mRNA_P-lacustris_contig104.399.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI) HSP 1 Score: 424 bits (1090), Expect = 6.360e-134 Identity = 225/369 (60.98%), Postives = 264/369 (71.54%), Query Frame = 2
Query: 1316 TLNTGWTYPSVQYIVRHVTVEDVDECAIDPASPQGACPGCLPHCHKHATCENRVGTYACKCPACMSGDGFVPFVSRKSGTMPAGYEEGSGCTDSCAPEITLIGDNPLIMKVGINTDIAGNPIKGKNYTADLAKLISQTSGGALCDDGLGSRCAIVIDNNGTHAGIDITSKLKIFAPEQVAS--LRWKVAYQAVDDGGNYATPKVRTVEIQELSMEEYANQKVEEALKNRPCPKCG--KLAECPKPQAPVQLPCKPSEEDREEQSSVSARLHAERGRAGKTQTKTASTRNCARDCPCSERDDCMAESECSARQNLQGEACSPGLGLNSRGQKQQEDAGGGWCLPILLSGAQQLAVAACVLLATGLIVMAA 2410
TLNT W P VQYI+RHVTVEDVDECA+D SPQ AC GC P CHKHA CENRVGTY C+CPACM GDGF PF RKSGT+PAGY+ G+GC D+CAP ITLIGD+PL+M VG+NTDIAGNPI+GK+YT +LA LI++T+GGALC+DGLGSRCA VIDNNGTH G+DIT LKI PE L+WKV+Y AVD+ GNYA PK RT+EI+E+SMEEYA+QKV+EA+KN CPKCG K ECPKP APVQLPCKPSE G G++ TAS +C+RDCP +AR Q + G ++ QK+ GGW PI+L+GAQQLAVAA VLLATG+ V AA
Sbjct: 373 TLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDDPLVMTVGLNTDIAGNPIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKN--CPKCGTGKPTECPKPPAPVQLPCKPSE-----------------GEKGRSAGNTASDISCSRDCPXXXXXXXXXXXXXAARLEEQKQ------GHSATCQKEA----GGWFFPIILTGAQQLAVAALVLLATGVSVFAA 712
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A1Z5JL32_FISSO (EGF-like domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL32_FISSO) HSP 1 Score: 127 bits (319), Expect = 2.000e-26 Identity = 68/158 (43.04%), Postives = 89/158 (56.33%), Query Frame = 3
Query: 216 LMMILTASFRPVQSTVERGREADVPNNCYLLRGTTTYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTRRTETGGESQECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCPGEDTCVPRSGRVV 689
L+ I TAS V S NC L T TY QE AP D+SGL+ + R+N+ LD V+ +++ + G +H VG+H V+ VTR + +Q C VP I D+NEC LP+GH MHH CH+SA C+NTIGSYEC CP + G V
Sbjct: 8 LLAIYTASADDVAS-----------QNCEQLPSTLTYTQEEAPRDLSGLLPVVVQRINQVLDGVVDVEVEWTGADLHGKVGEHMVQTKVTRHLKESLVTQ-CFQVPFRILDTNECLLPEGHWMHHHCHASAICINTIGSYECVCPSAEESWSEEGITV 153
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: B7FQ92_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ92_PHATC) HSP 1 Score: 121 bits (303), Expect = 1.820e-24 Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query: 282 DVPNNCYLLRGTTTYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTR---------------RTETGGE-SQECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCPGEDTCVP 671
D C LL+ + TY QE AP D+SGL+ + R+N+ LD V+ +++ + GG +H VG+H V+ VTR R + G + + +C VP I+D++EC L GHPM H+C + A C+NTIGSYEC CP D+ +P
Sbjct: 19 DAKQECELLKASLTYTQEEAPRDLSGLLPVVVGRVNQVLDGVVDVEVEWTGGDLHGRVGEHVVQCKVTRLVEVIPGTVNEQHVYRDDRGRDVATQCFHVPFTIKDTDECVLRTGHPMRHQCQAPAQCINTIGSYECICPTLDSKMP 164
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A7S2XX55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX55_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.960e-20 Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 3
Query: 279 ADVPNNCYLLRGTT-TYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTRRTETGGES----QECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCP 650
A+V +C LL TY Q+ AP ++ ++ I ++N++L+ +L ++++Y G IH++VG H + T +R+ GE +EC + + I D +ECT+P HP H CHS+A C+NT GSYEC CP
Sbjct: 81 ANVAPDCSLLNTEPLTYTQDEAPNSITNMLQIITKKINQELEGILGVEVDYPGDAIHQVVGHHLI-TTYVQRSPLNGEDDDKDRECYHLYLDILDVDECTVPVRHPWRHTCHSTATCMNTQGSYECHCP 208
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A7S2U9F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9F0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.390e-18 Identity = 55/187 (29.41%), Postives = 82/187 (43.85%), Query Frame = 3
Query: 153 AAATAMGHNNRKGQRIGLLRVLMMILTASFRPVQSTVERGREADVPNNCYLLRGTTTYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTR---------RTETGGES------------QECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCP 650
A A +G R + +++++ S Q+ R +C L+ + TY QE AP D+SG++ + GG +HR VG+H V+ +V R E G+ ++C VP I D++EC LP GH + H+C A CVNT+GSYEC CP
Sbjct: 7 AMANLLGQQRRHA--MACCSIVLLLSATSLTLTQAQPSRTTTTSHKKSCERLKTSLTYTQEKAPRDISGVLPVVVXXXXXXXXXXXXXXXXXTGGELHRRVGEHVVQCSVVRLLSAVAPDATDEDAGDVDVDVDEHGRRVVEQCFHVPFTILDTDECILPVGHALRHQCQEPATCVNTVGSYECLCP 191
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A8J9RZS3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZS3_PHATR) HSP 1 Score: 92.0 bits (227), Expect = 7.510e-17 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3
Query: 372 IYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTR---------------RTETGGE-SQECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCPGEDTCVP 671
+ R+N+ LD V+ +++ + GG +H VG+H V+ VTR R + G + + +C VP I+D++EC L GHPM H+C + A C+NTIGSYEC CP D+ +P
Sbjct: 4 VVGRVNQVLDGVVDVEVEWTGGDLHGRVGEHVVQCKVTRLVEVIPGTVNEQHVYRDDRGRDVATQCFHVPFTIKDTDECVLRTGHPMRHQCQAPAQCINTIGSYECICPTLDSKMP 119 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig104.399.1 >prot_P-lacustris_contig104.399.1 ID=prot_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=304bp MSGDGFVPFVSRKSGTMPAGYEEGSGCTDSCAPEITLIGDNPLIMKVGINback to top mRNA from alignment at P-lacustris_contig104:14830..30002+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig104.399.1 ID=mRNA_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=15173bp|location=Sequence derived from alignment at P-lacustris_contig104:14830..30002+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig104:14830..30002+ >mRNA_P-lacustris_contig104.399.1 ID=mRNA_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1824bp|location=Sequence derived from alignment at P-lacustris_contig104:14830..30002+ (Pleurocladia lacustris SAG_25_93)back to top |