mRNA_P-lacustris_contig1011.211.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1011.211.1
Unique NamemRNA_P-lacustris_contig1011.211.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 4.340e-66
Identity = 121/152 (79.61%), Postives = 136/152 (89.47%), Query Frame = 1 
Query:    1 MRGTSNKSVAILAVTASTGSLSLGYFLLRRFRRRLNQSRALRTGKVSRPDAASLSLGDYVRLTGTVAAGARVLRSPMKHVACVSYRVDVVRVVDSMTAKKQASVTGAWGVLGGLAAVVPRLCSFATRAQVDTEKWDTVYQPISSTGKPWKFF 456
            MRG SNKSVA+LAVTASTGSLSLGYFL+RRFRRRLNQS+ALR G+VSRPDAASL++GDYVR+ GTV+AGAR L+SPMK VACVSYRV+VVRVVDS TAKK+ASV G WGVLGG+A+VVP LCSFA  AQVDTEKWDTVYQ ISS G+  + F
Sbjct:    1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIF 152
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BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.350e-8
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  651 KVLAVGSRLIVLGEVGEDPEGAVGDVVLRKAAP 749
            +VLAVGSRLIVLGEVGEDPEGA GDVVLRKAAP
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAP 34
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLV1_ECTSI4.340e-6679.61RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5LN52_9PHAE8.350e-893.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1011contigP-lacustris_contig1011:31283..36147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial ubiquitin ligase activator of NFKB 1
Ec32 orthologEc-26_001140.1
Exons5
Model size2037
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.6729465-UTR-P-lacustris_contig1011:31282..323331622815281.6729465-UTR-P-lacustris_contig1011:31282..32333Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 31283..32333 -
1693493448.7112024-UTR-P-lacustris_contig1011:31282..323331693493448.7112024-UTR-P-lacustris_contig1011:31282..32333Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 31283..32333 -
1622815281.8818145-UTR-P-lacustris_contig1011:33387..334011622815281.8818145-UTR-P-lacustris_contig1011:33387..33401Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 33388..33401 -
1693493448.742558-UTR-P-lacustris_contig1011:33387..334011693493448.742558-UTR-P-lacustris_contig1011:33387..33401Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 33388..33401 -
1622815281.8934276-UTR-P-lacustris_contig1011:34336..344201622815281.8934276-UTR-P-lacustris_contig1011:34336..34420Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 34337..34420 -
1693493448.7563734-UTR-P-lacustris_contig1011:34336..344201693493448.7563734-UTR-P-lacustris_contig1011:34336..34420Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 34337..34420 -
1622815281.9047647-UTR-P-lacustris_contig1011:35379..355931622815281.9047647-UTR-P-lacustris_contig1011:35379..35593Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 35380..35593 -
1693493448.7679644-UTR-P-lacustris_contig1011:35379..355931693493448.7679644-UTR-P-lacustris_contig1011:35379..35593Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 35380..35593 -
