Homology
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match:
D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)
HSP 1 Score: 217 bits (553), Expect = 5.700e-70
Identity = 123/152 (80.92%), Postives = 127/152 (83.55%), Query Frame = 1
Query: 1 MDGDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGAPR 456
M+ DKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGV Q Q LRRAV TNAAW VQSLA+GVLKQ RALDGLIDVLPGAELREDQQ+E IARLDREG+LKR ELAKMVEKAE L K VNGSLDQLADHMLGAPR
Sbjct: 21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME-EIARLDREGKLKRTELAKMVEKAEALSKGVNGSLDQLADHMLGAPR 171
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match:
A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)
HSP 1 Score: 59.3 bits (142), Expect = 3.810e-8
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 1
Query: 10 DKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHMLGAPR 456
D+D VS MQ+ VDQLAL+MF+S+R +P A V+ + QQQ W V +L+ V+ + RALD +I+ LPG + E QQL+ + L E +L +A + LD L+ +L AP+
Sbjct: 21 DQDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQH---------GQQWIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQLQ-ELKELGEESAALALQLRGRTAEAAAAADAADKVLDHLSSTLLVAPQ 159
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match:
K3X2M6_GLOUD (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)
HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHML 444
D VS +QESVD++ALSMF++LRL+P S +G A ++SLA VL+ + D LID LPG E E +QLE + L + + L ++ E+AE + R SL +++ L
Sbjct: 33 DKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEETAAA--------------------------IRSLANDVLRMVKETDALIDDLPGLEKTESEQLE-ELRHLQIQSEEEAQTLRQVAEEAERWMDRARDSLRVISETRL 148
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Match:
A0A5D6YEG9_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA)
HSP 1 Score: 54.3 bits (129), Expect = 2.010e-6
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNMHQQQQPSLRRAVATNAAWDSQVQSLAEGVLKQGRALDGLIDVLPGAELREDQQLEASIARLDREGRLKRAELAKMVEKAEGLVKRVNGSLDQLADHML 444
D VS +QESVD++ALSMF++LRL+P VG S RA A ++SLA+ VL+ + D LID LPG + E QLE + RL E + L ++ ++AE + R SL +++ L
Sbjct: 26 DKVSLLQESVDKMALSMFNALRLLP-----------VG-------------SGDRAETATA-----IRSLADDVLRMVKETDALIDDLPGLDKTESDQLE-ELRRLQIESEEEAQTLRQVADEAERWMDRARDSLRVISETRL 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.175.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 5.70e-70 / Id = 80.92 Expect = 3.81e-8 / Id = 32.21 Expect = 2.33e-7 / Id = 32.17 Expect = 2.01e-6 / Id = 34.27 Sequence D7FV36_ECTSI A0A835Z332_9STRA K3X2M6_GLOUD A0A5D6YEG9_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description Mediator complex, subunit Med21 Ec32 ortholog Ec-12_005030.1 Exons 2 Model size 459 Cds size 459 Stop 1 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815276.0197797-CDS-P-lacustris_contig1009:52057..52378 1622815276.0197797-CDS-P-lacustris_contig1009:52057..52378 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1009 52058..52378 + 1693493444.471949-CDS-P-lacustris_contig1009:52057..52378 