mRNA_P-lacustris_contig1178.1344.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1178.1344.1
Unique NamemRNA_P-lacustris_contig1178.1344.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1178.1344.1 vs. uniprot
Match: D7G604_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G604_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 6.090e-84
Identity = 134/234 (57.26%), Postives = 161/234 (68.80%), Query Frame = 1 
Query:    1 ARKKLLNDGKVLVPLFGSDQQAKEKTKSMHSCVEQYVQGKGCEVQKSMLMRKHQRIKGQHRYMIPPEDMGI-FASDADAMGETMAYVLQALDCSGYDRILVEKSTCLVSLKKTSVQVLHRDQNLEKINDLLEGKVGAATRNNTRRQPPPYSALCSFQQGTSLRCVDRSHLSNSKEYEIGDSVRCPVPLGWGLLWHGLFVHAGAECSVPWHARLHMYLKVLGCSDAATGKIDLAE 699
            ARKKL+ DGKV VPLF S+Q+A+ KT SM S V + V+     V+  ML R++ RIKGQ R MIP  D+G  F S +  M +T+ YVL ALD  GYDRIL E STCL+SL+    QV HRDQ LEKI D + G+  A TR N+R QPPPYSALC+ Q+GT LR VD SHL   K YE G +V C +P GWGLLWHGL VH G  C+  W ARLH++L+ LGC  AATGKIDL +
Sbjct:   33 ARKKLMRDGKVCVPLFASEQEARTKTSSMASAVARLVEDTDGSVKSVMLKRRYTRIKGQDRLMIPLSDLGTDFGSVSGDMEDTLVYVLWALDNPGYDRILAEISTCLLSLEGLLAQVFHRDQVLEKITDQMAGRTQAGTRGNSRPQPPPYSALCAVQEGTILRIVDGSHLDVHKNYEQGSAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKIDLVD 266
[Close]
BLAST of mRNA_P-lacustris_contig1178.1344.1 vs. uniprot
Match: D7G5U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U5_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 3.190e-63
Identity = 98/155 (63.23%), Postives = 113/155 (72.90%), Query Frame = 1 
Query:  235 MGETMAYVLQALDCSGYDRILVEKSTCLVSLKKTSVQVLHRDQNLEKINDLLEGKVGAATRNNTRRQPPPYSALCSFQQGTSLRCVDRSHLSNSKEYEIGDSVRCPVPLGWGLLWHGLFVHAGAECSVPWHARLHMYLKVLGCSDAATGKIDLAE 699
            M ET+ YVL ALD  GYDRIL E STCL+SL+    QVLHRDQ LEKI D + G+  AATR N+R QPPPYSALC+FQ+GT LR VD SHL   K YE G +V C +P GWGLLWHGL VH G  C+  W ARLH++L+ LGC  AATGKIDL +
Sbjct:    1 MEETLVYVLWALDNPGYDRILAEISTCLLSLEGLLAQVLHRDQVLEKITDQMAGRTQAATRGNSRPQPPPYSALCAFQEGTILRIVDGSHLDVHKNYEQGRAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKIDLVD 155
[Close]
BLAST of mRNA_P-lacustris_contig1178.1344.1 vs. uniprot
Match: A0A6H5L1S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.010e-8
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 ARKKLLNDGKVLVPLFGSDQQAKEKTKSMHSCVEQYVQGKGCEVQKSMLMRKHQRI 168
            AR KLL DGK  VPLF S+QQAKEKTKSM S V Q V+  G  V+++MLM+K+ RI
Sbjct:  126 ARLKLLTDGKAFVPLFLSEQQAKEKTKSMLSSVAQLVEDSGGVVKRAMLMKKYDRI 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1178.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G604_ECTSI6.090e-8457.26Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G5U5_ECTSI3.190e-6363.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1S8_9PHAE2.010e-862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1178contigP-lacustris_contig1178:45001..45838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size708
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.9529874-CDS-P-lacustris_contig1178:45000..453631622815489.9529874-CDS-P-lacustris_contig1178:45000..45363Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1178 45001..45363 -
1693493569.8612406-CDS-P-lacustris_contig1178:45000..453631693493569.8612406-CDS-P-lacustris_contig1178:45000..45363Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1178 45001..45363 -
1622815489.968345-CDS-P-lacustris_contig1178:45493..458381622815489.968345-CDS-P-lacustris_contig1178:45493..45838Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1178 45494..45838 -
1693493569.8765438-CDS-P-lacustris_contig1178:45493..458381693493569.8765438-CDS-P-lacustris_contig1178:45493..45838Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1178 45494..45838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1178.1344.1prot_P-lacustris_contig1178.1344.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1178 45001..45838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1178.1344.1

>prot_P-lacustris_contig1178.1344.1 ID=prot_P-lacustris_contig1178.1344.1|Name=mRNA_P-lacustris_contig1178.1344.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=236bp
ARKKLLNDGKVLVPLFGSDQQAKEKTKSMHSCVEQYVQGKGCEVQKSMLM
RKHQRIKGQHRYMIPPEDMGIFASDADAMGETMAYVLQALDCSGYDRILV
EKSTCLVSLKKTSVQVLHRDQNLEKINDLLEGKVGAATRNNTRRQPPPYS
ALCSFQQGTSLRCVDRSHLSNSKEYEIGDSVRCPVPLGWGLLWHGLFVHA
GAECSVPWHARLHMYLKVLGCSDAATGKIDLAEAS*
back to top

