prot_P-lacustris_contig1011.211.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1011.211.1
Unique Nameprot_P-lacustris_contig1011.211.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length195
Homology
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BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.820e-53
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 0 
Query:   12 GETVEIFLDDHDSIASLEAVAQAGTGMRRPRVRVDLAGAEFFAMEEVASEFEAEKPTGNSSSRTQLGYRTTEKVLAVGSRLIVLGEVGEDPEGAVGDVVLRKAAP 116
            GETV+IFLDDHDSIA LEAVAQAGTG RRPRVRVDLAGAEFF+ME+VASEFEAEK TG  SSRTQLGYRTTE+VLAVGSRLIVLGEVGEDPEGA GDVVLRKAAP
Sbjct:  146 GETVQIFLDDHDSIADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAP 250
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BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.510e-9
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 
Query:   84 KVLAVGSRLIVLGEVGEDPEGAVGDVVLRKAAP 116
            +VLAVGSRLIVLGEVGEDPEGA GDVVLRKAAP
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAP 34
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLV1_ECTSI2.820e-5390.48RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5LN52_9PHAE6.510e-993.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022170E3 Ubiquitin ligase, GIDE-typePFAMPF12483GIDEcoord: 13..106
e-value: 2.3E-8
score: 33.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1011contigP-lacustris_contig1011:32334..33387 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1011.211.1mRNA_P-lacustris_contig1011.211.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1011 31283..36147 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1011.211.1 ID=prot_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=195bp
MGHGVPAHQQYGETVEIFLDDHDSIASLEAVAQAGTGMRRPRVRVDLAGA
EFFAMEEVASEFEAEKPTGNSSSRTQLGYRTTEKVLAVGSRLIVLGEVGE
DPEGAVGDVVLRKAAPLASWTSRPRPSPGPSLLPSSLSRACCTYDKAYGP
LIHHRPLFLFYTPRRRKHRLRLRNVLLISTAEVCCCHRTKMLQP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022170GIDE