mRNA_P-lacustris_contig1006.156.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1006.156.1
Unique NamemRNA_P-lacustris_contig1006.156.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.810e-29
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 2 
Query:   47 MGKQPKTFRIKGEASIGSHRDVERLFGKLNNAKHPSKDKLLELKYVFSGIGGSKA--FLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGERQAPGRCQATVELEAASAP-----GHCPATFVLVGLSQQATYSYDAQVGLVRGRSEPRGAHNVEVVSVAP 538
            MGKQ  TFRI+G AS  SH DVE  F K            + L Y F+ IG S++   LINL+ KATL  V++ +K  LG  + +  V++   G++F+PGERQ  GRC+AT+E+EAA+A      G   A FVLVG+SQ+ATYSY+ Q GLV+  +E R A  +E  +  P
Sbjct:    1 MGKQTTTFRIQGAASAISHLDVESFFDKFG----------VPLNYAFAAIGISESTTILINLK-KATLASVEKTLKRDLGTQYTAEAVERAESGQRFVPGERQKNGRCKATIEIEAAAAAAASRLGDSTAKFVLVGVSQRATYSYNTQAGLVKVGNEKRTARPLEKGNPVP 160
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BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.390e-28
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 2 
Query:   98 SHRDVERLFGKLNNAKHPSKDKLLELKYVFSGIG-GSKAFLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGERQAPGRCQATVELEAASAP------GHCPAT-FVLVGLSQQATYSYDAQVGLVR-GRSEPRGAHNVE 520
            +H DVE  F K+N  KH      + LKY F+GIG GS AFL+NL+ KATL FV++ ++ ALG  +++  V   T G+KF+PGERQ  GRC+ T+ELEAA+A       G  PA  FVLVG+SQ+ATYSY+ Q GLV+ G++E R A  +E
Sbjct:    5 THLDVESFFDKIN--KH------VGLKYAFAGIGLGSNAFLVNLKNKATLTFVEKALERALGSQYSAEAVATST-GQKFVPGERQNEGRCKTTIELEAAAASAAASHIGDSPARIFVLVGVSQRATYSYNTQAGLVKVGKNEERTACPLE 145
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BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.310e-5
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  551 GKYAEAEPLYERSQAIREKVLGPEHPNV 634
            GKYAEAEPLYERSQAIREK+LGPEHP+V
Sbjct:  292 GKYAEAEPLYERSQAIREKMLGPEHPDV 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJT9_ECTSI4.810e-2945.03Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT7_ECTSI5.390e-2850.67Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
A0A6H5KIY6_9PHAE2.310e-592.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1006contigP-lacustris_contig1006:41783..44004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue1.5e-26
Seed eggNOG ortholog2880.D7FJT9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size636
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1006.156.1prot_P-lacustris_contig1006.156.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1006 41783..43958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.3267107-CDS-P-lacustris_contig1006:41782..418661622815273.3267107-CDS-P-lacustris_contig1006:41782..41866Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1006 41783..41866 -
