mRNA_P-lacustris_contig1010.207.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-lacustris_contig1010.207.1
Unique Name	mRNA_P-lacustris_contig1010.207.1
Type	mRNA
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)

Homology

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: D7FZW6_ECTSI (Complex I intermediate-associated protein 30, mitochondrial (NADH dehydrogenase [ubiquinon) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW6_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 1.360e-162
Identity = 231/296 (78.04%), Postives = 253/296 (85.47%), Query Frame = 1

Query:   52 MTSVARTYRKYWPTDAVLKGKVALQDLMIFSFSTKDLLAGWDVTTDQRWGGKSTATVSWKPWERLSGAAGSTGSASATAGEAADDDASGLDVQPWRPLKGAASMAAPRGVMQSEGLPTGDEEDTAPPLAKGGFLCFSGELTTEKAASAKFGGFCGTRSTRRKEPLEIPEGYRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLRTPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWISLVQHADGDTDNNGGVVPRRKPLPPKNGVMSW 939
            M  VARTYRKYWPTDAVLKG   L+DLM+ SFSTKDLLAGWDVTTDQ WGGKSTATVSWKPWERL G   + GSASATA +AA   A  LDVQPWR  +G  + AAPRGV+QSEGLP GDEE+TAPPL KGGF CFSGEL+TE+AA AK GGFCGTRSTRR+EPL +P+GYRGVEMRIRTDGR+YEVNFEP SGIINDLYQGY+RTP GQW+TVSLPLNRLLLTGQGQIRDIQRKWD GMELKSIGFTIADGVGGPFRLD+AW++LV   D D   + G  PR+KPLPP +GVMSW
Sbjct:    1 MARVARTYRKYWPTDAVLKGTAVLEDLMLCSFSTKDLLAGWDVTTDQSWGGKSTATVSWKPWERLGG---TDGSASATAADAAAGGACALDVQPWRLFEGTPATAAPRGVLQSEGLPAGDEENTAPPLEKGGFFCFSGELSTERAARAKVGGFCGTRSTRRQEPLVLPDGYRGVEMRIRTDGRQYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDVGMELKSIGFTIADGVGGPFRLDVAWVALVSEVD-DEGKDDGDAPRKKPLPPTDGVMSW 292

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: A0A6H5KSW2_9PHAE (CIA30 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.990e-57
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 1

Query:  601 RYEVNFEPHSGIINDLYQGYLRTPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWISLVQHADGDTDNNGGVVPRRKPLPPKNGVMSW 939
            RYEVNFEP SGIINDLYQGY+RTP GQW+TVSLPLNRLLLTGQGQIRDIQRKWD GMEL SIGFTIADGVGGPFRLD+AW++LV   D   D+  G  PR+KPLPPK+GVMSW
Sbjct:   29 RYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDMGMELNSIGFTIADGVGGPFRLDVAWVALVSEVDEGKDD--GDAPRKKPLPPKDGVMSW 139

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: W7U321_9STRA (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U321_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.150e-19
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1

Query:  457 FSGELTTEKAAS---AKFGGFCGTRSTRRKEPLEIP-----EGYRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLR-TPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWISLV 852
            FSG L+  + A+    K  G+C  +       +E+P     EGY G+E+ +RTDGR Y  N E  S   ++LYQGY+   P GQW T+ LP   + LT  G++  IQ++ D+   L+SIGF IADG  GPF L+IA ++ V
Sbjct:   87 FSGNLSNMRPAADPTVKRTGYCALK-------VEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAV 220

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: A0A1V9YVR5_9STRA (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVR5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.160e-13
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  445 GFLCFSGELTTEKAASAKF---GGFCGTRSTRRKEPLEIPE-----GYRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLRTPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWISLVQHAD 864
            G   FSG L+     + ++    G+C  R         +P+     GY+G+ MRI+TDGR Y +N +  S   +DLY G+L+ P  +W    L  +  +LT +G ++       N   L++IG  +AD   GPF + I WI  +++ D
Sbjct:  498 GAAVFSGNLSLSIQPTEQYVVRSGYCAIRGN-------VPQNLHLHGYKGLAMRIKTDGRTYRINAQADSWNPHDLYMGFLKAPANEWVEAELAFSDFILTSRGYVQMNDPTKLNPASLRTIGIALADDNEGPFSMAIEWIKAIENVD 638

