mRNA_P-lacustris_contig1036.379.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1036.379.1
Unique NamemRNA_P-lacustris_contig1036.379.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1036.379.1 vs. uniprot
Match: A0A6H5JM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM15_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 6.430e-60
Identity = 112/132 (84.85%), Postives = 118/132 (89.39%), Query Frame = 1
Query:  574 TGSTTARREVSEWLKAQTDDAGDG-VGRIEIDHVKEEERRIVLKEASRGQVFSITYQKEYPNSADEYLFLETDSKVADFVAVINDLRDFLYGQPTSLTLTCLLDQLKRFLQKKSAKKSKGALGA-PSTATSG 963
            +GSTTARREVSEWLK+QT +AGDG VGRIEIDHVKEEERRIVLKEASR QVFSITYQKEYPNS DEYLFLETDSKVADFVAVINDLRD++YGQPTSLTLT LLDQLK    KKSAKK  GALGA PS+A  G
Sbjct:    2 SGSTTARREVSEWLKSQTTEAGDGGVGRIEIDHVKEEERRIVLKEASRAQVFSITYQKEYPNSVDEYLFLETDSKVADFVAVINDLRDYVYGQPTSLTLTALLDQLK----KKSAKKGMGALGAAPSSAALG 129          
BLAST of mRNA_P-lacustris_contig1036.379.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.620e-28
Identity = 83/132 (62.88%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  574 TGSTTARREVSEWLKAQTDDAGDG-VGRIEIDHVKEEERRIVLKEASRGQVFSITYQKEYPNSADEYLFLETDSKVADFVAVINDLRDFLYGQPTSLTLTCLLDQLKRFLQKKSAKKSKGALGA-PSTATSG 963
            +GSTTARREVSEWLKAQT  AGDG VGRIEIDHVKEEERRIVLKEAS GQVFSITYQKEYPNSADEYL                                       RFLQKKSAKK KGALGA PS+A  G
Sbjct:    2 SGSTTARREVSEWLKAQTVGAGDGGVGRIEIDHVKEEERRIVLKEASGGQVFSITYQKEYPNSADEYL---------------------------------------RFLQKKSAKKGKGALGATPSSAALG 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1036.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM15_9PHAE6.430e-6084.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMN8_ECTSI1.620e-2862.88Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1036contigP-lacustris_contig1036:49710..59087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog2880.D7FMN8
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons6
Model size1377
Cds size816
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.801092-CDS-P-lacustris_contig1036:49709..498061622815304.801092-CDS-P-lacustris_contig1036:49709..49806Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 49710..49806 -