1622815281.92121-UTR-P-lacustris_contig1011:36058..361471622815281.92121-UTR-P-lacustris_contig1011:36058..36147Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 36059..36147 -
1693493448.7777019-UTR-P-lacustris_contig1011:36058..361471693493448.7777019-UTR-P-lacustris_contig1011:36058..36147Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 36059..36147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.8569496-CDS-P-lacustris_contig1011:32333..326661622815281.8569496-CDS-P-lacustris_contig1011:32333..32666Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 32334..32666 -
1693493448.7248454-CDS-P-lacustris_contig1011:32333..326661693493448.7248454-CDS-P-lacustris_contig1011:32333..32666Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 32334..32666 -
1622815281.8696318-CDS-P-lacustris_contig1011:33135..333871622815281.8696318-CDS-P-lacustris_contig1011:33135..33387Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 33136..33387 -
1693493448.73431-CDS-P-lacustris_contig1011:33135..333871693493448.73431-CDS-P-lacustris_contig1011:33135..33387Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 33136..33387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1011.211.1prot_P-lacustris_contig1011.211.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1011 32334..33387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1011.211.1

>prot_P-lacustris_contig1011.211.1 ID=prot_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=195bp
MGHGVPAHQQYGETVEIFLDDHDSIASLEAVAQAGTGMRRPRVRVDLAGA
EFFAMEEVASEFEAEKPTGNSSSRTQLGYRTTEKVLAVGSRLIVLGEVGE
DPEGAVGDVVLRKAAPLASWTSRPRPSPGPSLLPSSLSRACCTYDKAYGP
LIHHRPLFLFYTPRRRKHRLRLRNVLLISTAEVCCCHRTKMLQP*
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mRNA from alignment at P-lacustris_contig1011:31283..36147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1011.211.1 ID=mRNA_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4865bp|location=Sequence derived from alignment at P-lacustris_contig1011:31283..36147- (Pleurocladia lacustris SAG_25_93)
ATGCGAGGGACCAGCAACAAGTCGGTCGCCATATTGGCGGTGACGGCCTC
CACAGGATCGCTTTCCCTGGGCTACTTTCTCTTGCGCAGGTGTGTGCGTG
ATGCCAAACTGCAGGAAAACACGCCGCATCATGCGGCCCAATCAACGTCA
CATATCTTATTAGTGAGAGACTTCGTCCACCCACTACTGCCGTACATGCT
GCATTGCTGTACCGTCCCCTTAGCGCTCTACAAGGGCCCTTGGTTCCATT
TCTCCCGTTATCTGAACGCTGTTCCATCGCACGTCTCTCTCTCTTTGCCG
TGTAGACTACTAATTTAGCATGCTGTGTCCCTTCTGTCAAGTACCGCAAC
ATCCGAGTCGGAGAGGTCTCAGAGTGATTACGAGCGATTCATCACCTGTT
TTCCTGTGCCCTGTTCACCACTACGAGACGGAGTGCCTTTTGAGCCCCTC
GGTGATCAGCCAACAACGCGTAGCCAACAACCAACGACACGCCCAAAATG
AAACATGTTCTCTCTGATCTCTCCTCTTCCCCAAACCTCGGTGCTGCCAA
CAAGATTTCGGCGAAGGCTTAATCAGAGCAGGGCGCTCCGAACCGGAAAG
GTTTCTCGACCAGATGCAGCCAGCCTCTCGCTGGGCGACTACGTCCGCCT
GACAGGCACCGTCGCCGCCGGAGCACGCGTTTTACGGAGCCCGATGAAGC
ACGTCGCTTGCGTGTCCTATCGTGTGGACGTTGTGAGGGTGGTGGACTCG
ATGACGGCAAAGAAGCAGGTGTGGCGGTTGGCCTCCAAACCCCGGTCGTC