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: A0A0L0DSY5_THETB (NADH dehydrogenase 1 alpha subcomplex n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSY5_THETB)

HSP 1 Score: 77.4 bits (189), Expect = 1.460e-12
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1

Query:  451 LCFSGELTTEKAASAKFGGFCGTRSTRRKEPLEIP--EGYRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLRT----PPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWISLVQHADGDTD 876
            + F GEL+T  A      GF   R+        +P  E Y   E+  R DGR Y+ N    S + +DL+Q  L T        W+ V +P + L++T +G ++  Q K D+   + S+GFT+ADGV GPF L I  I  ++ AD D D
Sbjct:   73 VVFKGELSTTPAPGYDRSGFASFRTV---PGTTVPSLEYYDAFEIVCRGDGRPYQFNVGCESVVPDDLHQAALPTHEASAAADWAVVRIPFDALIMTWRGFVQVEQLKLDS-RRITSLGFTLADGVDGPFELAIRDIRAIRMADADAD 216

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: A0A5A8C5V0_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5V0_CAFRO)

HSP 1 Score: 76.6 bits (187), Expect = 4.650e-12
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1

Query:  502 GGFCGTRSTRRKEPLEIPE---GYRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLRTPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDI 834
            GGFC  R   RK   E  E      GV++R++TDGR + +NF+       D++Q  +RT P +W T++LP +      +G +R++Q   +   ++   G T+ADG  GPFR ++
Sbjct:   78 GGFCNVRLRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEV 190

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: A0A5A8E3B7_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3B7_CAFRO)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-11
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1

Query:  502 GGFCGTRSTRRKEPLEIPE---GYRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLRTPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDI 834
            GGFC  R   RK   E  E      GV++R++TDGR + +NF+       D++Q  +RT P +W T++LP +      +G +R++Q   +   ++   G T+ADG  GPFR ++
Sbjct:  107 GGFCNVRLRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEV 219

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: A0A139GY44_9PEZI (CIA30 domain-containing protein n=4 Tax=Pseudocercospora TaxID=131324 RepID=A0A139GY44_9PEZI)

HSP 1 Score: 75.1 bits (183), Expect = 2.210e-11
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 1

Query:  562 YRGVEMRIRTDGRRYEVNFEPHSGIINDLYQGYLRT-PPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIA 837
            Y  + +RIR+DGR+Y VNF+  S +  DL+Q  L +  PGQW TV++PL   + T  GQ+ + QR+  +  +++S+G ++ D V GPF L IA
Sbjct:  148 YSFLALRIRSDGRKYFVNFQTESIVPTDLHQHLLPSCTPGQWETVTIPLGAFVRTNYGQVAEPQREMMS-TKVRSVGISLIDRVPGPFELAIA 239

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: L7MD23_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MD23_RHIPC)

HSP 1 Score: 73.9 bits (180), Expect = 8.830e-11
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 1

Query:  457 FSGELTTEKAASAKF--GGFCGTRSTRRKEPLEIPEGY-----RGVEMRIRTDGRRYEVNF--EPHSGII-NDLYQGYLRTPPGQ-WSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWI 843
            FSG L T      K    G+C  RS R + P  +P  Y       +E+RIR DGR Y +N   + +  +  N LYQ  L T  G  W    +P ++ L+  +G+++D Q   D    +K +G T+ADG+ GPFRL++ +I
Sbjct:  171 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYI 309

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BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Match: L7MEY0_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MEY0_RHIPC)

HSP 1 Score: 73.9 bits (180), Expect = 1.110e-10
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 1

Query:  457 FSGELTTEKAASAKF--GGFCGTRSTRRKEPLEIPEGY-----RGVEMRIRTDGRRYEVNF--EPHSGII-NDLYQGYLRTPPGQ-WSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIADGVGGPFRLDIAWI 843
            FSG L T      K    G+C  RS R + P  +P  Y       +E+RIR DGR Y +N   + +  +  N LYQ  L T  G  W    +P ++ L+  +G+++D Q   D    +K +G T+ADG+ GPFRL++ +I
Sbjct:  202 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYI 340

