mRNA_P-lacustris_contig1009.175.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-lacustris_contig1009.175.1
Unique Name	mRNA_P-lacustris_contig1009.175.1
Type	mRNA
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)

Homology

[Close]

BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 5.700e-70
Identity = 123/152 (80.92%), Postives = 127/152 (83.55%), Query Frame = 1

Query:    1 MDGDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGAPR 456
            M+ DKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGV    Q    Q     LRRAV TNAAW   VQSLA+GVLKQ RALDGLIDVLPGAELREDQQ+E  IARLDREG+LKR ELAKMVEKAE L K VNGSLDQLADHMLGAPR
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME-EIARLDREGKLKRTELAKMVEKAEALSKGVNGSLDQLADHMLGAPR 171

[Close]

BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.810e-8
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 1

Query:   10 DKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGAPR 456
            D+D VS MQ+ VDQLAL+MF+S+R +P        A    V+   +  QQQ             W   V +L+  V+ + RALD +I+ LPG +  E QQL+  +  L  E      +L     +A       +  LD L+  +L AP+
Sbjct:   21 DQDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQH---------GQQWIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQLQ-ELKELGEESAALALQLRGRTAEAAAAADAADKVLDHLSSTLLVAPQ 159

[Close]

BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: K3X2M6_GLOUD (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)

HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 1

Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHML 444
            D VS +QESVD++ALSMF++LRL+P S   +G       A                          ++SLA  VL+  +  D LID LPG E  E +QLE  +  L  +   +   L ++ E+AE  + R   SL  +++  L
Sbjct:   33 DKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEETAAA--------------------------IRSLANDVLRMVKETDALIDDLPGLEKTESEQLE-ELRHLQIQSEEEAQTLRQVAEEAERWMDRARDSLRVISETRL 148

[Close]

BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: A0A5D6YEG9_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.010e-6
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 1

Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHML 444
            D VS +QESVD++ALSMF++LRL+P           VG             S  RA    A     ++SLA+ VL+  +  D LID LPG +  E  QLE  + RL  E   +   L ++ ++AE  + R   SL  +++  L
Sbjct:   26 DKVSLLQESVDKMALSMFNALRLLP-----------VG-------------SGDRAETATA-----IRSLADDVLRMVKETDALIDDLPGLDKTESDQLE-ELRRLQIESEEEAQTLRQVADEAERWMDRARDSLRVISETRL 138

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FV36_ECTSI	5.700e-70	80.92	Mediator of RNA polymerase II transcription subuni...	[more]
A0A835Z332_9STRA	3.810e-8	32.21	Mediator of RNA polymerase II transcription subuni...	[more]
K3X2M6_GLOUD	2.330e-7	32.17	Mediator of RNA polymerase II transcription subuni...	[more]
A0A5D6YEG9_9STRA	2.010e-6	34.27	Mediator of RNA polymerase II transcription subuni...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig1009	contig	P-lacustris_contig1009:52058..56488 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Mediator complex, subunit Med21
Ec32 ortholog	Ec-12_005030.1
Exons	2
Model size	459
Cds size	459
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815276.0197797-CDS-P-lacustris_contig1009:52057..52378	1622815276.0197797-CDS-P-lacustris_contig1009:52057..52378	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1009 52058..52378 +
1693493444.471949-CDS-P-lacustris_contig1009:52057..52378	1693493444.471949-CDS-P-lacustris_contig1009:52057..52378	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1009 52058..52378 +
1622815276.030657-CDS-P-lacustris_contig1009:56350..56488	1622815276.030657-CDS-P-lacustris_contig1009:56350..56488	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1009 56351..56488 +
1693493444.4844968-CDS-P-lacustris_contig1009:56350..56488	1693493444.4844968-CDS-P-lacustris_contig1009:56350..56488	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1009 56351..56488 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1009.175.1	prot_P-lacustris_contig1009.175.1	Pleurocladia lacustris SAG_25_93	polypeptide	P-lacustris_contig1009 52058..56488 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-lacustris_contig1009:52058..56488+
coding sequence from alignment at P-lacustris_contig1009:52058..56488+

protein sequence of mRNA_P-lacustris_contig1009.175.1

>prot_P-lacustris_contig1009.175.1 ID=prot_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=153bp
MDGDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNM
HQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELRE
DQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGA
PR*

