mRNA_P-lacustris_contig101.187.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI) HSP 1 Score: 169 bits (428), Expect = 5.380e-45 Identity = 104/197 (52.79%), Postives = 125/197 (63.45%), Query Frame = 2
Query: 650 PASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV---ISNKGEDAVMCS*ARKLEGPFVRGA 1231
P +S VQ DVT+ P+P+E+ DNL+ALIA REGR LLDVKGL+PVCWNV+IGDLVHN A+GV IGA FLTCS TI + G + L AVLGTI+ILSL TLSD D++IVLL+G+GS IFIAL++LLPEAL+V +S KG A+MCS KL G FV GA
Sbjct: 137 PGGNSPQAVQIQADVTQPPSPAESSTDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILSLGDTLSDKDVSIVLLLGSGSFIFIALSELLPEALAVTHAVSEKGAVAMMCSQLLKL-GSFVLGA 332
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE) HSP 1 Score: 162 bits (411), Expect = 6.510e-41 Identity = 100/197 (50.76%), Postives = 123/197 (62.44%), Query Frame = 2
Query: 650 PASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV---ISNKGEDAVMCS*ARKLEGPFVRGA 1231
P +S VQ DVT+ P+P+E+ DNL+ALIA R GR LLDVKGL+PVCWNV+IGDLVHN A+G+ IGA FLTCS T+ + G + L AVLGTI+IL+L TLSD D++IVLL+G+GS IFIAL++LLPEAL V +S KG AVMCS KL G F+ GA
Sbjct: 335 PGGNSPHAVQIQADVTQPPSPAESSTDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILALGDTLSDKDVSIVLLLGSGSFIFIALSELLPEALVVTHAVSEKGAVAVMCSQLLKL-GSFLLGA 530
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI) HSP 1 Score: 142 bits (358), Expect = 9.350e-34 Identity = 90/184 (48.91%), Postives = 115/184 (62.50%), Query Frame = 2
Query: 689 DVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV---ISNKGEDAVMCS*ARKLEGPFVRGA 1231
+ T P+P E+++DNLQALI++R+G+ LLDVKGL PVCWNVI GDLVHN A+GVAIGA FL+CS T+ + G L AVLGT++IL+L+ TLS+ DIAIVLLVGAGS IFIAL +LLP AL+V ++ +G A+ S KL G F+ GA
Sbjct: 310 EATLPPSPVESNSDNLQALISARKGKSLLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSLMQAFVYNFLSALSAVLGTVIILALQDTLSEKDIAIVLLVGAGSFIFIALCELLPGALAVAALVAKRGGGAIARSQVLKL-GSFLLGA 492
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI) HSP 1 Score: 117 bits (294), Expect = 9.070e-26 Identity = 74/166 (44.58%), Postives = 96/166 (57.83%), Query Frame = 2
Query: 743 LIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSVI---SNKGEDAVMCS*ARKLEGPFVRGA 1231
L + + R L D+KGL+PVCWNVI G+LVHN A+GV IGA FLTC ++ + G + L VLG +VILSL + LSDAD++++LL+G+GS IFIALT+LLP AL V S+K AVMC+ +KL G FV GA
Sbjct: 190 LALTDKERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSLKQAFLFNFLSALTCVLGAVVILSLRSQLSDADVSVILLLGSGSFIFIALTELLPGALEVTKAESDKAGGAVMCNQMKKL-GSFVLGA 354
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI) HSP 1 Score: 102 bits (255), Expect = 5.530e-20 Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 2
Query: 620 CTKAAKRMARPASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSV-ISNKG-EDAVMCS*ARKLEGPFVRGA 1231
CT PA++ VV+ +R PT + DNL L+ R+GR L D KGL+P+CWNVI+GD VH+ G IGA FL+C T+ + G + + L+ A+LG ++IL+L ++ IAI+LL+GAGS IFI LT+LLPEALS+ + KG D++ RKL G F GA
Sbjct: 292 CTAGHSHTGAPATAK--VVEADGGQSRGPT-TPTIPDNLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLVSGIPAILGAVLILALGDQFTNFQIAIILLLGAGSFIFIGLTELLPEALSLTMDGKGLGDSI-----RKL-GSFAFGA 488
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.100e-18 Identity = 60/149 (40.27%), Postives = 80/149 (53.69%), Query Frame = 2
Query: 728 DNLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALS-VISNKG 1171
+NL L+ R+GR L D KGL+P+CWNVI+GD VH+ G IGA FL+C T+ + G + + L A+LG ++IL L + IAI+LL+GAGS IFI LT+LLPEALS + KG
Sbjct: 321 ENLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLASGIPAILGAVLILGLGDQFTTFQIAIILLLGAGSFIFIGLTELLPEALSSTVDGKG 469
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Match: A0A6H5K199_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K199_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.170e-15 Identity = 63/170 (37.06%), Postives = 82/170 (48.24%), Query Frame = 2
Query: 731 NLQALIASREGRPLLDVKGLRPVCWNVIIGDLVHN*ANGVAIGATFLTCSKTIRLDRHGVRGSPRYSPRDSRLHGATQRGHESRAGVRLQLLVCPVAVLGTIVILSLETTLSDADIAIVLLVGAGSLIFIALTDLLPEALSVI---SNKGEDAVMCS*ARKLEGPFVRGA 1231
NL AL++ R+GR L D+KGL+ VCWNVI G+LV N A+G R L P VLG +VI+SL + LSDAD+ + +L+G+GS IFIA T LLP L V S + AV C+ +KL G F+ GA
Sbjct: 123 NLWALVSERQGRSLFDLKGLQLVCWNVIAGELVRNFADGA----------------------------------------------FRFNFLSAPTCVLGAVVIISLRSKLSDADVWVTILLGSGSFIFIAPTGLLPGVLEVTKVESGRAGGAVTCNQVKKL-GSFLHGA 245 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig101.187.1 >prot_P-lacustris_contig101.187.1 ID=prot_P-lacustris_contig101.187.1|Name=mRNA_P-lacustris_contig101.187.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=66bp MARPASSSHAVVQNMEDVTRQPTPSEADADNLQALIASREGRPLLDVKGLback to top mRNA from alignment at P-lacustris_contig101:105870..107494+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig101.187.1 ID=mRNA_P-lacustris_contig101.187.1|Name=mRNA_P-lacustris_contig101.187.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1625bp|location=Sequence derived from alignment at P-lacustris_contig101:105870..107494+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig101:105870..107494+ >mRNA_P-lacustris_contig101.187.1 ID=mRNA_P-lacustris_contig101.187.1|Name=mRNA_P-lacustris_contig101.187.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=396bp|location=Sequence derived from alignment at P-lacustris_contig101:105870..107494+ (Pleurocladia lacustris SAG_25_93)back to top |