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1010.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7FZW6_ECTSI	1.360e-162	78.04	Complex I intermediate-associated protein 30, mito...	[more]
A0A6H5KSW2_9PHAE	5.990e-57	80.53	CIA30 domain-containing protein n=1 Tax=Ectocarpus...	[more]
W7U321_9STRA	1.150e-19	41.13	NADH:ubiquinone oxidoreductase intermediate-associ...	[more]
A0A1V9YVR5_9STRA	1.160e-13	31.08	Queuine tRNA-ribosyltransferase catalytic subunit ...	[more]
A0A0L0DSY5_THETB	1.460e-12	35.14	NADH dehydrogenase 1 alpha subcomplex n=1 Tax=Thec...	[more]
A0A5A8C5V0_CAFRO	4.650e-12	34.21	CIA30 domain-containing protein n=2 Tax=Cafeteria ...	[more]
A0A5A8E3B7_CAFRO	1.280e-11	34.21	CIA30 domain-containing protein n=2 Tax=Cafeteria ...	[more]
A0A139GY44_9PEZI	2.210e-11	41.94	CIA30 domain-containing protein n=4 Tax=Pseudocerc...	[more]
L7MD23_RHIPC	8.830e-11	35.00	CIA30 domain-containing protein (Fragment) n=1 Tax...	[more]
L7MEY0_RHIPC	1.110e-10	35.00	CIA30 domain-containing protein (Fragment) n=1 Tax...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	474.2
Seed ortholog evalue	4.6e-131
Seed eggNOG ortholog	2880.D7FZW6
Preferred name	NDUFAF1
KEGG ko	ko:K18159
KEGG Pathway	ko04714,map04714
Hectar predicted targeting category	other localisation
GOs	GO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005829,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0036293,GO:0036296,GO:0042594,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050896,GO:0051082,GO:0055086,GO:0055093,GO:0055114,GO:0065003,GO:0070469,GO:0070482,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.	mitochondrial respiratory chain complex I assembly
EggNOG OGs	KOG2435@1,KOG2435@2759
Ec32 ortholog description	Complex I intermediate-associated protein 30, mitochondrial precursor (NADH dehydrogenase [ubiquinon])
Ec32 ortholog	Ec-22_003820.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03029
Exons	6
Model size	1375
Cds size	891
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1010.207.1	prot_P-lacustris_contig1010.207.1	Pleurocladia lacustris SAG_25_93	polypeptide	P-lacustris_contig1010 50643..55744 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815281.1575673-UTR-P-lacustris_contig1010:50209..50642	1622815281.1575673-UTR-P-lacustris_contig1010:50209..50642	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1010 50210..50642 -
1693493448.2890325-UTR-P-lacustris_contig1010:50209..50642	1693493448.2890325-UTR-P-lacustris_contig1010:50209..50642	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1010 50210..50642 -
1622815281.2416596-UTR-P-lacustris_contig1010:55744..55795	1622815281.2416596-UTR-P-lacustris_contig1010:55744..55795	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1010 55745..55795 -
1693493448.389759-UTR-P-lacustris_contig1010:55744..55795	1693493448.389759-UTR-P-lacustris_contig1010:55744..55795	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1010 55745..55795 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815281.1759667-CDS-P-lacustris_contig1010:50642..50726	1622815281.1759667-CDS-P-lacustris_contig1010:50642..50726	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 50643..50726 -
1693493448.301071-CDS-P-lacustris_contig1010:50642..50726	1693493448.301071-CDS-P-lacustris_contig1010:50642..50726	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 50643..50726 -
1622815281.1862776-CDS-P-lacustris_contig1010:51601..51857	1622815281.1862776-CDS-P-lacustris_contig1010:51601..51857	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 51602..51857 -
1693493448.3101664-CDS-P-lacustris_contig1010:51601..51857	1693493448.3101664-CDS-P-lacustris_contig1010:51601..51857	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 51602..51857 -
1622815281.1954846-CDS-P-lacustris_contig1010:53620..53730	1622815281.1954846-CDS-P-lacustris_contig1010:53620..53730	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 53621..53730 -
1693493448.3336108-CDS-P-lacustris_contig1010:53620..53730	1693493448.3336108-CDS-P-lacustris_contig1010:53620..53730	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 53621..53730 -
1622815281.2069929-CDS-P-lacustris_contig1010:53991..54120	1622815281.2069929-CDS-P-lacustris_contig1010:53991..54120	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 53992..54120 -
1693493448.353066-CDS-P-lacustris_contig1010:53991..54120	1693493448.353066-CDS-P-lacustris_contig1010:53991..54120	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 53992..54120 -
1622815281.2171943-CDS-P-lacustris_contig1010:54555..54712	1622815281.2171943-CDS-P-lacustris_contig1010:54555..54712	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 54556..54712 -
1693493448.3639374-CDS-P-lacustris_contig1010:54555..54712	1693493448.3639374-CDS-P-lacustris_contig1010:54555..54712	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 54556..54712 -
1622815281.229164-CDS-P-lacustris_contig1010:55589..55744	1622815281.229164-CDS-P-lacustris_contig1010:55589..55744	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 55590..55744 -
1693493448.374916-CDS-P-lacustris_contig1010:55589..55744	1693493448.374916-CDS-P-lacustris_contig1010:55589..55744	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1010 55590..55744 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-lacustris_contig1010:50210..55795-
coding sequence from alignment at P-lacustris_contig1010:50210..55795-