mRNA from alignment at P-lacustris_contig1009:52058..56488+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-lacustris_contig1009.175.1 ID=mRNA_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4431bp|location=Sequence derived from alignment at P-lacustris_contig1009:52058..56488+ (Pleurocladia lacustris SAG_25_93)
ATGGACGGCGATAAGGATGCCGTTTCTGCCATGCAAGAGTCCGTGGATCA
GCTGGCTCTCAGCATGTTCGATTCTCTTCGATTAATCCCCTTTTCAGAGG
AGGTCAAGGGAGGCGCAAGGGGCGTCGGTGTCGCTCCTCAACACAACATG
CACCAGCAACAACAGCCGTCGTTGCGACGAGCGGTTGCGACAAACGCTGC
TTGGGATAGCCAGGTGCAGTCGCTGGCGGAGGGTGTGCTGAAGCAGGGAA
GAGCCTTGGATGGCCTCATCGATGTGCTGCCAGGAGCAGAGCTTCGCGAA
GACCAGCAACTGGAGGCAAGTGTCGCACCTAAACTACAGTGCTGCTGTAG
TACCCATTTTCTTCAAGCATACGCATTCTGTATGGCTTGTACTGCTGTAC
TCGTATGTgGGAGTACCCGGTCTCTCTGAGAACCCACGCCCCTACTGGGA
AACACGTCAACCCGCATCGTCATGTACGGAGCGCGGATCGTACCACGCAT
TTTCCATATCTGCTTGCGCGTGTTGCTCCGTACCACCTGCGCATGCGCAT
CAATCTGTGAATCCAGCCCACTGTCCTCCCTGTGCCTGGTCAGCTGCCGC
TGCATCAGCGTGCGAGCTCAGGGTGGCGGGTTAATTCGCCACGTGGTGTG
TCACGTATGTAGTGTTCATCTGAGCTAGCGGTGCTTTAATACACCGCCCC
GCTCTCACATTCGCCTCTCTGCCTTCACTTCTCACTTTTCCCTCTCCTCT
GAATACGGAGATCTGTCACTTTTCTGCCTCGTTTGTCGTCCCAGAACATC
TTGTCTGTCCGCGTGGCCTGCATACCGCATCACACGCCCTTCTACCACTG
CTCAAGAGAGAGCTCTCCCGTGACTACACTGTCCCGAGAATCGAGGTTTC
ACACCCTCCGGTGGTTGCGCGAGTAGGAACCCTAACACCCGTACTGGCGT
CAGCGGCCACGTATGTAGGTCCATCTTCACGGCGAGGTTTCCCGGAGTTG
GTGTCCGGCTCTTCGTCATCTCTCTCTTCATCTCGCTTCCCCTGGAAACA
CTTTTCGAAAGTGTGGCCCGGCGGTGTCTTACATGCAAGAAAATACAAAA
CTTCAAAGAAAGACTGCTGATTGATTATTGGGCAGTACTCGTATGTAGCA
CGTGTACTTGTAGGTGGATGTTGTATATCTGGGTCCGTTCCGAGGAACCT
TCTTATGGTTCTATTCAGGAAGTTTGGTTCTCGGGGCATTATCACGTTGT
AGGTTATGTATCCCGGCATGTTTTGTATGCGTGGCGAGCCCACGTGTTCA
GTTGGCTGTCGTGCGGTTCCACCATCTCCGTCTCCTCGTTGGAGCTCGAT
AATAAGAAGTTTATAAACCCCAGAAACCTCGCCGTGAAAAGATGGAGCTA
ACTACAGAGTAGGGGTGCCCAGCTGGTGTGGCGTCTACAGTTGGGAAATT
CTCTGCGCCACGCTCCGTGTCTGTGTATACTACAGGCGTGTAGAGGAGAC
TCTCCGGGTCAGTAGCTGACGGTACTCCTGATTATGTTGTGCCCGGCCTT
CGTGTTCGCAACGGCAGGTATGTAGTACCTCGAGTCCGTGCCTGCCCTCA
TGTTACGAAGAGAAACTGTTGCGTTGTCTGCCGCGAGTGATTTACGTGTC
TCTTCCTCCGAGTTGCCGAACGACGTAGATTCACCTTGCTCGTTCCCTTG
CAAACGGGCAACGGGTCAAGCGTACCCGGCTTCTGAATCCCCGAGTGTGT
CTGCCTTTTTTTTGTTTTGTCAGGTAGCTCCTGTTAGTCGTAAACGTCTT
GGGTGTGTCGAGCCGGTGTTTCCTGCTGTGTCCGGCAGCCCTGTCGCGCG
TGAACGTGTACCGTGAAGCCTTTGATCCCCCCACTTGATATACTTCCTCG
TTTTGCCGAAAAATGGTCAAAACTTAAACTTTGTTTTATATCCGAGGAGA
TCGAAAAAAATCTCTCTGGGGGAGAAATCAAGGGTTTTACGGTAGTTTTT
ATTCGACGAGAGGGGGCATCATTGGGAAGCAAAATATTCCGCTTCTGGCA
