mRNA_P-lacustris_contig101.187.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.187.1
Unique NamemRNA_P-lacustris_contig101.187.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 5.380e-45
Identity = 104/197 (52.79%), Postives = 125/197 (63.45%), Query Frame = 2
Query:  650 PASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV---ISNKGEDAVMCS*ARKLEGPFVRGA 1231
            P  +S   VQ   DVT+ P+P+E+  DNL+ALIA REGR LLDVKGL+PVCWNV+IGDLVHN A+GV IGA FLTCS TI                 +        G   +       L    AVLGTI+ILSL  TLSD D++IVLL+G+GS IFIAL++LLPEAL+V   +S KG  A+MCS   KL G FV GA
Sbjct:  137 PGGNSPQAVQIQADVTQPPSPAESSTDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILSLGDTLSDKDVSIVLLLGSGSFIFIALSELLPEALAVTHAVSEKGAVAMMCSQLLKL-GSFVLGA 332          
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 6.510e-41
Identity = 100/197 (50.76%), Postives = 123/197 (62.44%), Query Frame = 2
Query:  650 PASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV---ISNKGEDAVMCS*ARKLEGPFVRGA 1231
            P  +S   VQ   DVT+ P+P+E+  DNL+ALIA R GR LLDVKGL+PVCWNV+IGDLVHN A+G+ IGA FLTCS T+                 +        G   +       L    AVLGTI+IL+L  TLSD D++IVLL+G+GS IFIAL++LLPEAL V   +S KG  AVMCS   KL G F+ GA
Sbjct:  335 PGGNSPHAVQIQADVTQPPSPAESSTDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILALGDTLSDKDVSIVLLLGSGSFIFIALSELLPEALVVTHAVSEKGAVAVMCSQLLKL-GSFLLGA 530          
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 9.350e-34
Identity = 90/184 (48.91%), Postives = 115/184 (62.50%), Query Frame = 2
Query:  689 DVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV---ISNKGEDAVMCS*ARKLEGPFVRGA 1231
            + T  P+P E+++DNLQALI++R+G+ LLDVKGL PVCWNVI GDLVHN A+GVAIGA FL+CS T+                 +        G           L    AVLGT++IL+L+ TLS+ DIAIVLLVGAGS IFIAL +LLP AL+V   ++ +G  A+  S   KL G F+ GA
Sbjct:  310 EATLPPSPVESNSDNLQALISARKGKSLLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSLMQAFVYNFLSALSAVLGTVIILALQDTLSEKDIAIVLLVGAGSFIFIALCELLPGALAVAALVAKRGGGAIARSQVLKL-GSFLLGA 492          
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 9.070e-26
Identity = 74/166 (44.58%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  743 LIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSVI---SNKGEDAVMCS*ARKLEGPFVRGA 1231
            L  + + R L D+KGL+PVCWNVI G+LVHN A+GV IGA FLTC  ++                 +        G   +       L     VLG +VILSL + LSDAD++++LL+G+GS IFIALT+LLP AL V    S+K   AVMC+  +KL G FV GA
Sbjct:  190 LALTDKERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSLKQAFLFNFLSALTCVLGAVVILSLRSQLSDADVSVILLLGSGSFIFIALTELLPGALEVTKAESDKAGGAVMCNQMKKL-GSFVLGA 354          
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.530e-20
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 2
Query:  620 CTKAAKRMARPASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV-ISNKG-EDAVMCS*ARKLEGPFVRGA 1231
            CT        PA++   VV+     +R PT +    DNL  L+  R+GR L D KGL+P+CWNVI+GD VH+   G  IGA FL+C  T+                 +        G   +  +   L+    A+LG ++IL+L    ++  IAI+LL+GAGS IFI LT+LLPEALS+ +  KG  D++     RKL G F  GA
Sbjct:  292 CTAGHSHTGAPATAK--VVEADGGQSRGPT-TPTIPDNLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLVSGIPAILGAVLILALGDQFTNFQIAIILLLGAGSFIFIGLTELLPEALSLTMDGKGLGDSI-----RKL-GSFAFGA 488          
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.100e-18
Identity = 60/149 (40.27%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  728 DNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALS-VISNKG 1171
