mRNA_P-lacustris_contig975.16069.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig975.16069.1
Unique NamemRNA_P-lacustris_contig975.16069.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: D7FJG4_ECTSI (Prefoldin subunit, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG4_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.850e-63
Identity = 113/147 (76.87%), Postives = 118/147 (80.27%), Query Frame = 1
Query:    1 MEESKVPRGALGEGGGQEMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKYXXXXXXXXXXXXXXXXRGDPQQQALQA 441
            MEESK P GA G  GGQE+NEQQIIG YR ML D NQMRRKISELEQEV+EHQMVVDTLEPLE TRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQ+LQQLAT+RANKEKEAAEWKIKY                +G P  QALQA
Sbjct:    1 MEESKAPGGAEGGVGGQELNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQA--QGIPTPQALQA 145          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A835YP58_9STRA (Putative prefoldin subunit (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP58_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.800e-29
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   55 MNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLE--ATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            + EQQ+I  Y+ +L D + +RRKI+ELEQE  EH++V++TLE +E    RRA+RLVGGVLVERTV +VLP+V+AN  GIKQVL  LAT    KE+ AA WKIKY
Sbjct:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKY 104          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: K3WSV0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSV0_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 2.120e-27
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   55 MNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            + EQQ+I  Y+AM  +  Q+  KI+ELE E  EH+ V+ TL+ L ATR+AYR+VGGVLVERTV EVLP V +N++GI QVL QL  S   KE+ A EW+ KY
Sbjct:    5 ITEQQVIATYKAMRAEVRQLAEKIAELEVETTEHERVIQTLKDLPATRKAYRMVGGVLVERTVAEVLPAVTSNRDGIAQVLTQLNESIKQKEESANEWQRKY 106          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A5D6XZ09_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ09_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.090e-27
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   46 GQEMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            G+ + EQQ++  Y+A+ ++  Q+  KI+ELE E+ EH+ V+ TL+ L   R+AYR+VGGVLVERTV EVLP V AN++GI QVL QL  S   KEK A +W+ KY
Sbjct:    3 GEAITEQQVVATYKALRSEVRQLAEKIAELEVEIAEHERVLQTLQGLPGARKAYRMVGGVLVERTVAEVLPAVSANRDGIAQVLAQLGESLKQKEKSADDWQRKY 107          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A7S0CI05_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI05_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.570e-27
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 1
Query:   49 QEMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            Q ++E+ ++  Y+ + +  NQ+  KI+ELE + NEH++V DTL+PLE TRRAYRLVGGVLVERTVGE+LP V  N+E I+ VL  L  +   K+KE ++WK KY
Sbjct:   35 QPIDEKTVLAKYKELQSSCNQLINKITELEFDRNEHRLVEDTLKPLETTRRAYRLVGGVLVERTVGEILPAVTTNKENIQMVLDNLQKNMEAKQKETSDWKAKY 138          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A3M6VHU8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHU8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.860e-27
