prot_P-lacustris_contig104.399.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig104.399.1
Unique Nameprot_P-lacustris_contig104.399.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length304
Homology
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BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 1.090e-97
Identity = 176/305 (57.70%), Postives = 212/305 (69.51%), Query Frame = 0 
Query:    1 MSGDGFVPFVSRKSGTMPAGYEEGSGCTDSCAPEITLIGDNPLIMKVGINTDIAGNPIKGKNYTADLAKLISQTSGGALCDDGLGSRCAIVIDNNGTHAGIDITSKLKIFAPEQVAS--LRWKVAYQAVDDGGNYATPKVRTVEIQELSMEEYANQKVEEALKNRPCPKCG--KLAECPKPQAPVQLPCKPSEEDREEQSSVSARLHAERGRAGKTQTKTASTRNCARDCPCSERDDCMAESECSARQNLQGEACSPGLGLNSRGQKQQEDAGGGWCLPILLSGAQQLAVAACVLLATGLIVMAA 301
            M GDGF PF  RKSGT+PAGY+ G+GC D+CAP ITLIGD+PL+M VG+NTDIAGNPI+GK+YT +LA LI++T+GGALC+DGLGSRCA VIDNNGTH G+DIT  LKI  PE      L+WKV+Y AVD+ GNYA PK RT+EI+E+SMEEYA+QKV+EA+KN  CPKCG  K  ECPKP APVQLPCKPSE                 G  G++   TAS  +C+RDCP             +AR   Q +      G ++  QK+     GGW  PI+L+GAQQLAVAA VLLATG+ V AA
Sbjct:  437 MGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDDPLVMTVGLNTDIAGNPIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKN--CPKCGTGKPTECPKPPAPVQLPCKPSE-----------------GEKGRSAGNTASDISCSRDCPXXXXXXXXXXXXXAARLEEQKQ------GHSATCQKEA----GGWFFPIILTGAQQLAVAALVLLATGVSVFAA 712
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3J7_ECTSI1.090e-9757.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 284..302
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 303..303
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..283
NoneNo IPR availableTMHMMTMhelixcoord: 280..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig104contigP-lacustris_contig104:25332..29955 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig104.399.1mRNA_P-lacustris_contig104.399.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig104 14830..30002 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig104.399.1 ID=prot_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=304bp
MSGDGFVPFVSRKSGTMPAGYEEGSGCTDSCAPEITLIGDNPLIMKVGIN
TDIAGNPIKGKNYTADLAKLISQTSGGALCDDGLGSRCAIVIDNNGTHAG
IDITSKLKIFAPEQVASLRWKVAYQAVDDGGNYATPKVRTVEIQELSMEE
YANQKVEEALKNRPCPKCGKLAECPKPQAPVQLPCKPSEEDREEQSSVSA
RLHAERGRAGKTQTKTASTRNCARDCPCSERDDCMAESECSARQNLQGEA
CSPGLGLNSRGQKQQEDAGGGWCLPILLSGAQQLAVAACVLLATGLIVMA
ASR*
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