1693493464.4507933-CDS-P-lacustris_contig1036:49709..498061693493464.4507933-CDS-P-lacustris_contig1036:49709..49806Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 49710..49806 -
1622815304.813575-CDS-P-lacustris_contig1036:50799..509431622815304.813575-CDS-P-lacustris_contig1036:50799..50943Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 50800..50943 -
1693493464.4628067-CDS-P-lacustris_contig1036:50799..509431693493464.4628067-CDS-P-lacustris_contig1036:50799..50943Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 50800..50943 -
1622815304.8232968-CDS-P-lacustris_contig1036:51913..521581622815304.8232968-CDS-P-lacustris_contig1036:51913..52158Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 51914..52158 -
1693493464.472315-CDS-P-lacustris_contig1036:51913..521581693493464.472315-CDS-P-lacustris_contig1036:51913..52158Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 51914..52158 -
1622815304.8337736-CDS-P-lacustris_contig1036:53252..533691622815304.8337736-CDS-P-lacustris_contig1036:53252..53369Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 53253..53369 -
1693493464.4814777-CDS-P-lacustris_contig1036:53252..533691693493464.4814777-CDS-P-lacustris_contig1036:53252..53369Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 53253..53369 -
1622815304.8438542-CDS-P-lacustris_contig1036:54678..548341622815304.8438542-CDS-P-lacustris_contig1036:54678..54834Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 54679..54834 -
1693493464.4996786-CDS-P-lacustris_contig1036:54678..548341693493464.4996786-CDS-P-lacustris_contig1036:54678..54834Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 54679..54834 -
1622815304.8529048-CDS-P-lacustris_contig1036:58469..585261622815304.8529048-CDS-P-lacustris_contig1036:58469..58526Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 58470..58526 -
1693493464.510262-CDS-P-lacustris_contig1036:58469..585261693493464.510262-CDS-P-lacustris_contig1036:58469..58526Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 58470..58526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.8614323-UTR-P-lacustris_contig1036:58526..590871622815304.8614323-UTR-P-lacustris_contig1036:58526..59087Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1036 58527..59087 -