TGGTGGAGTATACTCCTACGTTGGGTGTGAGTGATGCGGGTAGCATGTTT
TGTGCGTGTGCGCGTGCCTCCGCCCTCCGCCCCCCCGCGCGCCGAAACAC
CCCTTTCCCTTGGTATGTTTTTACTCTCGGATGCAAGTCAAAGGTGCTCG
AGGCTACGGCTGGAGTGTCGCAAGCCACCGTGCTCGGTGCATTTTGATCA
CGTCTTGAGCGAGTGGTTTTTCCTGTTGGCATTGCGGCAGAGAGGATTTT
CATGCTTGGCTGCCGTAGTTTGTGGTGCCGCACTTATGGAGACACAGAGT
GTGGTCACGTGCGTTGTCTCGGCGTGTGTGCTCGCTCATCATCTGCATGC
AACTCTCACCCTTTTTTCCTCGAGGCTCATCTCTCCCCGCATCGCCCAAC
TTTTCCTCAGGGCTTGTTTTGTTTTTCTTATCAAAGCAAATACAAAATTA
TCTCCATGTGTGGATCCAAGATAAATTAGCAATGGATTCATAGTGGTGTG
TGATCCTGACACAACATACACAATGACATGATAACTACTCTGTGGATACC
AGGCTTCACGGTAATTTAAAGTGGTTACCTTGAGCATCGGATTGTAGTCA
CGGGTATCTTTGAAGGTTTCTTGAAGGTTTCCGTGTGTGGGATTGAGTTT
GGTAGCGTCACGTGCACTATGGTGTTTGTAATCCCCGAGATATGCGTGTG
GGCTGGCCAGCGTAGCGTTTCTGTATTCTCTAGTGACCAGTGTGGTATAA
AATATGCATACGTGTTTCTTTCGGTACCCAATCGGCTCAACCACTTGGTA
CGCACCGCCGCCCACACAGTTGTATGTGCGTCTTGCTCGACACCAAAATC
AACAACGAGTGAGTGCCTTTGATTTTTGATCGAAACCGGAAAAAAGCGTC
GCTGTGCTGGTGGTACTACTGACGTAGGCATCGGTGACGGGCGCTTGGGG
AGTGCTGGGAGGACTGGCGGCTGTTGTCCCTAGGCTTTGCTCCTTCGCTA
CAAGGGCACAGGTGAGAGGCGGCGTATGTGACGCCCTGTGTAGCGATCCG
TGTCGGCCACGACCAATGAAAGCCAGACACTATCGTGCCTGTGCCGACCT
TGAATCACACCTTGTTTGAGGTAGTAGAGCACTCCTCTTCACAATTTTTG
AAGGAAATAAGCGAGATAGGGAATTCACAGCGAAAAAAGGTCTTAGCAAC
GGTCGAACTGCCAACTTCAAGTATCCAGCCATAGCCTTGGCATGCAAATG
CTGTTGGCCCAAGCACTGTGGCAAGTACGGCCGCTGGGTTGGTCAACAAA
CTCCCCTCGACTTGTGCTCGCCGGGCCGAACCGAACCTTGAATTTTTCAT
GCAGCCCCGCCCGTGCCGTGCTCTGATCCCACCACCCACCTGCCCGGAGC
GAGCGAGCCCCTAACGTTGTGCGCTGTTTTCGTCCGCACCAATTGGTGGT
GTTTTGGCTCATAGATTTTGGTCCCAGCGCCCCCCCGAGTGGGGGTGCCC
TTCCGTTCTTCACTGGGTTGGGGGCTTCTGAAATTTCGTCAGCGCCAGTG
GAGCCGTATATGTGGGATGTTGACAGGTAGCTCGACCAAGGCTGTCAACC
TAGTCAACTCCTTTCATTGGACCGTCCTGCTCCTCCTCCGACTCCTGCTG
CTCTTATCGTTTGTCTGCGTAAAGTCATCTCCGACGTGTCACCCACGTGG
GCACAAACCTCGTACTCTAATAATAAACCACACCAGAAAAGTCCATCCTA
AAAAAAAGTCCATCCTCTCATCACCCCGCGACCCTCGGAACAGTACGCCC
CTCTAAACATATCGAGTAAACTATATAAAAGTAAAAAATGATTGCGAGGG
GATACGCTGCGGCTCGACAGCAGTAGGTTTTGTCGATTTGTCTCAACAAG
GACCTAACGATCTCTTATACGGGAACATGTATAACACGCGGGTCAGGTCG
ACACGGAGAAATGGGACACGGTGTACCAGCCCATCAGCAGTACGGGGAAA
CCGTGGAAATTTTTCTGGACGACCACGACTCCATCGCAAGCCTGGAGGCG
GTGGCGCAAGCGGGCACTGGGATGAGACGCCCCCGGGTCCGGGTCGACCT
CGCCGGGGCAGAGTTTTTCGCAATGGAAGAAGTGGCATCGGAGTTCGAGG
CGGAAAAGCCCACCGGAAATTCTTCCTCCAGGACCCAGCTGGGATACAGA
ACTACGGAGAAGGTGTGCTGTGTCGTGGCTTTTGGTCGACCTACCGTAGA
CTGTAGGCGTTGTTTTTTCACGTGGCGGAAGCAGTGCCCAGGAAGAACGC
AAGGCTTGTAGACTTCGGCGCAAGCACTCTTCGCGACATGTTTTCAATTG
GAGGTGTTCCGGACTGCGACATACCCCTTCTGAGACCATGCAGCAGGCAG
GGGTTACGCCGCCTTGTAGGCTGACAACCACGCATGTTTGTTTCCTGTCA
CGTGGCCGCGATGGGGTTCCCGCCGGCCCACTCGAGATACGCCTGTTCTT
CGATAGATCGAGGAAACCAGCGGCAACTATGGCGTCTTTGTATCAGGTGT
TTCAGTTGGTACTCGAGATAGCGACGCTCCTCTTCCAGTCACGCGAACAC
GCCAGATATATATCGTATGTATGTACGACTAGCTGCTTTCACTTCAATTC
CAGAAATGACAACCATTCGCTTTGCACGCAGGTGCTGGCTGTGGGTTCGC
GACTGATCGTCCTTGGCGAGGTGGGCGAAGACCCCGAGGGTGCAGTCGGC
GACGTCGTGCTGCGGAAGGCCGCCCCTCTAGCATCCTGGACCTCAAGACC