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   46 GQEMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            G+ + EQQ++  Y+++  +  QM  KI+ELE E  EH  V+ TL  L   R+AYR++GGVLVERTV EVLP VKAN++GI QVL+QL  S  +KEK A EW+ KY
Sbjct:    2 GEHITEQQVVATYKSLRAEVRQMGEKIAELEMETTEHDRVIQTLTELPNGRKAYRMIGGVLVERTVQEVLPAVKANRDGIAQVLKQLNESIKHKEKTADEWQQKY 106          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: UPI001C4B84E9 (probable prefoldin subunit 2 n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4B84E9)

HSP 1 Score: 105 bits (263), Expect = 2.240e-26
Identity = 52/103 (50.49%), Postives = 78/103 (75.73%), Query Frame = 1
Query:   52 EMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            +MNEQ I+  Y  M T+ NQ+  KI+ELE EV+EH +V+  ++PL+ +RR YR+VGGVLVERT+ EVLP V+ N+EG+++V+ +L  +   K+KE AE+++KY
Sbjct:   13 QMNEQLILNTYANMRTEVNQIYSKITELEMEVSEHSLVIGAIQPLDPSRRCYRMVGGVLVERTINEVLPAVQRNKEGLEEVIARLNEALEKKKKEIAEFELKY 115          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A8K1CT28_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT28_PYTOL)

HSP 1 Score: 104 bits (259), Expect = 3.970e-26
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   49 QEMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            Q++++QQII  Y++M  +  QM  KI+ELE E  EH  V+ TL+ L  TR+A+R+VGGVLVERTV EVLP V  N++G+KQVL+QL  S   KE  A EW+ KY
Sbjct:    8 QQLSDQQIIAMYKSMRAEIRQMAEKIAELEVETTEHDRVIATLQGLPPTRKAFRMVGGVLVERTVQEVLPAVVTNRDGVKQVLEQLNESIKQKEASANEWQRKY 111          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A8J5EWR1_ZINOF (Uncharacterized protein n=6 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EWR1_ZINOF)

HSP 1 Score: 105 bits (263), Expect = 6.190e-26
Identity = 52/103 (50.49%), Postives = 78/103 (75.73%), Query Frame = 1
Query:   52 EMNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            +MNEQ I+  Y  M T+ NQ+  KI+ELE EV+EH +V+  ++PL+ +RR YR+VGGVLVERT+ EVLP V+ N+EG+++V+ +L  +   K+KE AE+++KY
Sbjct:   32 QMNEQLILNTYANMRTEVNQIYSKITELEMEVSEHSLVIGAIQPLDPSRRCYRMVGGVLVERTINEVLPAVQRNKEGLEEVIARLNEALEKKKKEIAEFELKY 134          
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Match: A0A388LWS9_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LWS9_CHABU)

HSP 1 Score: 103 bits (258), Expect = 1.170e-25
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   55 MNEQQIIGAYRAMLTDANQMRRKISELEQEVNEHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQQLATSRANKEKEAAEWKIKY 360
            +NEQ +I  + A+  + NQ+ +KI+ELE E+NEH +V+  +EP+E +RR YRL+GGVLVERTV EVLP V  N EG+K+V+ +L      K KE AE+++KY
Sbjct:    9 VNEQAVISRFGALRNEVNQLWQKITELEMEMNEHNLVIGAIEPMEPSRRCYRLIGGVLVERTVAEVLPAVTRNCEGLKEVIGKLGEQLQKKRKELAEFQMKY 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig975.16069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG4_ECTSI2.850e-6376.87Prefoldin subunit, putative n=2 Tax=Ectocarpus Tax... [more]
A0A835YP58_9STRA2.800e-2959.62Putative prefoldin subunit (Fragment) n=1 Tax=Trib... [more]