1693493442.9192278-CDS-P-lacustris_contig1006:41782..418661693493442.9192278-CDS-P-lacustris_contig1006:41782..41866Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1006 41783..41866 -
1622815273.3353815-CDS-P-lacustris_contig1006:43454..439581622815273.3353815-CDS-P-lacustris_contig1006:43454..43958Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1006 43455..43958 -
1693493442.933268-CDS-P-lacustris_contig1006:43454..439581693493442.933268-CDS-P-lacustris_contig1006:43454..43958Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1006 43455..43958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.3503036-UTR-P-lacustris_contig1006:43958..440041622815273.3503036-UTR-P-lacustris_contig1006:43958..44004Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 43959..44004 -
1693493442.9448602-UTR-P-lacustris_contig1006:43958..440041693493442.9448602-UTR-P-lacustris_contig1006:43958..44004Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 43959..44004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1006.156.1

>prot_P-lacustris_contig1006.156.1 ID=prot_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=196bp
MGKQPKTFRIKGEASIGSHRDVERLFGKLNNAKHPSKDKLLELKYVFSGI
GGSKAFLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGER
QAPGRCQATVELEAASAPGHCPATFVLVGLSQQATYSYDAQVGLVRGRSE
PRGAHNVEVVSVAPKTQKGKYAEAEPLYERSQAIREKVLGPEHPNV
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mRNA from alignment at P-lacustris_contig1006:41783..44004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1006.156.1 ID=mRNA_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2222bp|location=Sequence derived from alignment at P-lacustris_contig1006:41783..44004- (Pleurocladia lacustris SAG_25_93)
CACACGTGTCTTGTCATATGTCCTACTCGACCTACATCTCTGAATCATGG
GCAAGCAACCGAAAACCTTTCGAATAAAGGGAGAGGCAAGCATAGGAAGC
CATCGTGATGTCGAGCGGCTCTTCGGCAAGCTGAACAACGCCAAGCATCC
GTCCAAAGATAAACTGCTCGAGCTGAAGTATGTGTTTTCTGGGATCGGCG
GCAGCAAAGCGTTCCTCATCAACCTCGAGACCAAGGCTACCCTGAACTTC
GTGGACGAGGTCGTGAAAGAAGCCCTTGGCCCTCACTTCAACTCGGCGCC
CGTGGATAAAGTCACGAGGGGAGAGAAGTTCATCCCTGGAGAACGACAAG
CACCGGGTCGATGCCAGGCTACAGTAGAGCTGGAGGCAGCATCAGCACCA
GGCCATTGCCCCGCTACTTTTGTTCTCGTCGGACTTTCGCAGCAGGCAAC
GTACTCGTACGACGCCCAAGTTGGCCTTGTCAGGGGACGCTCCGAGCCCA
GGGGTGCGCATAATGTCGAAGTGGTGTCCGTTGCGCCAAAGACGCAAAAG
GTAAGCGAGTGCTCTCCGACTGAAATCGAGGAACGTTCCGTAACCGCCGC
TCGGTTGGCACCCCGTGTTTACCGTGTGTGAGTGTAATGTACGTATGTAT
GTTGCTCGGAAGCGCACCCCTCCGGTTAGTTCGGAATGGACCACAGACCA
CAGCTGACGCCGCCAGTAGCGTCGAAACCTGCTCTATATGTGTGTGTTGC
AATTACATCTTCATTTTGGGCGCTAGTGTACACGTCACGGCGAAAAATAC
AGCAGAAATATCATGGTACATCGTACACGCGCGGACCGGCCGGGTTCACA
CAGGAGACCGGCCACCTGTGGAGTTTCTTTTCTTTTTTTTCACCTTCAGG
TTGCCTTGATTGTTTTCGCGAGAAAGGTTCAGCCTTCCCTATCCCTCGTC
AATCGTCAAATCGAATAGCAAGGTGCTTCAGCACTAGACTTCGGGGTATG
TGTCAGCTGTTTTGAAAAGCACACCTGCAGTAGGCTACCTTTTCGTTACG