mRNA from alignment at P-lacustris_contig1178:45001..45838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1178.1344.1 ID=mRNA_P-lacustris_contig1178.1344.1|Name=mRNA_P-lacustris_contig1178.1344.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=838bp|location=Sequence derived from alignment at P-lacustris_contig1178:45001..45838- (Pleurocladia lacustris SAG_25_93)
GCACGTAAGAAGCTCCTGAATGATGGGAAGGTTCTCGTCCCCCTGTTCGG
TTCAGATCAGCAAGCTAAGGAAAAGACAAAGTCGATGCACTCGTGTGTGG
AACAGTATGTGCAAGGCAAAGGTTGTGAGGTACAGAAGAGCATGTTGATG
AGAAAACATCAACGAATAAAGGGTCAGCACAGGTATATGATCCCACCTGA
GGATATGGGGATCTTTGCATCTGACGCCGATGCTATGGGAGAGACAATGG
CGTACGTCCTACAAGCTCTCGACTGTTCAGGTTACGATCGCATCCTGGTG
GAGAAGAGCACTTGCTTGGTCAGCCTCAAGAAGACCTCGGTGCAGGTGAG
CTAGCTCAGCAGTGATGCTTGTGATGCGGGTGCGCGAACGCCCGGATCTC
CCCGAGACTCGTTGATTTCACGATGCAATGGCCAAGCACCGTCCGTCACA
TCACGCCTCCTCTCAACGGTCGCAGGTTCTACACAGGGATCAAAATCTGG
AGAAGATCAACGATCTACTGGAAGGCAAGGTCGGAGCTGCGACTCGAAAT
AACACACGACGTCAGCCGCCTCCATATTCCGCCCTCTGCTCGTTCCAACA
GGGGACTAGCCTTCGCTGTGTGGATCGCAGTCACTTGAGCAACTCCAAGG
AATACGAGATAGGGGACAGTGTCAGGTGCCCAGTGCCACTGGGGTGGGGG
TTGTTGTGGCACGGGCTATTCGTCCACGCAGGCGCCGAATGCTCTGTCCC
GTGGCACGCTCGGCTCCACATGTACCTTAAAGTCTTGGGTTGTTCGGATG
CAGCTACTGGCAAGATTGACTTGGCCGAAGCGTCCTAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1178:45001..45838-

>mRNA_P-lacustris_contig1178.1344.1 ID=mRNA_P-lacustris_contig1178.1344.1|Name=mRNA_P-lacustris_contig1178.1344.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1416bp|location=Sequence derived from alignment at P-lacustris_contig1178:45001..45838- (Pleurocladia lacustris SAG_25_93)
GCACGTAAGAAGCTCCTGAATGATGGGAAGGTTCTCGTCCCCCTGTTCGG
TTCAGATCAGCAAGCTAAGGAAAAGACAAAGTCGATGCACTCGTGTGTGG
AACAGTATGTGCAAGGCAAAGGTTGTGAGGTACAGAAGAGCATGTTGATG
AGAAAACATCAACGAATAAAGGGTCAGCACAGGTATATGATCCCACCTGA
GGATATGGGGATCTTTGCATCTGACGCCGATGCTATGGGAGAGACAATGG
CGTACGTCCTACAAGCTCTCGACTGTTCAGGTTACGATCGCATCCTGGTG
GAGAAGAGCACTTGCTTGGTCAGCCTCAAGAAGACCTCGGTGCAGGCACG
TAAGAAGCTCCTGAATGATGGGAAGGTTCTCGTCCCCCTGTTCGGTTCAG
ATCAGCAAGCTAAGGAAAAGACAAAGTCGATGCACTCGTGTGTGGAACAG
TATGTGCAAGGCAAAGGTTGTGAGGTACAGAAGAGCATGTTGATGAGAAA
ACATCAACGAATAAAGGGTCAGCACAGGTATATGATCCCACCTGAGGATA
TGGGGATCTTTGCATCTGACGCCGATGCTATGGGAGAGACAATGGCGTAC
GTCCTACAAGCTCTCGACTGTTCAGGTTACGATCGCATCCTGGTGGAGAA
GAGCACTTGCTTGGTCAGCCTCAAGAAGACCTCGGTGCAGGTTCTACACA
GGGATCAAAATCTGGAGAAGATCAACGATCTACTGGAAGGCAAGGTCGGA
GCTGCGACTCGAAATAACACACGACGTCAGCCGCCTCCATATTCCGCCCT
CTGCTCGTTCCAACAGGGGACTAGCCTTCGCTGTGTGGATCGCAGTCACT
TGAGCAACTCCAAGGAATACGAGATAGGGGACAGTGTCAGGTGCCCAGTG
CCACTGGGGTGGGGGTTGTTGTGGCACGGGCTATTCGTCCACGCAGGCGC
CGAATGCTCTGTCCCGTGGCACGCTCGGCTCCACATGTACCTTAAAGTCT
TGGGTTGTTCGGATGCAGCTACTGGCAAGATTGACTTGGCCGAAGCGTCC
TAGGTTCTACACAGGGATCAAAATCTGGAGAAGATCAACGATCTACTGGA
AGGCAAGGTCGGAGCTGCGACTCGAAATAACACACGACGTCAGCCGCCTC
CATATTCCGCCCTCTGCTCGTTCCAACAGGGGACTAGCCTTCGCTGTGTG
GATCGCAGTCACTTGAGCAACTCCAAGGAATACGAGATAGGGGACAGTGT
CAGGTGCCCAGTGCCACTGGGGTGGGGGTTGTTGTGGCACGGGCTATTCG
TCCACGCAGGCGCCGAATGCTCTGTCCCGTGGCACGCTCGGCTCCACATG
TACCTTAAAGTCTTGGGTTGTTCGGATGCAGCTACTGGCAAGATTGACTT
GGCCGAAGCGTCCTAG
back to top