1693493464.5183933-UTR-P-lacustris_contig1036:58526..590871693493464.5183933-UTR-P-lacustris_contig1036:58526..59087Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1036 58527..59087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1036.379.1prot_P-lacustris_contig1036.379.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1036 49710..58526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1036.379.1

>prot_P-lacustris_contig1036.379.1 ID=prot_P-lacustris_contig1036.379.1|Name=mRNA_P-lacustris_contig1036.379.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=272bp
MSGSTGSTTARREVSEWLKAQTDDAGDGVGRIEIDHVKEEERRIVLKEAS
RGQVFSITYQKEYPNSADEYLFLETDSKVADFVAVINDLRDFLYGQPTSL
TLTCLLDQLKRFLQKKSAKKSKGALGAPSTATSGDREEGLQGDTGAGGEG
IGGIGVMAEVRVATETEVTITVERMERRARRARRRKETNPTTFVSELFFC
RQLRRRRGRRGGRRGGGSGRRAEGVNVVGRALQKEELAGVKRRCERRWRR
TRRGRPSRRRTPARRGSSPRRR
back to top

mRNA from alignment at P-lacustris_contig1036:49710..59087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1036.379.1 ID=mRNA_P-lacustris_contig1036.379.1|Name=mRNA_P-lacustris_contig1036.379.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9378bp|location=Sequence derived from alignment at P-lacustris_contig1036:49710..59087- (Pleurocladia lacustris SAG_25_93)
AGCAGACGACAGTACTGTAGCAGTCTCGACAGCAGGTATCAGTGAGTACA TTTACGTGTTGTACGTCGAGATGGCCACAGAAATACACTGCTGTGTGGGA GGCCCTCATAAACTTTGAAGTCTCGATCGATGACAGCGCGTGCGTTTGTT TCCTTGTTGTGCTGAAGATTCACACACACCAACCCTTTGCTTGTGTGTGT CGTCGCCCTGCGTCTCTCCTTCCGTTGCTCCACCCTGACTTAATCTCCCT CCCTGTCCGATCGGTGTCAACCCAGCTTGTGTGTCGAGAGGAGGCACAAA AGGGGGACGCTTCTCCCAAACGCCGCCCTCCAAGAAAACCCTACGCTGTA GTACTGGGGCTGCACCCCACGCGTGCTCTTCCAAGTGTGGGCACAACAAC TGCGCTCCCACGGGTCGCACGTTTGTGCAACCACCGTCAGGGAAGGGTTT TAATGGGAGGGGGAGAGGGTCAGTGAAAGGGGCGAGCGAGCTAAGATTTG CTTTCTAAATTGGGAAGAGGTCTGGAATCGGGCATTGACACGACAGATAC GCGGGGAAAACATGTCGGGTTCAACGGGTTCAACCACTGCCAGGAGAGAG GTCTCGGAGTGGCTGAAGGTGGGTGGTGACTCCTTCGTTTCTCTCCAGAA GTTCACAGCTGGTGCACTGCCTTCTCTTGCGGTTGAAATATGGTTGTTTG TGGCTTTCATGTGCCAGATAGTCCGCGCGCGAACACGAGAAACCGTTCAT CCATCAGTTACACCCACGCCCGTGGCTGTGCACACGCCCATGGCCGCCCC