1693493444.471949-CDS-P-lacustris_contig1009:52057..52378 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1009 52058..52378 + 1622815276.030657-CDS-P-lacustris_contig1009:56350..56488 1622815276.030657-CDS-P-lacustris_contig1009:56350..56488 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1009 56351..56488 + 1693493444.4844968-CDS-P-lacustris_contig1009:56350..56488 1693493444.4844968-CDS-P-lacustris_contig1009:56350..56488 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1009 56351..56488 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1009.175.1
>prot_P-lacustris_contig1009.175.1 ID=prot_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=153bp
MDGDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVGVAPQHNM back to top mRNA from alignment at P-lacustris_contig1009:52058..56488+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1009.175.1 ID=mRNA_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4431bp|location=Sequence derived from alignment at P-lacustris_contig1009:52058..56488+ (Pleurocladia lacustris SAG_25_93)ATGGACGGCGATAAGGATGCCGTTTCTGCCATGCAAGAGTCCGTGGATCA
GCTGGCTCTCAGCATGTTCGATTCTCTTCGATTAATCCCCTTTTCAGAGG
AGGTCAAGGGAGGCGCAAGGGGCGTCGGTGTCGCTCCTCAACACAACATG
CACCAGCAACAACAGCCGTCGTTGCGACGAGCGGTTGCGACAAACGCTGC
TTGGGATAGCCAGGTGCAGTCGCTGGCGGAGGGTGTGCTGAAGCAGGGAA
GAGCCTTGGATGGCCTCATCGATGTGCTGCCAGGAGCAGAGCTTCGCGAA
GACCAGCAACTGGAGGCAAGT GTCGCACCTAAACTACAGTGCTGCTGTAG
TACCCATTTTCTTCAAGCATACGCATTCTGTATGGCTTGTACTGCTGTAC
TCGTATGTgGGAGTACCCGGTCTCTCTGAGAACCCACGCCCCTACTGGGA
AACACGTCAACCCGCATCGTCATGTACGGAGCGCGGATCGTACCACGCAT
TTTCCATATCTGCTTGCGCGTGTTGCTCCGTACCACCTGCGCATGCGCAT
CAATCTGTGAATCCAGCCCACTGTCCTCCCTGTGCCTGGTCAGCTGCCGC
TGCATCAGCGTGCGAGCTCAGGGTGGCGGGTTAATTCGCCACGTGGTGTG
TCACGTATGTAGTGTTCATCTGAGCTAGCGGTGCTTTAATACACCGCCCC
GCTCTCACATTCGCCTCTCTGCCTTCACTTCTCACTTTTCCCTCTCCTCT
GAATACGGAGATCTGTCACTTTTCTGCCTCGTTTGTCGTCCCAGAACATC
TTGTCTGTCCGCGTGGCCTGCATACCGCATCACACGCCCTTCTACCACTG
CTCAAGAGAGAGCTCTCCCGTGACTACACTGTCCCGAGAATCGAGGTTTC
ACACCCTCCGGTGGTTGCGCGAGTAGGAACCCTAACACCCGTACTGGCGT
CAGCGGCCACGTATGTAGGTCCATCTTCACGGCGAGGTTTCCCGGAGTTG
GTGTCCGGCTCTTCGTCATCTCTCTCTTCATCTCGCTTCCCCTGGAAACA
CTTTTCGAAAGTGTGGCCCGGCGGTGTCTTACATGCAAGAAAATACAAAA
CTTCAAAGAAAGACTGCTGATTGATTATTGGGCAGTACTCGTATGTAGCA
CGTGTACTTGTAGGTGGATGTTGTATATCTGGGTCCGTTCCGAGGAACCT
TCTTATGGTTCTATTCAGGAAGTTTGGTTCTCGGGGCATTATCACGTTGT
AGGTTATGTATCCCGGCATGTTTTGTATGCGTGGCGAGCCCACGTGTTCA
GTTGGCTGTCGTGCGGTTCCACCATCTCCGTCTCCTCGTTGGAGCTCGAT
AATAAGAAGTTTATAAACCCCAGAAACCTCGCCGTGAAAAGATGGAGCTA
ACTACAGAGTAGGGGTGCCCAGCTGGTGTGGCGTCTACAGTTGGGAAATT
CTCTGCGCCACGCTCCGTGTCTGTGTATACTACAGGCGTGTAGAGGAGAC
TCTCCGGGTCAGTAGCTGACGGTACTCCTGATTATGTTGTGCCCGGCCTT
CGTGTTCGCAACGGCAGGTATGTAGTACCTCGAGTCCGTGCCTGCCCTCA
TGTTACGAAGAGAAACTGTTGCGTTGTCTGCCGCGAGTGATTTACGTGTC
TCTTCCTCCGAGTTGCCGAACGACGTAGATTCACCTTGCTCGTTCCCTTG
CAAACGGGCAACGGGTCAAGCGTACCCGGCTTCTGAATCCCCGAGTGTGT
CTGCCTTTTTTTTGTTTTGTCAGGTAGCTCCTGTTAGTCGTAAACGTCTT
GGGTGTGTCGAGCCGGTGTTTCCTGCTGTGTCCGGCAGCCCTGTCGCGCG
TGAACGTGTACCGTGAAGCCTTTGATCCCCCCACTTGATATACTTCCTCG