K3WSV0_GLOUD2.120e-2755.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XZ09_9STRA3.090e-2752.38Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0CI05_9STRA3.570e-2752.88Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A3M6VHU8_9STRA5.860e-2753.33Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
UPI001C4B84E92.240e-2650.49probable prefoldin subunit 2 n=1 Tax=Zingiber offi... [more]
A0A8K1CT28_PYTOL3.970e-2653.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J5EWR1_ZINOF6.190e-2650.49Uncharacterized protein n=6 Tax=Zingiber officinal... [more]
A0A388LWS9_CHABU1.170e-2550.98Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig975contigP-lacustris_contig975:61201..62850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue5.7e-50
Seed eggNOG ortholog2880.D7FJG4
KEGG koko:K09549
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0010638,GO:0033043,GO:0044183,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0065007
EggNOG free text desc.protein binding involved in protein folding
EggNOG OGsKOG4098@1,KOG4098@2759
Ec32 ortholog descriptionPrefoldin subunit 2
Ec32 orthologEc-14_006240.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons3
Model size444
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig975.16069.1prot_P-lacustris_contig975.16069.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig975 61201..62850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817405.9022903-CDS-P-lacustris_contig975:61200..613581622817405.9022903-CDS-P-lacustris_contig975:61200..61358Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 61201..61358 +
1693495043.1287317-CDS-P-lacustris_contig975:61200..613581693495043.1287317-CDS-P-lacustris_contig975:61200..61358Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 61201..61358 +
1622817405.9132586-CDS-P-lacustris_contig975:62089..622821622817405.9132586-CDS-P-lacustris_contig975:62089..62282Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 62090..62282 +
1693495043.1419249-CDS-P-lacustris_contig975:62089..622821693495043.1419249-CDS-P-lacustris_contig975:62089..62282Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 62090..62282 +
1622817405.9238636-CDS-P-lacustris_contig975:62757..628501622817405.9238636-CDS-P-lacustris_contig975:62757..62850Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 62758..62850 +
1693495043.152588-CDS-P-lacustris_contig975:62757..628501693495043.152588-CDS-P-lacustris_contig975:62757..62850Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 62758..62850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig975.16069.1

>prot_P-lacustris_contig975.16069.1 ID=prot_P-lacustris_contig975.16069.1|Name=mRNA_P-lacustris_contig975.16069.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=148bp
MEESKVPRGALGEGGGQEMNEQQIIGAYRAMLTDANQMRRKISELEQEVN
EHQMVVDTLEPLEATRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQVLQ
QLATSRANKEKEAAEWKIKYKIRSQQEAQAMAQAQARGDPQQQALQA*
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mRNA from alignment at P-lacustris_contig975:61201..62850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig975.16069.1 ID=mRNA_P-lacustris_contig975.16069.1|Name=mRNA_P-lacustris_contig975.16069.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1650bp|location=Sequence derived from alignment at P-lacustris_contig975:61201..62850+ (Pleurocladia lacustris SAG_25_93)