CTCCCCGTTGCCCAGTCACTGCGTCGGGTTAGATGTATCATGTTGACCGC GCTCGCAACATCCGTAGCCCCCCTTTCCACTTACAGCAGTGGGGTCTGGT CGCGATCTAAGAGAATCCTCTTTGCGCGGTATTTCCACGCAAGATACCAC ACCCCCGTGAACCGATTTGCACGACCCTCGATTTCTCGACGACGTGGAGT GTTGATGATTTCGTCTCCATTTCGTCTCCATTTTCGTCTCCATTTGCACA AAAATTAAAAATAAATAAACTCCCAACCGAGCAACCAAACAACCAAGACA AATTTAATTATATTCTTTCCATTTCCATTTTTGCCAAACAAAAGAAAATC GAAGCAAAAGGTTTGTCTTCCTAAAAACCAATAAATAAATACGAACAGAA ATACGACGATGACCCCGACGCCGCCGAGGAAGTCCGCAAGCCCTCCTTTC GTCGCCCAAAACCCAAGAAATAAAAATAAATGTATTCAGACCAAACAAGA AGACAAACAAAACGAAAAACAAAACAAAATCTTATTTCGTCCCCACATGC ACGAAAATCCAAATTGTTTCTCTTTTCGTCTCCAAATGCACGAAAATTTA AATTGGTTCTCGTGGAGTTTGTATAGCCGGAAAAAAAAATAGTTGTGGTT CCCTGATGCCATTGCTAGCATGGCATGATGACCAGTCAGTTGTTGCGGAC CTTTTTTTCTCCATGCAACAGCAGTTTTTCGCAGGTTTGTGCACACGTAT GCACAGCTATTTGTACACGCAGCACACGGTGCACGCGCCCAACGCGTGAC GCTACACGACCAGCTTCCTCCACACAGGTTCAAGATATCCCATCGTTGTT GACGCAGCAGCCCGGCCGCACTGCCTAGTTTGTCAGAGTTGGACAGGACT CGCCCCCTACTCTTCCTTTCAGAAACGAGTTTGTAACACAATACAGAGAT CGACGGGTAGCCAAGGGGCTAAAAAATTTTGGCTATCGACGACCCGACTG GAGTTCAAAATCTCCGTGTTGACTTTGGCATCTGCCTTTTTTTCGGTACG ACCGAAAAGAGTGCTGGGTGCTCGCGCGCACGTACGGCAGTACACGTAGC GCCGAAGTTTATCGCGGGCACGAATATTGAAATTGGTAGGTAGCATGTAA CATACGGCGGTGATATCGAAACCTTGTCGCGGGCGCGTCGCGTGGTGTTG GCACCCTCACTGGTGTGGAAAAACCCAGCTAGCTTTGAAAATGGAACACG GTCCGGTTTAATTAAGTTGGTCAAGTCCGCGCAACACTCAGCGGGAGAGA CTGTCAGTTTCTAAGGCTGCTGCATTCTTTTTTCGCGTCTCTTTTCGTTA TTTTCATGCGAAAATAAGCTCTTTTTCAAAATTTTACACACAAATTCATC TGTTATAGAACTACAAATACAAAAATATCGCTCGACTGCAAGCCGGTTGA ACGCAACACAGCCTCCTATCAAGCAACATGGCACACAGGTTGGCTGCTGC TACTGCTGTGATCCTTGTCAAAAAAACTGAAACACGCCCCCATGTGAAAA TCCGTACTTTTAGGCATTTCTGGGTCGTTTTGGGGTGTACGGCATCGAAA GATCGAACACCGCACCTGTCGAGACCACGCGATGTTAGTGTTTTATTACG CTGCCATTGGTCTCAGCTACCTTCTACACCCAAGACTTCGGCCGCAAAGG CCGAACCCACCGTTTACAGCAGTATCCTACATATGGTTGTTTTCGATAGG TGAGGAAGAATCGCCATGTTTCTGTCGCCGAACGCACACAATCTAAAATC TATTACAACTGCTGTACTCGTGTGTTTGGAGCCTCTGTTTCGCGGAGCTA TGACAGCCATACAGCGGCCCTCGGGTGATGATTACGTGCAGCTGGGACTC GTTCGTATCCTTCGGGTCATTGTCGCCTGCAGCGGCTGGCATCACACCAA ACATGAAACATTATGTTTTGTGTCCGTAGTCCACTTAAACAAGACCAAGC GACATGCGCAGACGACGAAACGCTTCAAGATTGCACAGCGGCCGATTCCA AACGCTAACATCGCGTGGACGCTCCCTCCTGAGGCCCTTACTCCAAAATA