protein sequence of mRNA_P-lacustris_contig1010.207.1

>prot_P-lacustris_contig1010.207.1 ID=prot_P-lacustris_contig1010.207.1|Name=mRNA_P-lacustris_contig1010.207.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=297bp
MTSVARTYRKYWPTDAVLKGKVALQDLMIFSFSTKDLLAGWDVTTDQRWG
GKSTATVSWKPWERLSGAAGSTGSASATAGEAADDDASGLDVQPWRPLKG
AASMAAPRGVMQSEGLPTGDEEDTAPPLAKGGFLCFSGELTTEKAASAKF
GGFCGTRSTRRKEPLEIPEGYRGVEMRIRTDGRRYEVNFEPHSGIINDLY
QGYLRTPPGQWSTVSLPLNRLLLTGQGQIRDIQRKWDNGMELKSIGFTIA
DGVGGPFRLDIAWISLVQHADGDTDNNGGVVPRRKPLPPKNGVMSW*

mRNA from alignment at P-lacustris_contig1010:50210..55795-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-lacustris_contig1010.207.1 ID=mRNA_P-lacustris_contig1010.207.1|Name=mRNA_P-lacustris_contig1010.207.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5586bp|location=Sequence derived from alignment at P-lacustris_contig1010:50210..55795- (Pleurocladia lacustris SAG_25_93)
ATCGTCCACATCTTTGGCTCTCGCCTTCCGCACACGCTTGGTTTAAGAAA
CATGACGAGTGTAGCAAGGACGTACAGGAAGTACTGGCCCACGGATGCCG
TGCTCAAGGGAAAAGTGGCGCTGCAGGACCTGATGATTTTCTCATTCTCC
ACCAAGGACCTCCTGGCGGGGTGGGATGTAACCACCGACCAGCGCTGGGG
CGGCAAGTGAGCGCTTAACGCGCGGTCCCAGACGTGACATGCACGCGGTG
ACAGCGAATAGAAAATGTTGGTTTAGTGCCCACTATGTAACATTCATGCA
CAGCTCGGGGACAGCAGTTGCGTGATCTGCGGAACGATTCGCGATATTCC
ATTCCAGGGTGCAAAAATGAAAACAGCAGTAGCAGCGACAAACCTTTTGC
TGTGGCAAGCCAAACCTTGGCCTTTGGGCTGCCGTCTCTTTCGTTGGAAG
GCTGTTGACGTGATCTGTACGGGGGTTCGAATCCCACCGTGGTACGGCCG
TGGGCTTTTTTCCGAAAATAAATGAGAAAAAATGAGCCGTCATCATGTCA
GCGCGGCGAGGGGCAGAGAAGGCTGCCTCGGAGATTCACTGGTGATGGCG
GTGAGATGGGATTCGTACCCCCACACTATATCTCTCGTTAGGTGGCACAA
ATTACCAATTGTGCTACTAGTCAGCGCTGACTAGTGGCACAATTTGGAAT