            +NL  L+  R+GR L D KGL+P+CWNVI+GD VH+   G  IGA FL+C  T+                 +        G   +  +   L     A+LG ++IL L    +   IAI+LL+GAGS IFI LT+LLPEALS  +  KG
Sbjct:  321 ENLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLASGIPAILGAVLILGLGDQFTTFQIAIILLLGAGSFIFIGLTELLPEALSSTVDGKG 469          
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: A0A6H5K199_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K199_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-15
Identity = 63/170 (37.06%), Postives = 82/170 (48.24%), Query Frame = 2
Query:  731 NLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSVI---SNKGEDAVMCS*ARKLEGPFVRGA 1231
            NL AL++ R+GR L D+KGL+ VCWNVI G+LV N A+G                                                R   L  P  VLG +VI+SL + LSDAD+ + +L+G+GS IFIA T LLP  L V    S +   AV C+  +KL G F+ GA
Sbjct:  123 NLWALVSERQGRSLFDLKGLQLVCWNVIAGELVRNFADGA----------------------------------------------FRFNFLSAPTCVLGAVVIISLRSKLSDADVWVTILLGSGSFIFIAPTGLLPGVLEVTKVESGRAGGAVTCNQVKKL-GSFLHGA 245          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FLV2_ECTSI5.380e-4552.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L662_9PHAE6.510e-4150.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW4_ECTSI9.350e-3448.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNP7_ECTSI9.070e-2644.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRW4_ECTSI5.530e-2037.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN39_9PHAE1.100e-1840.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K199_9PHAE1.170e-1537.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:105870..107494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog2880.D7FLV2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular zinc ion homeostasis
EggNOG OGsCOG0428@1,KOG2693@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1314
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.187.1prot_P-lacustris_contig101.187.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 106510..106707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.9005349-UTR-P-lacustris_contig101:105869..1065091622815277.9005349-UTR-P-lacustris_contig101:105869..106509Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 105870..106509 +
1693493445.9660947-UTR-P-lacustris_contig101:105869..1065091693493445.9660947-UTR-P-lacustris_contig101:105869..106509Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 105870..106509 +
1622815277.922724-UTR-P-lacustris_contig101:106707..1068551622815277.922724-UTR-P-lacustris_contig101:106707..106855Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 106708..106855 +
1693493445.9978118-UTR-P-lacustris_contig101:106707..1068551693493445.9978118-UTR-P-lacustris_contig101:106707..106855Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 106708..106855 +
1622815277.9343998-UTR-P-lacustris_contig101:107166..1074941622815277.9343998-UTR-P-lacustris_contig101:107166..107494Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 107167..107494 +
1693493446.0095294-UTR-P-lacustris_contig101:107166..1074941693493446.0095294-UTR-P-lacustris_contig101:107166..107494Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 107167..107494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.9116063-CDS-P-lacustris_contig101:106509..1067071622815277.9116063-CDS-P-lacustris_contig101:106509..106707Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 106510..106707 +