GCTCGATCCGACAGTAGTACAAGCCACAAAAAGCGAAACCATCGTTTTTT TCCGTAGTAAATGGGAGGGGGGGGGAAGAGGACGGCGCGGCCTTAACCGC ATGGCACAACCCTATGTTTAAAATATGAACCCATACTCCCCTCAAACCGA CGTCCCCCACTCCCGCCTTGAGAACTCGCTAGAAACTCCGGCTCTGCTAC CCTGACCCTGAGCAGTGGTGATATGGTAGCGATCGAGCGGGCGACAATGC CACTACCAACAGCTCACAACGTCACAGTCTGCAGCACGATACCCTGCGTT TTGCGTGGTCGGGTGGGCCATATGATGCCTTTAGATTACACGTGTAGGTT GGAATATTCTTGGAATATTCTTGGAATATTCCACGAAAGGTCGAGGGATC GCCTACAACAATGTTCCATTTGTTTCGAGGCCTGTGGTGAGAATGTTTTC TGGGAAATAATTCTGTACATGGCTACGTTCAGAATTGTGTTTAATTTTCT TTGGGCAAATGCTGCATGTACAGACATCAAAGAGACCACTACAGATTTTG TGTAGAGATTCTCTGGACATTCGTACAGCACAGTAAAGAATACCTACAGC AGTCAGGCTCAGCAGTAGAGTAGCCTGACTGCTGTGCTGTACTGCTGCGA TGTGCAGGGATCTTCCGTGCTGGGTGTCGGCAGAGGCGTTGTTTCTCGAC AAAGAATGCGATGGTCGCACATCGTCACAACGTATGTTCTAGTAAGTCTG GACCTCAACACACCGGAATTGATGCAAACATGCGATGCAACACGCGTGGA TGAGCTTCATTACCACGGCACAAGCTTCTCTCCCATCGCTTATGACTCTC CGCGCAGCCTGCCTGTTTCCTGTCTAGAACCCGTTTATTCGATCGAAGGT AGGGCTTCTCTCAAACCACAGCAATCTCTACTTTTCAAGAGAAACACTCA TTAAGGAAGAGGTGCGGGTCACTGTCACCCAAGTCCATAAGGGCAGACCT CCTCTTTGACAATCCAGAAATACTCCTGATTTTATCCGTTGCTACTACAT TGTAAGGTCAGCACAAGAACACCATCGCGACTGCTGTACACACTCCGTCC GCGAATGCTTCGTGTCTTGGACCCCAAGACTGCTGGTTTTTGATTTCGAC CACCTTTTAGCGATTGCGCTTCGGAAAATGAGGCTGTGCAGCCCGAGCAC GCCCCGCCCCGTGCCAAGCTGATGTACAGCAGTAGGAAATTGGCCCGTTT TCAAAACAGCATCTGCCGTTTAACAGCATAGAGGGCTACAGCAGCAGCAG TAGCAACAGCAACAGCATGCAAACGGACGACATTTTCCTCGTTTTTTTTT CAGGCGCAAACGGACGACGCCGGAGACGGCGTCGGGCGGATCGAGATTGA CCACGTGAAGGAGGAAGAACGGCGGATAGTGCTCAAGGAGGCCTCGCGGG GGCAGGTGTTCTCGATCACGTATCAGAAGGAGTACCCCAATTCGGCCGAT GAGTACCTGGTGAGACATAGAGGAGCATCGGACAGATGAGAGCTCAAGGG GCTCCGACAGAAGAGAAAGGACAGGCGCATAAGTGCTGAGGTATTCGATT AAAAAGAAATTCCGTGATGCATCCGCCCGCCCGCCTGGGGCGAGGGAGAA GCTGGAGACTCACACATATGATCACGGCTGCCAACAGACAAACAGCAAAC CCAGAGTTTCCGCGCGTAGTGTAGCGGCGTCCACCTACAGCAGCGGCATG CCAGTTTCTCAACAAAGCCATATCGCATTCGACTAAAGGGGACAGGGGAC AGGCGTTGACCTTTTTTACGGCGTGCCAACTTAGTTGGTATTGTGTATGG AGCATCTCACTTTTTTTTTTGCCTCTCCGGGAAGCACACATGACAGAGCC TCCGGTAGCACGTAACACGTGCAGCGAACCCGTTCGTGTTGTTGACTTTA CAGGCGACTGTTTGCGTCGGTGTGAAGTCCGTGTCAGTGTGATCCGGTTA CCGTACCGTTTGTTTTTTTTTCACGGTGCCGGTAGGTGTATCGCCTTCTC GGTTCCTGTCTCGATAGGTCGGGGATACAATTGTAGGGGATACGATCCTC