TTGTGCTACTTAAAGAAGGCGTTTCTTTCATCTCTCTCTGTAGTCGGCAA
AGCCGTCAGCGCGTTACATGTCCAATACGATTTGCCACCACATGCGGGAA
CAATGTTGCCAGGAACGAAGGTAATAAGTACCTTCGTCACCCCCGTGAGG
ATTTGTGTGTGCGTCCGTGGAATGCGCTGTGACACAGCAGTGAACAGTGG
TCGTTCGTACGGATGCGCTGCCTTACTCCGTTGTCTTCAAAATGCAGTAG
TCAGGCCCAACCTACGTTGCTTGAAGCAGCAGTGAACACCAGTGCCTACT
CCACACCATGAAACCGCCATTGGGTTGTCCATACGTACACCTGCAATGCA
TTCGATGGTGGGGTTTGTTTAACGCCCTGACAGGTCTACAGCCACCGTAT
CATGGAAGCCCTGGGAACGACTGAGTGGGGCCGCTGGGTCTACTGGGTCT
GCTTCCGCCACTGCTGGCGAGGCCGCTGATGATGACGCTAGTGGTTTAGA
CGTACAGCCATGGAGGCCGTTGAAAGGAGCAGCTTCGATGGTGTGTTGGC
GGGTGTATGAATCCCGTCGTTTCATCTTTACCCCGCCCTCAGGCACGCAT
GGGTTGTGTTGGCGCCTTCATTTTTTTATTAGGTTGATACATGAGCTCCA
TCGTGAATCCGTCCGGACTCATTGTTGTCAGCCGATCTGACCCTGCGTAC
GAACGAATACGATCCTCAACATGCGACCGCGGGTCGGGACAACACCGGGG
CTTGTGTGAAGCATGACAAGTCTCACATGCCGGTCTAGTGAGAAATTCCT
GCTTCTCCAGTAGTGCTCGCCGCTGGGCAGGCATGCTTTGCTCATCAACA
CCGCGCATGGCTGGGGTTTAGTGTTATGTCGACTGTCTTGCTCAAGGGGT
TGGACGTGATTTGCAGCCGGCGTGTAGAGCATATGGATTTTGTCCAACGT
ATTTCAGTGTTCCCGTTTGTCGCAGGCGGCCCCACGAGGCGTGATGCAGT
CGGAGGGTCTGCCGACAGGGGATGAGGAGGACACAGCCCCTCCCTTGGCG
AAGGGGGGATTTTTATGCTTTTCAGGAGAGCTCACCACCGAGAAAGCTGC
ATCGGTAGGCTTGAAAGGGTCAGAGTCTGGCAAGGATTCGGTTTCAAGGA
TAGAGCGGGAAGTTAACCGTTCGTGCTTGTGATGTGTTGCTGGCAGTCCC
AAGAGCTGCCCCTGTCGCTCCTCCTGCTGCTGCGATTCTTCAAGGTCGCC
TTAGCTGTTGCCGTTTGTTCGTTGACTTGTTAACTTTCCTATCAGAAACC
CGTTTTCTTTTTTCGTGTTATGTGGTATGTTTCCATCGGCCTGTGGTCGG
TCCGTCCCGCACCAGGCTAAGTTTGGTGGGTTTTGCGGAACAAGGTCGAC
TCGGCGCAAAGAGCCTCTTGAAATACCAGAAGGCTACCGTGGAGTGGAAA
TGCGAATACGAACGGATGGGCGCCGGTCAGTGCTGTTTTTTCATGTCTGC
TTCTTGACGCTGCTGTTGATTGGTCGCATGTTTTTCGCGTCACACGTATA
TCCGATTTCCTCCAACCCGCGGTCGCAGTTGAAGGCTTTTCTTGGCACCG
CGGTTGCAGCCACTTGCGCACAGGGAGGGAAACATTCGAAGTGTAGATTA
