mRNA_P-lacustris_contig1011.211.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI) HSP 1 Score: 230 bits (587), Expect = 4.340e-66 Identity = 121/152 (79.61%), Postives = 136/152 (89.47%), Query Frame = 1 Query: 1 MRGTSNKSVAILAVTASTGSLSLGYFLLRRFRRRLNQSRALRTGKVSRPDAASLSLGDYVRLTGTVAAGARVLRSPMKHVACVSYRVDVVRVVDSMTAKKQASVTGAWGVLGGLAAVVPRLCSFATRAQVDTEKWDTVYQPISSTGKPWKFF 456
MRG SNKSVA+LAVTASTGSLSLGYFL+RRFRRRLNQS+ALR G+VSRPDAASL++GDYVR+ GTV+AGAR L+SPMK VACVSYRV+VVRVVDS TAKK+ASV G WGVLGG+A+VVP LCSFA AQVDTEKWDTVYQ ISS G+ + F
Sbjct: 1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIF 152
BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 8.350e-8 Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 3 Query: 651 KVLAVGSRLIVLGEVGEDPEGAVGDVVLRKAAP 749
+VLAVGSRLIVLGEVGEDPEGA GDVVLRKAAP
Sbjct: 2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAP 34 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1011.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1011.211.1 >prot_P-lacustris_contig1011.211.1 ID=prot_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=195bp MGHGVPAHQQYGETVEIFLDDHDSIASLEAVAQAGTGMRRPRVRVDLAGAback to top mRNA from alignment at P-lacustris_contig1011:31283..36147- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1011.211.1 ID=mRNA_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4865bp|location=Sequence derived from alignment at P-lacustris_contig1011:31283..36147- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1011:31283..36147- >mRNA_P-lacustris_contig1011.211.1 ID=mRNA_P-lacustris_contig1011.211.1|Name=mRNA_P-lacustris_contig1011.211.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1170bp|location=Sequence derived from alignment at P-lacustris_contig1011:31283..36147- (Pleurocladia lacustris SAG_25_93)back to top |