prot_P-lacustris_contig1009.175.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1009.175.1
Unique Nameprot_P-lacustris_contig1009.175.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length153
Homology
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 5.700e-70
Identity = 123/152 (80.92%), Postives = 127/152 (83.55%), Query Frame = 0
Query:    1 MDGDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGAPR 152
            M+ DKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGV    Q    Q     LRRAV TNAAW   VQSLA+GVLKQ RALDGLIDVLPGAELREDQQ+E  IARLDREG+LKR ELAKMVEKAE L K VNGSLDQLADHMLGAPR
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME-EIARLDREGKLKRTELAKMVEKAEALSKGVNGSLDQLADHMLGAPR 171          
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.810e-8
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 0
Query:    4 DKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGAPR 152
            D+D VS MQ+ VDQLAL+MF+S+R +P        A    V+   +  QQQ             W   V +L+  V+ + RALD +I+ LPG +  E QQL+  +  L  E      +L     +A       +  LD L+  +L AP+
Sbjct:   21 DQDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQH---------GQQWIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQLQ-ELKELGEESAALALQLRGRTAEAAAAADAADKVLDHLSSTLLVAPQ 159          
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: K3X2M6_GLOUD (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)

HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 0
Query:    6 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHML 148
            D VS +QESVD++ALSMF++LRL+P S   +G       A                          ++SLA  VL+  +  D LID LPG E  E +QLE  +  L  +   +   L ++ E+AE  + R   SL  +++  L
Sbjct:   33 DKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEETAAA--------------------------IRSLANDVLRMVKETDALIDDLPGLEKTESEQLE-ELRHLQIQSEEEAQTLRQVAEEAERWMDRARDSLRVISETRL 148          
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match: A0A5D6YEG9_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.010e-6
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 0
Query:    6 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHML 148
            D VS +QESVD++ALSMF++LRL+P           VG             S  RA    A     ++SLA+ VL+  +  D LID LPG +  E  QLE  + RL  E   +   L ++ ++AE  + R   SL  +++  L
Sbjct:   26 DKVSLLQESVDKMALSMFNALRLLP-----------VG-------------SGDRAETATA-----IRSLADDVLRMVKETDALIDDLPGLDKTESDQLE-ELRRLQIESEEEAQTLRQVADEAERWMDRARDSLRVISETRL 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV36_ECTSI5.700e-7080.92Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z332_9STRA3.810e-832.21Mediator of RNA polymerase II transcription subuni... [more]
K3X2M6_GLOUD2.330e-732.17Mediator of RNA polymerase II transcription subuni... [more]
A0A5D6YEG9_9STRA2.010e-634.27Mediator of RNA polymerase II transcription subuni... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.470coord: 5..146
e-value: 7.5E-12
score: 47.4
NoneNo IPR availablePANTHERPTHR13381:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 21coord: 6..149
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 6..144
e-value: 1.5E-22
score: 80.4
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 6..149
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 6..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1009contigP-lacustris_contig1009:52058..56488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1009.175.1mRNA_P-lacustris_contig1009.175.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1009 52058..56488 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1009.175.1 ID=prot_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=153bp
MDGDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNM
HQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELRE
DQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGA
PR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
IPR037212Med7/Med21-like