ATGGAAGAGAGTAAAGTTCCACGAGGGGCTTTGGGCGAAGGCGGGGGCCA GGAGATGAACGAGCAACAGATAATAGGGGCATACCGCGCAATGCTTACCG ACGCAAATCAAATGCGGCGTAAGATCTCCGAGCTGGAACAGGAGGTCAAT GAACACCAGTGAGTCTCTCTTGAGGTCATAGTGCAAATGCAGGCGGATGA AGAGTGGTGTAAGCAGTCGTGTAGCGCAGTTTGTTCAGAGTAAATCACCC AGCTCTTTTCGCATGTCCGCCTTCGCATCGCGATGCCTCGGCGTGTGCAC TCTTCCCTGCATTGGAAAGCAGCATAGCAGTGTCTGTTGTTGGTTGTGCG GTTACTCGACCAAACCCTAGACCACACCCACTCGTGTTTTTCATAAGAAG TCCGCAGCAGCACCGTTTCATTTCTCGAAATCGATGCTCTACAAGCTATT TGATGCGACCAAATATCCTGAGAACTTGTATATTTTTCTTGTTCAATTTT AAAACGATTCCGCTCTGTGTCGCTCCCCGTCGCCGGGCCCCAGCAGGCCA CTCGGCTCCCTAACAACAAATCCCCTGTCTGCACTGCAGCATCAGGGATA GACGATTTCTTTGCTGCCCTTTTGCCTGTCATCTTTCGTTCGACTTCTTT CTTCATCCATCATGAGGGATATGGGCGGTTTATTTGTGACTCTACTAGAC CACCTCTGCAACAGGAGTAGCATAACCTAGGCAGGCCTGCTTCACAAATT CTCAAGCACCAATCGGTCGGTAGTCTAGGCCAAGACCGCTGCTTCGCTGC TCCCAATCCCAAGAAGGAGGTAGGTTCAATCGGTTTTCGACACGTTATTG CTCAACCTCTCATTGCGTTGTGCGTCCGTCTGGATCAAGAATGGTGGTGG ACACCCTGGAGCCTTTGGAAGCAACACGGAGAGCCTACCGCTTGGTAGGA GGCGTGCTGGTGGAGCGAACGGTCGGGGAGGTACTGCCCACGGTGAAGGC GAACCAGGAGGGCATCAAGCAGGTCCTGCAGCAGCTGGCCACGAGCAGGG CCAATAAGGAGAAGGAGGCGGCAGAGTGGAAGGTGGATGCAAAGAGATAA AAACATTCTTGTGATTCGTGCTCTGGTGCTAGAATAAACGTCAACATTAC AAGTAAATAATACCATGATTGTGACGAGACCGTCCTATGTGCTTGTGCTG TTTTGGATTTGAGTGGATAACTCGCAGCGACCCCGGAGAACAATATGAAA GAGTTATCGACGTTAGCGCTACTACTGTAGCCGCTAGCAGCTGCCGACGC TGCCGCTGTGCTTAACTTCCCCAAACTGAATCGTCCACTGCTACGAAGAC GAGTCTTCAGATTACACCGATTGGCGTCAATGCCTCTCTTGATTTTATAT CGGTGGGGCTCTAGGTACGCACACACTAGGGTGAACGGTGCGTGCTGCAT AGGCAAGGCGAGCAGCGGGTTTTACGTGTCTCACCTCGTGAGGTTGTCAA CCTGCTTCCCTTTGCCGATGCACCCCTGCCGCCCCCCGCATCGCCCAACA TGTCCAGATCAAATACAAGATACGGTCTCAACAGGAGGCTCAGGCGATGG CACAGGCACAGGCACGGGGGGACCCGCAACAACAAGCGTTGCAAGCATGA
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Coding sequence (CDS) from alignment at P-lacustris_contig975:61201..62850+

>mRNA_P-lacustris_contig975.16069.1 ID=mRNA_P-lacustris_contig975.16069.1|Name=mRNA_P-lacustris_contig975.16069.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=888bp|location=Sequence derived from alignment at P-lacustris_contig975:61201..62850+ (Pleurocladia lacustris SAG_25_93)
ATGGAAGAGAGTAAAGTTCCACGAGGGGCTTTGGGCGAAGGCGGGGGCCA
GGAGATGAACGAGCAACAGATAATAGGGGCATACCGCGCAATGCTTACCG
ACGCAAATCAAATGCGGCGTAAGATCTCCGAGCTGGAACAGGAGGTCAAT
GAACACCAATGGAAGAGAGTAAAGTTCCACGAGGGGCTTTGGGCGAAGGC
GGGGGCCAGGAGATGAACGAGCAACAGATAATAGGGGCATACCGCGCAAT
GCTTACCGACGCAAATCAAATGCGGCGTAAGATCTCCGAGCTGGAACAGG
AGGTCAATGAACACCAAATGGTGGTGGACACCCTGGAGCCTTTGGAAGCA
ACACGGAGAGCCTACCGCTTGGTAGGAGGCGTGCTGGTGGAGCGAACGGT
CGGGGAGGTACTGCCCACGGTGAAGGCGAACCAGGAGGGCATCAAGCAGG
TCCTGCAGCAGCTGGCCACGAGCAGGGCCAATAAGGAGAAGGAGGCGGCA
GAGTGGAAGAATGGTGGTGGACACCCTGGAGCCTTTGGAAGCAACACGGA
GAGCCTACCGCTTGGTAGGAGGCGTGCTGGTGGAGCGAACGGTCGGGGAG
GTACTGCCCACGGTGAAGGCGAACCAGGAGGGCATCAAGCAGGTCCTGCA
GCAGCTGGCCACGAGCAGGGCCAATAAGGAGAAGGAGGCGGCAGAGTGGA
AGATCAAATACAAGATACGGTCTCAACAGGAGGCTCAGGCGATGGCACAG
GCACAGGCACGGGGGGACCCGCAACAACAAGCGTTGCAAGCATGAATCAA
ATACAAGATACGGTCTCAACAGGAGGCTCAGGCGATGGCACAGGCACAGG
CACGGGGGGACCCGCAACAACAAGCGTTGCAAGCATGA
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