TGGAGGGACTGTACCTTGTACCTTATTCCGCGGAGCAAGCAAAAATAAAA
AAAATAAAAAACCGCCCGACTGCTGAAAAACATGCCTGCGGAACCGACAC
TGGTACCCCTTGTATAAAGCGACCTCAGGGAACCTCTCTCCACCAACTCA
TCACCACACAGCTCTCCTTCAGTACTCCAAGGTATCTAACATATAGTTGT
ACCCAATTCAAGTCTCCCAATCGCAAACCATCTTGTGTTCGTCTCGCAAT
TAGCGATACGGTGAGCAGAACCAAATAACGAGCGAGCGAGCGAGCAGACA
ACAGTTTGAAAATCTTCTATTGTGGGCCCAAAATCCGACAGACTCTCTGA
AAAATCCTCCTGTCGGATTTACAAAGACCAGATTTCCACCAAAATCCGGC
CCATAACTTTTGGTATCTCAATCATTGTTCGTCGAATTTCGAATCTGACC
CGGAAATCCGGTCACCGTAAGAGTTGGCCTGATGCATCAGGTAGGAGCCG
TTAGAATTTTCCAGGCATTTTCTGCGTGGAAGGTTGCCATGTTTGTTTAA
ATTTCTCTTGGTGCGAATGGCTCAGCAACCGGGCGGGGTTGTTGAGGAGG
CAGGTGAGATCAGTCAGAATTTTCCGAGAAGTTTCTTGTGGTTCCGTGTG
GATGTTGGAGAAACACGTGAGAGCCGCAGGATCTTTCCAGGATTTTTCTG
TGCGGAGGACTGTAACATTCGTAGAAATTTCTTGTGGTGTGAAGGCCATT
GCTCAACAACAGGGCGGGGTTGTTGAAGAGCCAGGTGAGAGCATCAGGAA
TTTTCCGGGAATTTTCGTAGGGCGCGCGTTTGTTGGCAGCATATTTTCTT
TCCTTTGGCCACTCGCTTACGCGAACCTATTACTTGTTTCACAGGGGAAG
TACGACGAGGCGGAGCCGTTGTACACTAGAGCTATCGCGATAGGAGAAAA
GGCGTTGGGTCCAGACCATCCAGATCTGGCCGTGTGGCTCAACAACAGGG
CGGGGTTGTTGAGCATATGTTCCTCCGCATTCAACTCAACTATTTTTGAC
AGCACTTGCCCCTGTCTTGGTGTTCCCTCGTACCTCAGGGGAAGTATGCT
GAAGCAGAGCCCCTCTATGAGCGGTCGCAAGCCATTCGAGAGAAGGTGCT
TGGTCCAGAGCATCCGAATGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig1006:41783..44004-

>mRNA_P-lacustris_contig1006.156.1 ID=mRNA_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1176bp|location=Sequence derived from alignment at P-lacustris_contig1006:41783..44004- (Pleurocladia lacustris SAG_25_93)
ATGGGCAAGCAACCGAAAACCTTTCGAATAAAGGGAGAGGCAAGCATAGG
AAGCCATCGTGATGTCGAGCGGCTCTTCGGCAAGCTGAACAACGCCAAGC
ATCCGTCCAAAGATAAACTGCTCGAGCTGAAGTATGTGTTTTCTGGGATC
GGCGGCAGCAAAGCGTTCCTCATCAACCTCGAGACCAAGGCTACCCTGAA
CTTCGTGGACGAGGTCGTGAAAGAAGCCCTTGGCCCTCACTTCAACTCGG
CGCCCGTGGATAAAGTCACGAGGGGAGAGAAGTTCATCCCTGGAGAACGA
CAAGCACCGGGTCGATGCCAGGCTACAGTAGAGCTGGAGGCAGCATCAGC
ACCAGGCCATTGCCCCGCTACTTTTGTTCTCGTCGGACTTTCGCAGCAGG
CAACGTACTCGTACGACGCCCAAGTTGGCCTTGTCAGGGGACGCTCCGAG
CCCAGGGGTGCGCATAATGTCGAAGTGGTGTCCGTTGCGCCAAAGACGCA
AAAGATGGGCAAGCAACCGAAAACCTTTCGAATAAAGGGAGAGGCAAGCA
TAGGAAGCCATCGTGATGTCGAGCGGCTCTTCGGCAAGCTGAACAACGCC
AAGCATCCGTCCAAAGATAAACTGCTCGAGCTGAAGTATGTGTTTTCTGG
GATCGGCGGCAGCAAAGCGTTCCTCATCAACCTCGAGACCAAGGCTACCC
TGAACTTCGTGGACGAGGTCGTGAAAGAAGCCCTTGGCCCTCACTTCAAC
TCGGCGCCCGTGGATAAAGTCACGAGGGGAGAGAAGTTCATCCCTGGAGA
ACGACAAGCACCGGGTCGATGCCAGGCTACAGTAGAGCTGGAGGCAGCAT
CAGCACCAGGCCATTGCCCCGCTACTTTTGTTCTCGTCGGACTTTCGCAG
CAGGCAACGTACTCGTACGACGCCCAAGTTGGCCTTGTCAGGGGACGCTC
CGAGCCCAGGGGTGCGCATAATGTCGAAGTGGTGTCCGTTGCGCCAAAGA
CGCAAAAGGGGAAGTATGCTGAAGCAGAGCCCCTCTATGAGCGGTCGCAA
GCCATTCGAGAGAAGGTGCTTGGTCCAGAGCATCCGAATGTGGGGAAGTA
TGCTGAAGCAGAGCCCCTCTATGAGCGGTCGCAAGCCATTCGAGAGAAGG
TGCTTGGTCCAGAGCATCCGAATGTG
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