mRNA_P-lacustris_contig104.399.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI) HSP 1 Score: 424 bits (1090), Expect = 6.360e-134 Identity = 225/369 (60.98%), Postives = 264/369 (71.54%), Query Frame = 2 Query: 1316 TLNTGWTYPSVQYIVRHVTVEDVDECAIDPASPQGACPGCLPHCHKHATCENRVGTYACKCPACMSGDGFVPFVSRKSGTMPAGYEEGSGCTDSCAPEITLIGDNPLIMKVGINTDIAGNPIKGKNYTADLAKLISQTSGGALCDDGLGSRCAIVIDNNGTHAGIDITSKLKIFAPEQVAS--LRWKVAYQAVDDGGNYATPKVRTVEIQELSMEEYANQKVEEALKNRPCPKCG--KLAECPKPQAPVQLPCKPSEEDREEQSSVSARLHAERGRAGKTQTKTASTRNCARDCPCSERDDCMAESECSARQNLQGEACSPGLGLNSRGQKQQEDAGGGWCLPILLSGAQQLAVAACVLLATGLIVMAA 2410 TLNT W P VQYI+RHVTVEDVDECA+D SPQ AC GC P CHKHA CENRVGTY C+CPACM GDGF PF RKSGT+PAGY+ G+GC D+CAP ITLIGD+PL+M VG+NTDIAGNPI+GK+YT +LA LI++T+GGALC+DGLGSRCA VIDNNGTH G+DIT LKI PE L+WKV+Y AVD+ GNYA PK RT+EI+E+SMEEYA+QKV+EA+KN CPKCG K ECPKP APVQLPCKPSE G G++ TAS +C+RDCP +AR Q + G ++ QK+ GGW PI+L+GAQQLAVAA VLLATG+ V AA Sbjct: 373 TLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDDPLVMTVGLNTDIAGNPIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKN--CPKCGTGKPTECPKPPAPVQLPCKPSE-----------------GEKGRSAGNTASDISCSRDCPXXXXXXXXXXXXXAARLEEQKQ------GHSATCQKEA----GGWFFPIILTGAQQLAVAALVLLATGVSVFAA 712
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A1Z5JL32_FISSO (EGF-like domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL32_FISSO) HSP 1 Score: 127 bits (319), Expect = 2.000e-26 Identity = 68/158 (43.04%), Postives = 89/158 (56.33%), Query Frame = 3 Query: 216 LMMILTASFRPVQSTVERGREADVPNNCYLLRGTTTYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTRRTETGGESQECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCPGEDTCVPRSGRVV 689 L+ I TAS V S NC L T TY QE AP D+SGL+ + R+N+ LD V+ +++ + G +H VG+H V+ VTR + +Q C VP I D+NEC LP+GH MHH CH+SA C+NTIGSYEC CP + G V Sbjct: 8 LLAIYTASADDVAS-----------QNCEQLPSTLTYTQEEAPRDLSGLLPVVVQRINQVLDGVVDVEVEWTGADLHGKVGEHMVQTKVTRHLKESLVTQ-CFQVPFRILDTNECLLPEGHWMHHHCHASAICINTIGSYECVCPSAEESWSEEGITV 153
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: B7FQ92_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ92_PHATC) HSP 1 Score: 121 bits (303), Expect = 1.820e-24 Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3 Query: 282 DVPNNCYLLRGTTTYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTR---------------RTETGGE-SQECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCPGEDTCVP 671 D C LL+ + TY QE AP D+SGL+ + R+N+ LD V+ +++ + GG +H VG+H V+ VTR R + G + + +C VP I+D++EC L GHPM H+C + A C+NTIGSYEC CP D+ +P Sbjct: 19 DAKQECELLKASLTYTQEEAPRDLSGLLPVVVGRVNQVLDGVVDVEVEWTGGDLHGRVGEHVVQCKVTRLVEVIPGTVNEQHVYRDDRGRDVATQCFHVPFTIKDTDECVLRTGHPMRHQCQAPAQCINTIGSYECICPTLDSKMP 164
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A7S2XX55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX55_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.960e-20 Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 3 Query: 279 ADVPNNCYLLRGTT-TYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTRRTETGGES----QECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCP 650 A+V +C LL TY Q+ AP ++ ++ I ++N++L+ +L ++++Y G IH++VG H + T +R+ GE +EC + + I D +ECT+P HP H CHS+A C+NT GSYEC CP Sbjct: 81 ANVAPDCSLLNTEPLTYTQDEAPNSITNMLQIITKKINQELEGILGVEVDYPGDAIHQVVGHHLI-TTYVQRSPLNGEDDDKDRECYHLYLDILDVDECTVPVRHPWRHTCHSTATCMNTQGSYECHCP 208
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A7S2U9F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9F0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.390e-18 Identity = 55/187 (29.41%), Postives = 82/187 (43.85%), Query Frame = 3 Query: 153 AAATAMGHNNRKGQRIGLLRVLMMILTASFRPVQSTVERGREADVPNNCYLLRGTTTYKQESAPTDVSGLIGAIYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTR---------RTETGGES------------QECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCP 650 A A +G R + +++++ S Q+ R +C L+ + TY QE AP D+SG++ + GG +HR VG+H V+ +V R E G+ ++C VP I D++EC LP GH + H+C A CVNT+GSYEC CP Sbjct: 7 AMANLLGQQRRHA--MACCSIVLLLSATSLTLTQAQPSRTTTTSHKKSCERLKTSLTYTQEKAPRDISGVLPVVVXXXXXXXXXXXXXXXXXTGGELHRRVGEHVVQCSVVRLLSAVAPDATDEDAGDVDVDVDEHGRRVVEQCFHVPFTILDTDECILPVGHALRHQCQEPATCVNTVGSYECLCP 191
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Match: A0A8J9RZS3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZS3_PHATR) HSP 1 Score: 92.0 bits (227), Expect = 7.510e-17 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 372 IYDRMNEDLDHVLKLDINYVGGVIHRLVGKHDVRATVTR---------------RTETGGE-SQECMLVPVVIEDSNECTLPQGHPMHHECHSSAGCVNTIGSYECSCPGEDTCVP 671 + R+N+ LD V+ +++ + GG +H VG+H V+ VTR R + G + + +C VP I+D++EC L GHPM H+C + A C+NTIGSYEC CP D+ +P Sbjct: 4 VVGRVNQVLDGVVDVEVEWTGGDLHGRVGEHVVQCKVTRLVEVIPGTVNEQHVYRDDRGRDVATQCFHVPFTIKDTDECVLRTGHPMRHQCQAPAQCINTIGSYECICPTLDSKMP 119 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig104.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig104.399.1 >prot_P-lacustris_contig104.399.1 ID=prot_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=304bp MSGDGFVPFVSRKSGTMPAGYEEGSGCTDSCAPEITLIGDNPLIMKVGINback to top mRNA from alignment at P-lacustris_contig104:14830..30002+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig104.399.1 ID=mRNA_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=15173bp|location=Sequence derived from alignment at P-lacustris_contig104:14830..30002+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig104:14830..30002+ >mRNA_P-lacustris_contig104.399.1 ID=mRNA_P-lacustris_contig104.399.1|Name=mRNA_P-lacustris_contig104.399.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1824bp|location=Sequence derived from alignment at P-lacustris_contig104:14830..30002+ (Pleurocladia lacustris SAG_25_93)back to top |