GTCGTCGTTCAAGAGCAGCTCCCCGCCTAGTGTCGGCCGCGATGTCGATG CTACCTGCCCATTTATCCAGTCGTCGTGGACCTCCTTGAACAGCATCCAT CGTTGGGAGCCTTACCGTACCATGACCGCCTCACCAAAACTGTGACGTGA AAAGAGCCGTTTGTCGACGGATCTTGCCAGAAGTTAACCCAGTCTTCTCT CTCTCTCTCTCTCTCTCTCTTTATCTGGTGACATTATCACGTCTCGAGTC GATGAAAGAGACAATGGTAAAATGCGCCTGCCTGATTGTTCACGTGGAGT TTTAGTTGCTCGTTTACTCCAGTATGTTGTTTGCCCTCCGACGAACCAGA AAAAAAATGAAAAAAACAGGCCGTTCGCTCACCACAGCACATGAGCAGTT ATCCAGTCCAATCGTTCGCATACCGCATCGATTAGAGTTAGTTCGTAGCG TGAAACACTTCTGTCGTCCAGCTCTTCGCCGACGTGGTCTTGCGCATCGG GGTTCCAAGGTTGCCGCCATTGACGCAGCACACTCGTGAAAACCTGTTGG GTGTCGCAGTGTGATGACATCTTCTCGTGGTTCGTGATGTCGTTGGTCTA GGGTCGTTCCGAATACTGCGATATTTTCAAAGAAAAATGTAGCGTTTAAA ACAGCGTCGTCCGCGCCCCCGCCCCCGCCCTCCATCTGCCTCTGCCCCTA CCCTGGAACCGGTCACAGTTCTTAGAGACGGACTCGAAGGTAGCCGACTT CGTGGCCGTGATCAACGACCTCCGGGACTTCCTGTACGGGCAGCCGACAT CGCTTACCCTCACCTGTCTTCTCGATCAGCTCAAGGTGCTCTTGATTGTT GGAGGTGGCTTCCTGGTGGCTCGTTCATGTTATTTGGATTGTCGCTCTTG ATGTCGGCAGCGCCTCTAGGTTTGACCGTAGTGTTCATCCTGGGCCAGCT TGAGCCAGCCTACCCCTTCTCCCATGCCCGTGGTGGCAGCGTCAGTATCA ATATCGATTGGAGCCTAGGCTGCGTCGTAGATGGGCGTGTGTGGAGAGAC AACTGACCGTTTCCCCTCCCGCCCCCTGTTCCTCAAGGGGTTTTTTGTCG TAGGATATGTGGTTCTGGTATTCCAGCAGTTGTCGCGCGCCCTCTCTGCT AAGCGGTAGGAAAGTCTGATTAAAGGCCGGTACGTTGGCAAGGGCTGATG AGCACGCGTAACGCATGCATTCTACCTTCCGGACCTGGACGCTTGCCAAC ACCTTACTCAGAACCTGACTCGACGAGCTATGCCAACGAGTTGCGCTACA TGTACTCTGCGAAGGACAGGTTTCATCGGATTGTTGTTGTTATTCGGGAG CGCTACTGTACGCTAGCGCAGCACCGAAATGATGGTCCCTCCATTTCTCA ATTGCCTAATGGGCTGCTGTGCTTGCCCCTCACGGCCCGAACTTGCCCCT CGGGGTATGCTCTTCGGGTAACTTACTCGGGACCGAAAAATTCGCGCGAA ATCTGCGTAGATTCAGGGTGGGGTTCTTCGCTCTCCATCCATTGTGTGTG CAATGCGGTAGGTTGAGAAGGCACTCCGGAAAGACAACATGCGCGAAAAC TGACCTGCCCCTTAACTGAGCTGTACCTTGAATCTGTCGTACCTCGCCCC GCCCCCGCGTGAGTTTAGAATGTGTTTTATCGGGGGGGCCTTCGCCCGCT AAGGCTGGACCGTCATGAAGTCTGTTCGTCAGCCGGTTAGCGCGATGGAT GCTAGTTAAGCAGACACACACACAAAACATCAAAGGCAGACTGCCGTCAT CATCGTATTTTTGTCTCGCTAAGTAACGACCGGCGTTTTTTCATTGGTCA ATCCGGTTAGGCGCGGTCGATGCTAATAAATGCAACACACACATACACAC ACCCGCCGCAACAAAACAAAACCACGCAGCGATTCCTGCAAAAGAAGTCT GCTAAGAAAAGCAAAGGAGCCCTGGGAGCGCCTTCTACCGCCACCAGCGG GGACCGCGAGGAGGGGCTCCAAGGGGACACAGGGGCGGGGGGAGAGGGGA TCGGGGGAATTGGAGTGATGGCGGAGGTGCGGGTAGCGACGGAGACGGAG GTAACGATTACCGTGGAGCGGATGGAGAGGAGGGCGAGGAGGGCGAGGAG