1693493445.9782608-CDS-P-lacustris_contig101:106509..1067071693493445.9782608-CDS-P-lacustris_contig101:106509..106707Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 106510..106707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.187.1

>prot_P-lacustris_contig101.187.1 ID=prot_P-lacustris_contig101.187.1|Name=mRNA_P-lacustris_contig101.187.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=66bp
MARPASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGL
RPVCWNVIIGDLVHN*
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mRNA from alignment at P-lacustris_contig101:105870..107494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.187.1 ID=mRNA_P-lacustris_contig101.187.1|Name=mRNA_P-lacustris_contig101.187.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1625bp|location=Sequence derived from alignment at P-lacustris_contig101:105870..107494+ (Pleurocladia lacustris SAG_25_93)
AGAAGATGGTTTGGCATGGTTGCGAAGGTGAATGGACCCTCTTAGGTAGG CGGACACTTTCTTCATCTTGTCGTTGGTCACTCGTGTCCTCGATGACATC CCCTCCCCTACCGACGGAAATCGACTAGCTGTGTAGATGGTACTCACGAA GCGACGAGCACGTGTCTTTTGCCAACCCCCAGGGAGTAGGCGTGCCCCCC AAGATCACCCATCCCGATCCCTTCCTGCTTTCTAAACATTTTTCTGTCTT CCTTCGCCACAGATTCGCGAGACTCTTTGTAGTCGTCAACAAGCGCGTGG CGAACAAAATCGGCCTTTCTCACGCCTTTGTCTTTGCCTCTGGCGCGCTT CTCACGGCCTCCTTCCTACACCTCATCCCCGAAGCGCTCGAGGGCCTCGA GTCCAAGTACGACAGCTCCCTCACCCGCGCGCTGTACGCTATAGCCTCTA CGTCGTGGGCGGAATATCCATCACATCGCCATCCACGCCCTCCTGAGGTC GTACCACTCGCATTCCCCCAGCAAACCCCACCGCCACGAAACGGGGGTCG TGGCAGCGGATGGAGGAGGCTGCTGCGGCGCCACCGTCGCGGGAGACGCT GACCTGATGCCGATGTCGATGCACGAAGGCGGCAAAGCGAATGGCCAGGC CGGCAAGCTCGTCGCACGCGGTGGTCCAGAACATGGAAGACGTTACAAGA CAGCCGACCCCGTCCGAGGCTGATGCGGACAATCTCCAAGCGCTGATCGC CTCGAGGGAAGGGAGGCCGCTGCTGGACGTTAAGGGGCTCCGGCCGGTTT GCTGGAACGTCATCATCGGTGACTTGGTGCACAACTGAGCCAACGGAGTT GCGATCGGGGCGACGTTCCTCACCTGTAGCAAGACCATTAGGCTGGACCG TCACGGCGTCCGCGGTTCTCCACGTTATTCCCCACGAGATAGCCGACTTC ATGGCGCTACCCAACGGGGGCACGAGTCTCGAGCAGGTGCGCTGTTGCTG TCGTGTGTCTTGTGGGTTGGCTGCAAGGGCACTTGATGTAGTTTGGTGGA TGGATTGATTCTTGGGTGTTTGAGTAGCTTTCGTTTGGCTCTTGGCTTTC GATCAACCGGCTTGGTTGGTGCAGCCGCCGCCGCCGCCGCCGCCGCCACA GACCCATACGTCCCATAATTCGAAAAAAAGCTTCACCACTATTTACGAAG TCTTAACGAGTCGTTGCCCCGATAGCGTACCTAGTATGTATGCTAAAGAC TCCTTGCCGCTGCCGCCGCCAACGCCACACTGTTTGATGTGGCGCAGGCG TTCGCCTACAACTTCTTGTCTGCCCCGTCGCCGTGCTCGGCACTATTGTC ATCCTGTCCCTGGAAACCACGCTCAGCGACGCGGACATTGCGATCGTGCT CCTGGTGGGCGCGGGTTCCTTAATCTTTATCGCCCTCACCGACCTGTTAC CTGAGGCCCTCAGCGTCATCAGCAACAAGGGCGAGGACGCCGTGATGTGC TCCTAGGCGCGCAAGTTAGAGGGTCCTTTTGTTAGGGGCGCTCCTGATTG GCATACCCCTCATCTTCGACGAGCACTGCGACGTCGGCGGTGACGGGCAT GGCCACTAAGGGCCCAATCCTCACG
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Coding sequence (CDS) from alignment at P-lacustris_contig101:105870..107494+

>mRNA_P-lacustris_contig101.187.1 ID=mRNA_P-lacustris_contig101.187.1|Name=mRNA_P-lacustris_contig101.187.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=396bp|location=Sequence derived from alignment at P-lacustris_contig101:105870..107494+ (Pleurocladia lacustris SAG_25_93)
ATGGCCAGGCCGGCAAGCTCGTCGCACGCGGTGGTCCAGAACATGGAAGA
CGTTACAAGACAGCCGACCCCGTCCGAGGCTGATGCGGACAATCTCCAAG
CGCTGATCGCCTCGAGGGAAGGGAGGCCGCTGCTGGACGTTAAGGGGCTC
CGGCCGGTTTGCTGGAACGTCATCATCGGTGACTTGGTGCACAACTGAAT
GGCCAGGCCGGCAAGCTCGTCGCACGCGGTGGTCCAGAACATGGAAGACG
TTACAAGACAGCCGACCCCGTCCGAGGCTGATGCGGACAATCTCCAAGCG
CTGATCGCCTCGAGGGAAGGGAGGCCGCTGCTGGACGTTAAGGGGCTCCG
GCCGGTTTGCTGGAACGTCATCATCGGTGACTTGGTGCACAACTGA
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