TTTTGCCGAAAAATGGTCAAAACTTAAACTTTGTTTTATATCCGAGGAGA
TCGAAAAAAATCTCTCTGGGGGAGAAATCAAGGGTTTTACGGTAGTTTTT
ATTCGACGAGAGGGGGCATCATTGGGAAGCAAAATATTCCGCTTCTGGCA
CTGAGCAAACGCCGTTCCGTTTGGCACCGGCGGAGAGAGCGAGTGTAAAA
CAATGAACAGATGACGCAACTGCACATACACGCAATCATCCAAGTGTTTC
GCCATTGCTGGATATTTTTTCGTTGTTCATCCCTGGACTTCATCCACTGG
TTCAAACATACCAGCTGTTCATCGCAATAGCACGGCTGTACTTCCTCGTA
CCGACGACTTGTCTCCCCCGCGTCCTGGATTTGAGTCAGGGCGCGGGGGA
GACAAGTCGTCGGTATGAGGAGGTACAGCCGTGCCATTGCTGTGAACTGC
TGGGATGTGTGAACCAGTAAATGAAAACGACGGCGTTTTTTTTCCCAATC
GAGCACTGCTCCAAGATCAGACATGATGCTGTTGTCGAAGAGCAGAATCG
GGGTCAGGGGAGGTGACTATACACAGCGATTCTGAACAAATCGTTGTCAC
ACTCCGTAGCAAGTCGACATTAAACCATTGCATGAAGCCCTTGCTGTTGC
GTACACAGATGTTAATCCCCAGGAAGGTTGCACGGCAGTGGTCGAACCCC
ACATTGTCTCTAAAGAGACTTGTCCCACGACGAAACACTTGCTCCTTCCA
AGAAAATTATCGTCGCCTGTACTGGTGTCCAAATCGCCAACCCCTCCGAA
AATGGCGTCCGTCTCTACGACGATTTGTGTCTCGGTAACTTATTCACTGC
TGTGTCTGTCGCGTCCCCTGACCAACTACAAGCCAACTCTGTCGCGAACA
CCCCCGTCACCGACGAATGATATTGGCGCGCGACGTCCGAGCTCGAAGGT
AGGGCAGACAACAACAGGGCTTCAGTTGAGGCGGGGGGCTAGACCCACGG
GCTATCAAAAACGAATAACATCAGGGTCCTTCGTGAGAGACGTCGCAAGT
GACGTCACCCGGTCGTGTCGCCAGATACAACTTCGTCGCTTCTGGGCGAG
GATTGGTGTTTGGCGCGTTCGCACTCGACTATGAAAAAGGCGGTTTGTTT
GTGGATCTTTTGTGTGGTTTCCCTCTTCGTCGTCTTTTCCTCTCCATCCG
TGTCGGGGGGTTATCCGAGCCCTCTTTCTCCGGCATTGATGGAAGCCATA
GCCAGGAGCCCAGCTTTACTTGCAGCTACGCGTTCCTCCAAGTGAGCGAC
GTTTGCGGGACGGTCACGATGCAGGCTGCCCCCTTCGTATGTCTGGCGTT
CTGGGCGCCCCCTAAGCGCAGAGGTTCGTGTGCAAGACGATTCGATCTGG
GACACGCATCAAAGACACGAGCATCGAGCACAGCGTAGCGCCAGCTTCAC
ATAGACCTAAACAGTGTTCAGAGAGGATGCATATGTCCAAGTTATGGTGT
TTGAAAGCTTCGCGAGGACTTCCCCGGCAGCTCAAATGGATTGTTTCACA
TTACGGACAAGCAGCGCACGGCGTCAAAAACTTGGCACACACGTATCTAC
TGCTGTCTCGTTGGCTGCTGCAGTTTGGTGGACGTAGCAGTGTTTTTACT
GGAGGTAGGCGCGGGGCCATCATTGCCGGTGGCGCATTGAGCGGCGGCGA
GGGCGGACCTGTACCTTTCGCCGTGGCGATAACACTAGCATAATAAATCG
TGGGAGAGGGCAGACACCCTCGCATCGGGTGTGAGCAGATGCGGGCCGAG
GAATATTGGTTTTTGAGATTCGAGAGCCGTGCTCCGTGCACATGGGGTGT
GTGTATGTGCGGAGGCACCGCGGCGGCGTGGCTATGTTGGTTGAAGGTGG
TGAGAGAAGTTTGTGGGGGACTAGGAAAATTGGGGATTCACAGGACGTGG
GCTGACAGAGGTGGCTTGTTCGTAAAGTAGAGCTTTCAATGATGCTGCCC
TTGACGGAGCTTGGCGGTTGGCGAGGCCATGCTCCGCCGACAAAGTCTAT
GTGTGTGCGTGCGGAGGCACCGCCGCGACGAAGGGGCTGTAGTTTGCACG
TGGCGAGAGAAAAGCGATGTGGTAATGAAAGTGGAATCAGGATTTCTGGA
GAGAAATGTTTCGCCGCAACAGAAACTAACACCCTCAAAAACTAGGCATT
ATTCGTTAGGAAGAACACTTGTGCGCATCTGTCGATGCGGATGCGCAGTT
CGTTTCCGCCCCTCACTGCCATGTCCCGGCCACGCCACCCACCACCCTCC
GTGTTGAAAATGAGAACCCGTGCGGTGCCTATCCTACCATTCACTACCCA
TCTCTCCCGGGCGTGGGCGTTGCATGCGTCGAACAAACAGGAGATCGCTC
GTCTCGACAGAGAGGGCAGACTCAAGAGAGCCGAGCTGGCCAAGATGGTG
GAGAAGGCCGAGGGACTGGTCAAGAGAGTAAACGGTAGCCTTGACCAACT
TGCTGACCACATGCTGGGAGCCCCTCGATAG back to top Coding sequence (CDS) from alignment at P-lacustris_contig1009:52058..56488+
>mRNA_P-lacustris_contig1009.175.1 ID=mRNA_P-lacustris_contig1009.175.1|Name=mRNA_P-lacustris_contig1009.175.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=918bp|location=Sequence derived from alignment at P-lacustris_contig1009:52058..56488+ (Pleurocladia lacustris SAG_25_93) back to top