mRNA_P-lacustris_contig1036.379.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1036.379.1 vs. uniprot
Match: A0A6H5JM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM15_9PHAE) HSP 1 Score: 203 bits (516), Expect = 6.430e-60 Identity = 112/132 (84.85%), Postives = 118/132 (89.39%), Query Frame = 1 Query: 574 TGSTTARREVSEWLKAQTDDAGDG-VGRIEIDHVKEEERRIVLKEASRGQVFSITYQKEYPNSADEYLFLETDSKVADFVAVINDLRDFLYGQPTSLTLTCLLDQLKRFLQKKSAKKSKGALGA-PSTATSG 963
+GSTTARREVSEWLK+QT +AGDG VGRIEIDHVKEEERRIVLKEASR QVFSITYQKEYPNS DEYLFLETDSKVADFVAVINDLRD++YGQPTSLTLT LLDQLK KKSAKK GALGA PS+A G
Sbjct: 2 SGSTTARREVSEWLKSQTTEAGDGGVGRIEIDHVKEEERRIVLKEASRAQVFSITYQKEYPNSVDEYLFLETDSKVADFVAVINDLRDYVYGQPTSLTLTALLDQLK----KKSAKKGMGALGAAPSSAALG 129
BLAST of mRNA_P-lacustris_contig1036.379.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.620e-28 Identity = 83/132 (62.88%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 574 TGSTTARREVSEWLKAQTDDAGDG-VGRIEIDHVKEEERRIVLKEASRGQVFSITYQKEYPNSADEYLFLETDSKVADFVAVINDLRDFLYGQPTSLTLTCLLDQLKRFLQKKSAKKSKGALGA-PSTATSG 963
+GSTTARREVSEWLKAQT AGDG VGRIEIDHVKEEERRIVLKEAS GQVFSITYQKEYPNSADEYL RFLQKKSAKK KGALGA PS+A G
Sbjct: 2 SGSTTARREVSEWLKAQTVGAGDGGVGRIEIDHVKEEERRIVLKEASGGQVFSITYQKEYPNSADEYL---------------------------------------RFLQKKSAKKGKGALGATPSSAALG 94 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1036.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1036.379.1 >prot_P-lacustris_contig1036.379.1 ID=prot_P-lacustris_contig1036.379.1|Name=mRNA_P-lacustris_contig1036.379.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=272bp MSGSTGSTTARREVSEWLKAQTDDAGDGVGRIEIDHVKEEERRIVLKEASback to top mRNA from alignment at P-lacustris_contig1036:49710..59087- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1036.379.1 ID=mRNA_P-lacustris_contig1036.379.1|Name=mRNA_P-lacustris_contig1036.379.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9378bp|location=Sequence derived from alignment at P-lacustris_contig1036:49710..59087- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1036:49710..59087- >mRNA_P-lacustris_contig1036.379.1 ID=mRNA_P-lacustris_contig1036.379.1|Name=mRNA_P-lacustris_contig1036.379.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1632bp|location=Sequence derived from alignment at P-lacustris_contig1036:49710..59087- (Pleurocladia lacustris SAG_25_93)back to top |