mRNA_P-lacustris_contig1014.228.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI) HSP 1 Score: 313 bits (802), Expect = 4.380e-97 Identity = 203/281 (72.24%), Postives = 227/281 (80.78%), Query Frame = 2 Query: 224 VTEFASAE-TAVNLSKGDALEHPVTELEAVRSILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDVSDQPNAPAGK----MTTAEWIKSIFARGMVYTRLFDERLGVSQTAKSIAVKVQTQVERLXXXXXXXXXXXXXXXXXXXKVQEVNTTLKVTETATKWAKTAKESTDKALESNPRVAAGVQRAGDAFETVVRSVSGLAQQALGQPK----PSGPAAPAEVP 1039
+ EFA+ T + SKG LEHPVT+LEAVRSILVQGLPLLDQELTE+S+VQVFSAYGEISKLLLQT E SR+QRAVLVFA+ AGA +ALQANGRDILGANC+VSLASSMP L+DGLDRD+VSDQP A G +TTAEWIK IFA+GMVYTRLFDE+LGVS TAKSIA KVQTQV XXXXXXXXXXXXXXXXXXX ETA+KWA +AKESTDKALESNPRVAAGV +AGDA ++V+SVSGLA QA+GQP+ P P P+ VP
Sbjct: 1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVP 281
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.900e-25 Identity = 68/124 (54.84%), Postives = 92/124 (74.19%), Query Frame = 2 Query: 290 VTELEAVRSILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDV----SDQPNAPAGKMTTAEWIKSIF 649
VTE +A RS+LVQGLP+LD++ TE SLV+VFS YG +S+LLLQTI S++QRA++VFAE+AGA AALQ N RDILGA+C+V L+S++ ++ DR ++ + G TTAEWI+ IF
Sbjct: 447 VTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNIHWMGESESALSGGTPTTAEWIQLIF 570
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 2.370e-15 Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = -2 Query: 2082 DALHYADSRRCKERIREAHRREEKAAEAQRQLALQRKRDEAIRRREQELLDRIDLRSRARK 2264
DALHY DSRRCKERIREA RREE+AAEAQRQLALQ+KRD+ RRREQELLDR+DLR+RAR+
Sbjct: 452 DALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARARR 512
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: A0A7S1XND4_9STRA (Hypothetical protein (Fragment) n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XND4_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.730e-8 Identity = 31/68 (45.59%), Postives = 51/68 (75.00%), Query Frame = 2 Query: 314 SILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILG 517
S+LV+G+P+ +ELTE ++V +FS G++ +L++QT+ G SQRA++ + +AAGA AAL +G +LG
Sbjct: 53 SVLVEGIPVATRELTEDAVVTLFSTKGQLGRLIIQTVAGGASQRAIVSYTDAAGAAAALHLDGERVLG 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1014.228.1 >prot_P-lacustris_contig1014.228.1 ID=prot_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=292bp MTLTKAMSFDVVRFFCQPRVTEFASAETAVNLSKGDALEHPVTELEAVRSback to top mRNA from alignment at P-lacustris_contig1014:35051..42331+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1014.228.1 ID=mRNA_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7281bp|location=Sequence derived from alignment at P-lacustris_contig1014:35051..42331+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1014:35051..42331+ >mRNA_P-lacustris_contig1014.228.1 ID=mRNA_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1752bp|location=Sequence derived from alignment at P-lacustris_contig1014:35051..42331+ (Pleurocladia lacustris SAG_25_93)back to top |