GAGGAAGGAAACGAATCCGACTACGTGTGAGTATACTGCTGTAGATCAGG TCCCTTCGAACGGGGTAAATGGCGATGGGGGACGAGGCTGGAACGACGGG TTTTTCCGTGGAGAAAGAACCAAATAACGGGAATAGAGTTGTTCCTTGGC ACATTCTCGCGCGAGCACGACAGCTGTGATAGCCGTTTTGATGTGCCAGC TTTTTGGTGAGACGGCCGGGTGGGTTTTCATGCCATTTTCAAGGAGGCAA AGGATACTTCTACCGCAGAGCGGACAGTGGTGCTTCCACGGCGTGGAGAG GGTTGGTCTGGGGGGATTGACGTTCAGTCAAGGAGGAAGAAACAGCCAAG CGGGAAGCGGGCTGTGATTTGTAGCCCGACGACGTGCTTGTTCGCCGGGT GGTTTATGTTTTGGGACGGCGGGCGGGTAAGGGGAGAGGGGTGGGATATC GCGGGTGCCGCAGACGGAGAAAGGAGAGACGAGGATGGATTGCATCGATC GAGTGGCTGAAGAGAAAAGGGGTATTAACTGTGGGAAGAGAAAAGGGGTA TCAACGGTGGGAAGAGAAAAGGGGTATCAACGGTGGGAAGAGAAAAGGGG TATTAACTGTGGGAAGAGAAAAGGGGTATCAACGGTGGGCTGCGGAGGGC GGGAATTGGATGGATGCTCTCGCCCGCTTGACTTGTTTTTGTGGCTTGGT CGTCTACACGCAGACAGACACCAGAGTAGTTTTTGTCAGCTCGGAGGCAG GTGGTCCACACACATCTCCGTGAGGTCTCGGAGCCACAGGAGGAGTGCTG GGTAATTGTGTCGTGTATTCCTCGTTACCATCTATTTTATTCTGGAGGCT GGACCGTCCGTCCGTGGCAGTCCCCTCACGGAGGGGACCCCGCGGTCTAG AACCGTGCTGGCGTTTTTCTGTCCGGCTTAGACGGGGCTGTCATGACGTC TTTTCATTGGTCATCCGGTTGGCGTGGTCAACGAAAGAGGCAAGCTTCGT TTCGGAACTATTTTTTTGTCGGCAGTTACGAAGACGACGAGGAAGAAGAG GCGGCAGGAGGGGCGGCGGGAGCGGACGCCGCGCAGAAGGGGTCAACGTG GTTGGACGAGCACTACAAAAAGAGGAACTGGCAGGTGTGTGCGGGGGGGC GGCCCAGGTACATAGCGTATCAGAGCAGTACGTGGGGCCACGTGGTGCAA TCAAAGGCGTTCGTTTCAGATGACGATTGTTCACGGCTAGCTCGTGTGAG GTGACCTCGGCAAGAGGAAGGAAGCGCTCTCACTCGTTTTGCGACGTTAG AGCAAGGGACGAAATCATTCACGGCTTTGTGTTCATAGCCTTGGTTTTTG CGGCTGAAGGTGGGGGGGTGCCGCTGTCTGACGTGGATCGTTGGCGTACA GGATGCGACAGTCCCCTCCCCCTCCATCCCGAAATGGTGGTGGTCGTTGT CCTCGCGTCTCCAAGAATGTTTTCGCCCAAAATATTCCTTGGGTGGCAGA ATCCGAGTTTTTGTCCGCCCGACTGGGTTAGGGTTAGGATTAGGCGAGCG GTGCTTTCAGGAGATACGAACCATCAGGGAGGAAGTCTTTTTTTTTCCAG GAATTGTTCGACCCCCCTCGACTCTTGAAAATACCAACCGTAAGAAACCT ACTCACTTGTTATTTCGCGAGATATCGATTGATTGTTCAGGAAGAGATGT TGATGGATGAATTAGCGTGATGTCCAACTAGATTTTTTTCGAGATTGGCG CTCCGGCAGCACTTTTTTATTGCGGGCACGCCGACACGTCGCGTCGACGA GGACTGGCTGGCCCAGACGAGGCTAGGCTAGAGCAAAGCGTACTCCAGCG TCGTCGCTGAGAATGTCATCGCTGAGTCGGTCGTGATGGTCACTCGCGCG CACGAAGCGGGTCGTGCAGCAGGCGGGATTCACCTCTGCTGCTGCGCGGC GGGCGCCGACGAGGTCGCATGTCCATCTGGCAAGCAAAAGCAAAAGCAAA AACAAGAGCAAAAGTTAAGCTTACACATCCTCGCTTCGGGACCGACCCAA ACCAACCCCACGCCCACGCCCACGTTCTCTCCGAAGCATGATCCAATTTT GTCCCCCAAACGAAACATTGTTCAGAAAAAGGAAAAGGCGTTGCGAGAGG AGATGGCGGCGAACAAGGAGAGGGAGGCCAAGCAGAAGGAGGACGCCGGC AAGAAGGGGGTCAAGCCCAAGAAGGCGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1036:49710..59087-