ACGTCCATCTCCAGGCCCTTCGCTGCTTCCATCAAGTCTGAGCAGGGCTT
GCTGCACGTATGATAAGGCTTATGGCCCCCTTATTCATCACAGACCTCTT
TTTTTGTTTTACACTCCACGGAGACGAAAGCACCGTCTTCGTCTTCGGAA
TGTTTTATTGATTTCGACGGCTGAAGTCTGCTGCTGCCATCGAACAAAAA
TGCTCCAGCCATAAAAATACTGCTGTCGAGCCAAGGCGAGCATCTCTGCG
GCCGTAGCCCTGCTCCGCGTGTGTTACCCGACCAGCACTTTGCCAGGGGG
TGCACAACTAAACGAGCTTTACCTCAGAGTATACAGTACATTTTCCTCAG
CCTATTCCCCGTACTGGACATTGGTATCTACGTATGTGGGGCGACTGAGA
CTAATGATTTTTCATGGCGGCCTCATCCTCATCTTAGCTCCGGCGGGCGT
AACAGTGCGCTTGGCGGGCGAGCGGTTGTTTCTCGACGTCGCGTTTTGTA
ACCGCATTCTGCTTTTTGAAGTGAAGTCCTTTTACGGAGTATTTGTTTAG
GCGACGGCGACGTGTCGTTTTCGGACGACGACCCGTTTTAATCGTTTTAA
TTATGACAACAATGAACTTTTTGTGAATGAAAAGACATTCCGTAACATGT
AGAGAGTTCCTCAGAGATTCTTGAGTTTGCCTGCCAAAATTTTGGATCGC
AACTACAGCCGGAGCTGTTGAGGAATAACTGCACACCCCAGTGTGTTTTT
GGGCGCGAGGGGCTCCGTACTTATCAATTGTTGGGTACAAAAAAACGTGT
TTTTTGCTGCTAGTTGTAGGGAATGACCCATTAAGCGTATTTTTTTCAGA
ATTCATGCGTTTTTTTTCGGGGACGCATATGCGCACATGGGTCAATTATG
CTAGGTCGTTATGCGTTTTTTTTCCAGTTATGCGCCAGCTTATGCTCGGC
ATTTTCAGGCCTTTTCTGTGGCATTTGTGCTGATTTTGATGATTTTTGCT
CCTCCAACGTGTCGTGTCGAGTTATTATGCACCATACACCCGATCCTGCC
GTGGTTAGCTGGCCGTTGGTATACTGTACACTTCATGCACAAATATTTTT
CATGCACATATTTTTGAATTATTTCAAGTATAGTTTGGTAAGCCGCACTT
CGATATGAAGATGGTGAAGGTCGTATGCATGTACCGCACCCTCCACCCTC
CCTCCCCCAAGACGGAGACTCTCGCCCATCCCCTGATTCCTTCTACCTTG
AACACGCAAATCCAA
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Coding sequence (CDS) from alignment at P-lacustris_contig1011:31283..36147-

>mRNA_P-lacustris_contig1011.211.1 ID=mRNA_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1170bp|location=Sequence derived from alignment at P-lacustris_contig1011:31283..36147- (Pleurocladia lacustris SAG_25_93)
ATGGGACACGGTGTACCAGCCCATCAGCAGTACGGGGAAACCGTGGAAAT
TTTTCTGGACGACCACGACTCCATCGCAAGCCTGGAGGCGGTGGCGCAAG
CGGGCACTGGGATGAGACGCCCCCGGGTCCGGGTCGACCTCGCCGGGGCA
GAGTTTTTCGCAATGGAAGAAGTGGCATCGGAGTTCGAGGCGGAAAAGCC
CACCGGAAATTCTTCCTCCAGGACCCAGCTGGGATACAGAACTACGGAGA
AGATGGGACACGGTGTACCAGCCCATCAGCAGTACGGGGAAACCGTGGAA
ATTTTTCTGGACGACCACGACTCCATCGCAAGCCTGGAGGCGGTGGCGCA
AGCGGGCACTGGGATGAGACGCCCCCGGGTCCGGGTCGACCTCGCCGGGG
CAGAGTTTTTCGCAATGGAAGAAGTGGCATCGGAGTTCGAGGCGGAAAAG
CCCACCGGAAATTCTTCCTCCAGGACCCAGCTGGGATACAGAACTACGGA
GAAGGTGCTGGCTGTGGGTTCGCGACTGATCGTCCTTGGCGAGGTGGGCG
AAGACCCCGAGGGTGCAGTCGGCGACGTCGTGCTGCGGAAGGCCGCCCCT
CTAGCATCCTGGACCTCAAGACCACGTCCATCTCCAGGCCCTTCGCTGCT
TCCATCAAGTCTGAGCAGGGCTTGCTGCACGTATGATAAGGCTTATGGCC
CCCTTATTCATCACAGACCTCTTTTTTTGTTTTACACTCCACGGAGACGA
AAGCACCGTCTTCGTCTTCGGAATGTTTTATTGATTTCGACGGCTGAAGT
CTGCTGCTGCCATCGAACAAAAATGCTCCAGCCATAAGTGCTGGCTGTGG
GTTCGCGACTGATCGTCCTTGGCGAGGTGGGCGAAGACCCCGAGGGTGCA
GTCGGCGACGTCGTGCTGCGGAAGGCCGCCCCTCTAGCATCCTGGACCTC
AAGACCACGTCCATCTCCAGGCCCTTCGCTGCTTCCATCAAGTCTGAGCA
GGGCTTGCTGCACGTATGATAAGGCTTATGGCCCCCTTATTCATCACAGA
CCTCTTTTTTTGTTTTACACTCCACGGAGACGAAAGCACCGTCTTCGTCT
TCGGAATGTTTTATTGATTTCGACGGCTGAAGTCTGCTGCTGCCATCGAA
CAAAAATGCTCCAGCCATAA
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