CTGAGCAAACGCCGTTCCGTTTGGCACCGGCGGAGAGAGCGAGTGTAAAA
CAATGAACAGATGACGCAACTGCACATACACGCAATCATCCAAGTGTTTC
GCCATTGCTGGATATTTTTTCGTTGTTCATCCCTGGACTTCATCCACTGG
TTCAAACATACCAGCTGTTCATCGCAATAGCACGGCTGTACTTCCTCGTA
CCGACGACTTGTCTCCCCCGCGTCCTGGATTTGAGTCAGGGCGCGGGGGA
GACAAGTCGTCGGTATGAGGAGGTACAGCCGTGCCATTGCTGTGAACTGC
TGGGATGTGTGAACCAGTAAATGAAAACGACGGCGTTTTTTTTCCCAATC
GAGCACTGCTCCAAGATCAGACATGATGCTGTTGTCGAAGAGCAGAATCG
GGGTCAGGGGAGGTGACTATACACAGCGATTCTGAACAAATCGTTGTCAC
ACTCCGTAGCAAGTCGACATTAAACCATTGCATGAAGCCCTTGCTGTTGC
GTACACAGATGTTAATCCCCAGGAAGGTTGCACGGCAGTGGTCGAACCCC
ACATTGTCTCTAAAGAGACTTGTCCCACGACGAAACACTTGCTCCTTCCA
AGAAAATTATCGTCGCCTGTACTGGTGTCCAAATCGCCAACCCCTCCGAA
AATGGCGTCCGTCTCTACGACGATTTGTGTCTCGGTAACTTATTCACTGC
TGTGTCTGTCGCGTCCCCTGACCAACTACAAGCCAACTCTGTCGCGAACA
CCCCCGTCACCGACGAATGATATTGGCGCGCGACGTCCGAGCTCGAAGGT
AGGGCAGACAACAACAGGGCTTCAGTTGAGGCGGGGGGCTAGACCCACGG
GCTATCAAAAACGAATAACATCAGGGTCCTTCGTGAGAGACGTCGCAAGT
GACGTCACCCGGTCGTGTCGCCAGATACAACTTCGTCGCTTCTGGGCGAG
GATTGGTGTTTGGCGCGTTCGCACTCGACTATGAAAAAGGCGGTTTGTTT
GTGGATCTTTTGTGTGGTTTCCCTCTTCGTCGTCTTTTCCTCTCCATCCG
TGTCGGGGGGTTATCCGAGCCCTCTTTCTCCGGCATTGATGGAAGCCATA
GCCAGGAGCCCAGCTTTACTTGCAGCTACGCGTTCCTCCAAGTGAGCGAC
GTTTGCGGGACGGTCACGATGCAGGCTGCCCCCTTCGTATGTCTGGCGTT
CTGGGCGCCCCCTAAGCGCAGAGGTTCGTGTGCAAGACGATTCGATCTGG
GACACGCATCAAAGACACGAGCATCGAGCACAGCGTAGCGCCAGCTTCAC
ATAGACCTAAACAGTGTTCAGAGAGGATGCATATGTCCAAGTTATGGTGT
TTGAAAGCTTCGCGAGGACTTCCCCGGCAGCTCAAATGGATTGTTTCACA
TTACGGACAAGCAGCGCACGGCGTCAAAAACTTGGCACACACGTATCTAC
TGCTGTCTCGTTGGCTGCTGCAGTTTGGTGGACGTAGCAGTGTTTTTACT
GGAGGTAGGCGCGGGGCCATCATTGCCGGTGGCGCATTGAGCGGCGGCGA
GGGCGGACCTGTACCTTTCGCCGTGGCGATAACACTAGCATAATAAATCG
TGGGAGAGGGCAGACACCCTCGCATCGGGTGTGAGCAGATGCGGGCCGAG
GAATATTGGTTTTTGAGATTCGAGAGCCGTGCTCCGTGCACATGGGGTGT
GTGTATGTGCGGAGGCACCGCGGCGGCGTGGCTATGTTGGTTGAAGGTGG
TGAGAGAAGTTTGTGGGGGACTAGGAAAATTGGGGATTCACAGGACGTGG
GCTGACAGAGGTGGCTTGTTCGTAAAGTAGAGCTTTCAATGATGCTGCCC
TTGACGGAGCTTGGCGGTTGGCGAGGCCATGCTCCGCCGACAAAGTCTAT
GTGTGTGCGTGCGGAGGCACCGCCGCGACGAAGGGGCTGTAGTTTGCACG
TGGCGAGAGAAAAGCGATGTGGTAATGAAAGTGGAATCAGGATTTCTGGA
GAGAAATGTTTCGCCGCAACAGAAACTAACACCCTCAAAAACTAGGCATT
ATTCGTTAGGAAGAACACTTGTGCGCATCTGTCGATGCGGATGCGCAGTT
CGTTTCCGCCCCTCACTGCCATGTCCCGGCCACGCCACCCACCACCCTCC
GTGTTGAAAATGAGAACCCGTGCGGTGCCTATCCTACCATTCACTACCCA
TCTCTCCCGGGCGTGGGCGTTGCATGCGTCGAACAAACAGGAGATCGCTC
GTCTCGACAGAGAGGGCAGACTCAAGAGAGCCGAGCTGGCCAAGATGGTG
GAGAAGGCCGAGGGACTGGTCAAGAGAGTAAACGGTAGCCTTGACCAACT
TGCTGACCACATGCTGGGAGCCCCTCGATAG