TTGAGACCCAAGGGATAGTCACCATGTGGGAAATGGCACGACGATACGAG
TGGCATTGCCGACCCGTGGTTACCGTTTTTTTTGTTTGTTTCTTCACATT
AAAAACCGTTCCGGTCTCTCCACCCCAGTACCCCTAAATGTCCGTACTGA
TCCAACACTTGACGCGGTCGATTCCCGTGGTCACAGGCTAACTTACCCCC
AAAAGAGGGTACACAAATAAAAGTGGACCCGAGATGTCTGCAGAGCAATA
GATTACAAACTTAGAAAACAGATAATATGTTGGAACCCTCCGTTCCCCTC
TACACGCTATGTGAGGCAAAAACAAAAACAAAATTAATAGCGGAATTCAA
CACACCAGTCTGGATATTCTCATATCTCTGACTCTATCTTGTATCCCTAC
AGCAGTGCCGAGGTTTTCCGTGCTGGGTTCTCGCCGGCTATGCAAAGAAA
TCAGGCCCCCAGCCGATTTAGTCCAGAAACAACCAGAAGAGAATCATCAA
TAGACCTCCGGTAGGTAGACATAAATAAACGGGCTATTTCAGACACCCAA
ATGAACAAACAAACAAAGCCACAGCGATACGCACGAGGTGCAGTGCTGTG
GGTGGGGGAGGTTAGCCACAAAAATAAAAATAAATCAATCCGGTACATAT
CGCGCTACTCGTTCTGTCTCTTCTCGCTTGCTTTCCTCCCTCGCCGTTAT
GTCCGTCTGTTGCCCCTTTCCCGCCCCCTGGTTGGTGCCATCTCTAAACT
ACTTCTAGCCTCATTGTCCCTCTTGACCTGCCGTTGCCGGCTGGCCTCCT
CTTCCTCCTTGTGCCATGCTGTCATGAACCTCTCAGCTCCCTGCAGTACC
CCCGTATACCATGGCCTGCCCCCTACCGTACGTGCCATATATTCCAGGCT
TTCGGCCCATTTTGGAATATCCCTGTTCATACCTGATATTTCACGTCGCA
TCGACGCGTGTCATGCGCTACCCCTGCATGGTGTGAATTCGATAAATCAT
ATGTGGAAGCTTTGCAAACATTCTGTGCTAGGGGTTAAGGGTGGTGGTAG
TTCTGCTTTGAGTAACTGAAAAACGGTGGTATGCCGAGGAGGACGACGAC
GAGCACCGCTAGAGTATCACCGTCAGCCTGTGTCTTCGCAAACAAACCGG
AGAAGCAGGAACGTTTTCATGATGCACCCCAATCAATATTTTTCAAAATC
CAAGTAGGTGGCAATTCGAGCGGCAACCGGGCATCCCGAATCACCTCTCC
GGCACTAACAAATACTTACCGCGGACAAATATCGCGTCGAAAGTGAAGTA
ATGATCCTTGAACAAGTCTCCGCAACATTGCATGTTGTGCAAGCCTCCCT
TTGTTTCCCCCCCGCAGGCACGAAGTCATTTTCTCGCGAAATTTCGAGCT
GCAACAGGGGACCGAATCCATTGCCGTCGATACCATGCTCGTTGTCTGGC
CTATTGAAAAAACATCGCCAGTAAATATGCACGCGTATGTTTCGAGGTGA
AAATGGGTTTGTGTTTGACGAAACGAAGACGGCGCGATCTATCGGAACCG
AAACTTAGCATCATGGCATACCCCTTGCACCCCATCAGATATGAGGTGAA