>mRNA_P-lacustris_contig1036.379.1 ID=mRNA_P-lacustris_contig1036.379.1|Name=mRNA_P-lacustris_contig1036.379.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1632bp|location=Sequence derived from alignment at P-lacustris_contig1036:49710..59087- (Pleurocladia lacustris SAG_25_93)
ATGTCGGGTTCAACGGGTTCAACCACTGCCAGGAGAGAGGTCTCGGAGTG
GCTGAAGATGTCGGGTTCAACGGGTTCAACCACTGCCAGGAGAGAGGTCT
CGGAGTGGCTGAAGGCGCAAACGGACGACGCCGGAGACGGCGTCGGGCGG
ATCGAGATTGACCACGTGAAGGAGGAAGAACGGCGGATAGTGCTCAAGGA
GGCCTCGCGGGGGCAGGTGTTCTCGATCACGTATCAGAAGGAGTACCCCA
ATTCGGCCGATGAGTACCTGGCGCAAACGGACGACGCCGGAGACGGCGTC
GGGCGGATCGAGATTGACCACGTGAAGGAGGAAGAACGGCGGATAGTGCT
CAAGGAGGCCTCGCGGGGGCAGGTGTTCTCGATCACGTATCAGAAGGAGT
ACCCCAATTCGGCCGATGAGTACCTGTTCTTAGAGACGGACTCGAAGGTA
GCCGACTTCGTGGCCGTGATCAACGACCTCCGGGACTTCCTGTACGGGCA
GCCGACATCGCTTACCCTCACCTGTCTTCTCGATCAGCTCAAGTTCTTAG
AGACGGACTCGAAGGTAGCCGACTTCGTGGCCGTGATCAACGACCTCCGG
GACTTCCTGTACGGGCAGCCGACATCGCTTACCCTCACCTGTCTTCTCGA
TCAGCTCAAGCGATTCCTGCAAAAGAAGTCTGCTAAGAAAAGCAAAGGAG
CCCTGGGAGCGCCTTCTACCGCCACCAGCGGGGACCGCGAGGAGGGGCTC
CAAGGGGACACAGGGGCGGGGGGAGAGGGGATCGGGGGAATTGGAGTGAT
GGCGGAGGTGCGGGTAGCGACGGAGACGGAGGTAACGATTACCGTGGAGC
GGATGGAGAGGAGGGCGAGGAGGGCGAGGAGGAGGAAGGAAACGAATCCG
ACTACCGATTCCTGCAAAAGAAGTCTGCTAAGAAAAGCAAAGGAGCCCTG
GGAGCGCCTTCTACCGCCACCAGCGGGGACCGCGAGGAGGGGCTCCAAGG
GGACACAGGGGCGGGGGGAGAGGGGATCGGGGGAATTGGAGTGATGGCGG
AGGTGCGGGTAGCGACGGAGACGGAGGTAACGATTACCGTGGAGCGGATG
GAGAGGAGGGCGAGGAGGGCGAGGAGGAGGAAGGAAACGAATCCGACTAC
CTTCGTTTCGGAACTATTTTTTTGTCGGCAGTTACGAAGACGACGAGGAA
GAAGAGGCGGCAGGAGGGGCGGCGGGAGCGGACGCCGCGCAGAAGGGGTC
AACGTGGTTGGACGAGCACTACAAAAAGAGGAACTGGCAGGTGTCTTCGT
TTCGGAACTATTTTTTTGTCGGCAGTTACGAAGACGACGAGGAAGAAGAG
GCGGCAGGAGGGGCGGCGGGAGCGGACGCCGCGCAGAAGGGGTCAACGTG
GTTGGACGAGCACTACAAAAAGAGGAACTGGCAGGTGTGAAAAGGCGTTG
CGAGAGGAGATGGCGGCGAACAAGGAGAGGGAGGCCAAGCAGAAGGAGGA
CGCCGGCAAGAAGGGGGTCAAGCCCAAGAAGGCGAGAAAAGGCGTTGCGA
GAGGAGATGGCGGCGAACAAGGAGAGGGAGGCCAAGCAGAAGGAGGACGC
CGGCAAGAAGGGGGTCAAGCCCAAGAAGGCGA
back to top