Coding sequence (CDS) from alignment at P-lacustris_contig1009:52058..56488+

>mRNA_P-lacustris_contig1009.175.1 ID=mRNA_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=918bp|location=Sequence derived from alignment at P-lacustris_contig1009:52058..56488+ (Pleurocladia lacustris SAG_25_93)
ATGGACGGCGATAAGGATGCCGTTTCTGCCATGCAAGAGTCCGTGGATCA
GCTGGCTCTCAGCATGTTCGATTCTCTTCGATTAATCCCCTTTTCAGAGG
AGGTCAAGGGAGGCGCAAGGGGCGTCGGTGTCGCTCCTCAACACAACATG
CACCAGCAACAACAGCCGTCGTTGCGACGAGCGGTTGCGACAAACGCTGC
TTGGGATAGCCAGGTGCAGTCGCTGGCGGAGGGTGTGCTGAAGCAGGGAA
GAGCCTTGGATGGCCTCATCGATGTGCTGCCAGGAGCAGAGCTTCGCGAA
GACCAGCAACTGGAGGCAAGTATGGACGGCGATAAGGATGCCGTTTCTGC
CATGCAAGAGTCCGTGGATCAGCTGGCTCTCAGCATGTTCGATTCTCTTC
GATTAATCCCCTTTTCAGAGGAGGTCAAGGGAGGCGCAAGGGGCGTCGGT
GTCGCTCCTCAACACAACATGCACCAGCAACAACAGCCGTCGTTGCGACG
AGCGGTTGCGACAAACGCTGCTTGGGATAGCCAGGTGCAGTCGCTGGCGG
AGGGTGTGCTGAAGCAGGGAAGAGCCTTGGATGGCCTCATCGATGTGCTG
CCAGGAGCAGAGCTTCGCGAAGACCAGCAACTGGAGGCAAGTATCGCTCG
TCTCGACAGAGAGGGCAGACTCAAGAGAGCCGAGCTGGCCAAGATGGTGG
AGAAGGCCGAGGGACTGGTCAAGAGAGTAAACGGTAGCCTTGACCAACTT
GCTGACCACATGCTGGGAGCCCCTCGATAGATCGCTCGTCTCGACAGAGA
GGGCAGACTCAAGAGAGCCGAGCTGGCCAAGATGGTGGAGAAGGCCGAGG
GACTGGTCAAGAGAGTAAACGGTAGCCTTGACCAACTTGCTGACCACATG
CTGGGAGCCCCTCGATAG