CTTCGAGCCGCATTCGGGCATCATCAACGACCTCTACCAGGGATACCTGC
GGACCCCCCCGGGCCAATGGTCGACCGTTTCACTCCCCCTGAACCGCCTT
CTTCTGACGGGGCAGGGCCAGATCCGCGACATCCAAAGGAAGTGGGACAA
TGGAATGGAGCTAAAGTCGATCGGGTTCACCATCGCGGACGGCGTCGGCG
GGCCGTTCCGACTGGACATCGCGTGGATTTCGCTGGTGCAACACGTGAGA
ACCGTCGAGGATGGCGGAGTATGTCCTTCCCATCCAAAGAGTTGCTTTTG
CGGGGTGGGACTGGCGAGGATCGCGTTCACAATCATCGAAAAGGGGCCGG
CGAGCCATTCGGATTGGGTGTTGCTCATGGGTATGATAGATGCGAGTGGT
TGTTCCACACTTTGTTGTGATGGAGATGTGGCGGGATGGGGAGTAATGGG
TTGTGCTTGTCTTGCAGGCTAGGATGCACTATCGCTGTTTCGGTTGGGAT
CGCCTTGCTCTTTGAGATCGGAATCGGAATCAAGCAGTCAACACGTAAAC
AAATCTGCTGTGGCCTTTTATTTGCAGTTTTCCCGTCTATGACAATTCTG
TGTTAAATTGTTACTCGAACATAGATCGCTGATCTCCTTCGTATTAGACC
CTACGCCAAATGAGGTTTGCTTTAGCAGCACAGAATTGCAAAGGTCTGTT
TTTTGGGCTGTGCTCTCCTCGTTTTCGTCATCGCGAGTTTCGGGATTGAC
GCCGTATTCTGGTTGGCAGTTCGTGGTTTGGCTTGGGCTAATCATCGCTC
GCTCTTGGTCCTTATCGTTGAACTCTGTTTCTTTTTCCCTCAATTGATTG
CTTTTGATTTTTGGGTGTTTCCTCGGCTTTTATTTTACCCTTTCTGTCTT
GGTCCAATTCACGTACTCTTTACGGCTGTTGCTGCGCTCCTGCCTTGGTC
CATCCGCCGACGCTTTCCCGGAATTTTTCAACAATAGTTCAGCTCGAGTT
TCGTTTTAGAGTGGCCTGTTTCCTCCATTTCACGTCCCAGGTTGTCCTTG
CGTAGTTTTGTTCATCTTGCGTTCCCCCCTTTTTTGTTTTTGCTTTTTTT
TCACCGCCAACGCTGTCAGGCGGATGGAGACACGGACAACAACGGCGGGG
TCGTGCCTAGGAGAAAACCACTTCCGCCCAAGAATGGAGTCATGTCGTGG
TAAAATATTCCGGTCCAAGGTAAATCCATGTCAGCAGGACGCACGGTCGT
ACATGGCGGACCCTTGAGAGCACCTTTAAGCATCGAGGGAGTTTCAAGGA
CGGCCTGCCGCTGGTTGAGCCGTAGCCGCGTGATTCGCGGGGCAACAAGT
GCTGCATAATCTTGCCTTGAGGGCCACACACTCGATTGTGAACTTGAGGA
ATCACTCCTCAGGGAGAGCGAATGTGGAACCTTTTTGTTTGGCGGAAGCG
ACGGCAACCACATACCACCGAGGTAAAATCTGGTTTCGTGTGACCACGAA
TCAGAGTCACGGTGTGACCTGAATCGGAGCCGCAGTCAGAAACTAGGCCA
AAAGCGCACGACGACGGGTAGGTAGGGTAGGAGCTGTAATCTGGCCTTAT
CTATGGTGGGGGAGAAACAGCAACTTGGTTCGTTGG

