTADQVERKLISAGILREDGAEIDLEEYEGTDGCGAAGLLNEIEVSDGEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASG-SKTGNKFLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGVDVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKKVSYYREALAWTNEEVAAMLAVYPNFLSIKMEDDVIEIIDYLRTDIGLQPYMVSDMIREFPQVLEVRPKRLKAVVRY------------------LWKVLEIPRSGIAVILRQHPRACFLEAEANLAPLRNFFERELFMEDTARIGHXXXXXXXXXXXXXXXXXXXRAEEFRKAMGLDGVEPLPPRVRERPKRSKFRADDDARG 1593
R T S S+LS SE A+V+ G E AD P + + D+ D V ELLD S+FL+PD F E+ D DE SD YG+ AAXXXXXX DGG+ V+ VARKSGPG K G LEGL+AD+VER+LI+AGILR DGAEID +E D G AG+ NEIEVSDGEEACRIL ERLGFDEE I L+SKYPPLRGELWYRREPASG SKTG KFLD + +EETLPDLL+LLLGEEG + GG G R ++R D S + + W ++ VSYYREALAWT+E+VAAMLA YPN LSIKME+DVIE+ID EVRPKRLKAVVR L VLEIPRSGIAV+L QHPRAC LEAEANLAPLR FFERELF+EDT+RIGH RAEEFRKAMGL+G+EPLPPRVR RPKRSKF ARG
Sbjct: 60 RGTATSASRLSAA-SEDADVSTGGLFTQEAEGLRADKGTPVGSI--EGDSAEDAVTPELLDSSDFLQPDVAF---EQEXXXXXXXNWHTPDANGFFDDEGNSDVQGYGSANPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDRPVEKVARKSGPGGAAKXXXXXXXXXAGSLEGLSADEVERRLIAAGILRGDGAEIDFDE----DDDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEG-EGGGIGLDRKQARG----------PADSSHSEQF-------------------------------WGDVDADVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVIDXXXXXXXXXXXXXXXXXXXXXXXXEVRPKRLKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPKRSKFSGAGRARG 580
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA) HSP 1 Score: 139 bits (351), Expect = 4.140e-32 Identity = 110/364 (30.22%), Postives = 163/364 (44.78%), Query Frame = 1 Query: 607 GEEACRILVERLGFDEESIACLKSKYPPLRGELWYRREPASGSKTGNKFLDAFLLEETLPDLLNLLLGEEGGDAGGEGWRRSRSRAGMLTNTPSLLGVDVSDANEVVTYLRSELGLRGKYQLASALVGCPPMLMYHAWDNLRKKVSYYREALAWTNEEVAAMLAVYPNFLSIKMEDD---VIEIIDYLRTDIGLQPYMVSDMIREFPQ-VLEVRPKRLKAVVRYLWK------------------------------------VLEIPRSGIAVILRQHPRACFLEAEANLAPLRNFFERELFMEDTARIGHXXXXXXXXXXXXXXXXXXXRAEEFRKAMGLDGVEPLPPRVRE-RPKRSKFRA 1575
G EA R L+E +G ++A L ++ PLRGE+WYRR + G K LD + LE+TLPDL+ LL E GW + A PSLLG + ++ + Y+R G +L AL CP +L+Y A NLR K +Y L T ++ ++ YP + + I +D L D G+ +M ++ P+ V E + KR+KA++ YL K VL++ ++ HPR +EAE +LAPLR+FFE +L + DT RIG +A + R +G+ + PPR R RP R++ RA
Sbjct: 62 GAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR------RNGKKVLDVYFLEDTLPDLVELLEAPEE-----LGWSQEEMAAAFAV-VPSLLGREAAEVAASLRYVREXXXXEGG-ELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGEGKSSIASLDVL-LDSGMTTHMACQLVVAEPELVAEAKGKRVKALMHYLQKWRRLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGIPD-DAAPPRPRAPRPTRAEQRA 410 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.103.1 >prot_P-lacustris_contig100.103.1 ID=prot_P-lacustris_contig100.103.1|Name=mRNA_P-lacustris_contig100.103.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=609bp RATTASPSQLSCTDSEYAEVAYGASSKLEERVFGADDAVPEACMADDSDNback to top mRNA from alignment at P-lacustris_contig100:82931..92301- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.103.1 ID=mRNA_P-lacustris_contig100.103.1|Name=mRNA_P-lacustris_contig100.103.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9371bp|location=Sequence derived from alignment at P-lacustris_contig100:82931..92301- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:82931..92301- >mRNA_P-lacustris_contig100.103.1 ID=mRNA_P-lacustris_contig100.103.1|Name=mRNA_P-lacustris_contig100.103.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3654bp|location=Sequence derived from alignment at P-lacustris_contig100:82931..92301- (Pleurocladia lacustris SAG_25_93)back to top |