Coding sequence (CDS) from alignment at P-lacustris_contig1010:50210..55795-

>mRNA_P-lacustris_contig1010.207.1 ID=mRNA_P-lacustris_contig1010.207.1|Name=mRNA_P-lacustris_contig1010.207.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1782bp|location=Sequence derived from alignment at P-lacustris_contig1010:50210..55795- (Pleurocladia lacustris SAG_25_93)
ATGACGAGTGTAGCAAGGACGTACAGGAAGTACTGGCCCACGGATGCCGT
GCTCAAGGGAAAAGTGGCGCTGCAGGACCTGATGATTTTCTCATTCTCCA
CCAAGGACCTCCTGGCGGGGTGGGATGTAACCACCGACCAGCGCTGGGGC
GGCAAATGACGAGTGTAGCAAGGACGTACAGGAAGTACTGGCCCACGGAT
GCCGTGCTCAAGGGAAAAGTGGCGCTGCAGGACCTGATGATTTTCTCATT
CTCCACCAAGGACCTCCTGGCGGGGTGGGATGTAACCACCGACCAGCGCT
GGGGCGGCAAGTCTACAGCCACCGTATCATGGAAGCCCTGGGAACGACTG
AGTGGGGCCGCTGGGTCTACTGGGTCTGCTTCCGCCACTGCTGGCGAGGC
CGCTGATGATGACGCTAGTGGTTTAGACGTACAGCCATGGAGGCCGTTGA
AAGGAGCAGCTTCGATGGTCTACAGCCACCGTATCATGGAAGCCCTGGGA
ACGACTGAGTGGGGCCGCTGGGTCTACTGGGTCTGCTTCCGCCACTGCTG
GCGAGGCCGCTGATGATGACGCTAGTGGTTTAGACGTACAGCCATGGAGG
CCGTTGAAAGGAGCAGCTTCGATGGCGGCCCCACGAGGCGTGATGCAGTC
GGAGGGTCTGCCGACAGGGGATGAGGAGGACACAGCCCCTCCCTTGGCGA
AGGGGGGATTTTTATGCTTTTCAGGAGAGCTCACCACCGAGAAAGCTGCA
TCGGCGGCCCCACGAGGCGTGATGCAGTCGGAGGGTCTGCCGACAGGGGA
TGAGGAGGACACAGCCCCTCCCTTGGCGAAGGGGGGATTTTTATGCTTTT
CAGGAGAGCTCACCACCGAGAAAGCTGCATCGGCTAAGTTTGGTGGGTTT
TGCGGAACAAGGTCGACTCGGCGCAAAGAGCCTCTTGAAATACCAGAAGG
CTACCGTGGAGTGGAAATGCGAATACGAACGGATGGGCGCCGGCTAAGTT
TGGTGGGTTTTGCGGAACAAGGTCGACTCGGCGCAAAGAGCCTCTTGAAA
TACCAGAAGGCTACCGTGGAGTGGAAATGCGAATACGAACGGATGGGCGC
CGATATGAGGTGAACTTCGAGCCGCATTCGGGCATCATCAACGACCTCTA
CCAGGGATACCTGCGGACCCCCCCGGGCCAATGGTCGACCGTTTCACTCC
CCCTGAACCGCCTTCTTCTGACGGGGCAGGGCCAGATCCGCGACATCCAA
AGGAAGTGGGACAATGGAATGGAGCTAAAGTCGATCGGGTTCACCATCGC
GGACGGCGTCGGCGGGCCGTTCCGACTGGACATCGCGTGGATTTCGCTGG
TGCAACACATATGAGGTGAACTTCGAGCCGCATTCGGGCATCATCAACGA
CCTCTACCAGGGATACCTGCGGACCCCCCCGGGCCAATGGTCGACCGTTT
CACTCCCCCTGAACCGCCTTCTTCTGACGGGGCAGGGCCAGATCCGCGAC
ATCCAAAGGAAGTGGGACAATGGAATGGAGCTAAAGTCGATCGGGTTCAC
CATCGCGGACGGCGTCGGCGGGCCGTTCCGACTGGACATCGCGTGGATTT
CGCTGGTGCAACACGCGGATGGAGACACGGACAACAACGGCGGGGTCGTG
CCTAGGAGAAAACCACTTCCGCCCAAGAATGGAGTCATGTCGTGGTAAGC
GGATGGAGACACGGACAACAACGGCGGGGTCGTGCCTAGGAGAAAACCAC
TTCCGCCCAAGAATGGAGTCATGTCGTGGTAA