prot_P-lacustris_contig1006.156.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1006.156.1
Unique Nameprot_P-lacustris_contig1006.156.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length196
Homology
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.160e-29
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 0
Query:    1 MGKQPKTFRIKGEASIGSHRDVERLFGKLNNAKHPSKDKLLELKYVFSGIGGSKA--FLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGERQAPGRCQATVELEAASAP-----GHCPATFVLVGLSQQATYSYDAQVGLVRGRSEPRGAHNVEVVSVAP 164
            MGKQ  TFRI+G AS  SH DVE  F K            + L Y F+ IG S++   LINL+ KATL  V++ +K  LG  + +  V++   G++F+PGERQ  GRC+AT+E+EAA+A      G   A FVLVG+SQ+ATYSY+ Q GLV+  +E R A  +E  +  P
Sbjct:    1 MGKQTTTFRIQGAASAISHLDVESFFDKFG----------VPLNYAFAAIGISESTTILINLK-KATLASVEKTLKRDLGTQYTAEAVERAESGQRFVPGERQKNGRCKATIEIEAAAAAAASRLGDSTAKFVLVGVSQRATYSYNTQAGLVKVGNEKRTARPLEKGNPVP 160          
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.320e-28
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 0
Query:   18 SHRDVERLFGKLNNAKHPSKDKLLELKYVFSGIG-GSKAFLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGERQAPGRCQATVELEAASAP------GHCPAT-FVLVGLSQQATYSYDAQVGLVR-GRSEPRGAHNVE 158
            +H DVE  F K+N  KH      + LKY F+GIG GS AFL+NL+ KATL FV++ ++ ALG  +++  V   T G+KF+PGERQ  GRC+ T+ELEAA+A       G  PA  FVLVG+SQ+ATYSY+ Q GLV+ G++E R A  +E
Sbjct:    5 THLDVESFFDKIN--KH------VGLKYAFAGIGLGSNAFLVNLKNKATLTFVEKALERALGSQYSAEAVATST-GQKFVPGERQNEGRCKTTIELEAAAASAAASHIGDSPARIFVLVGVSQRATYSYNTQAGLVKVGKNEERTACPLE 145          
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.730e-5
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0
Query:  169 GKYAEAEPLYERSQAIREKVLGPEHPNV 196
            GKYAEAEPLYERSQAIREK+LGPEHP+V
Sbjct:  292 GKYAEAEPLYERSQAIREKMLGPEHPDV 319          
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.750e-5
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0
Query:  161 SVAPKTQKGKYAEAEPLYERSQAIREKVLGPEHPNV 196
            S+     +GK+AEAEPLYERSQAIREKVLGP+HP+V
Sbjct:  359 SITDTAVQGKHAEAEPLYERSQAIREKVLGPKHPDV 394          
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.540e-5
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0
Query:  159 VVSVAPKTQKGKYAEAEPLYERSQAIREKVLGPEHPNV 196
            + ++ P   +GKY EAEPLYERSQAIREKVLG EHP V
Sbjct:    5 LATLCPPACQGKYTEAEPLYERSQAIREKVLGSEHPRV 42          
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 9.130e-5
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0
Query:  169 GKYAEAEPLYERSQAIREKVLGPEHPNV 196
            GKY EAEPLYERSQAI+EKVLG EHP+V
Sbjct:   19 GKYMEAEPLYERSQAIQEKVLGLEHPDV 46          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJT9_ECTSI2.160e-2945.03Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT7_ECTSI3.320e-2850.67Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
A0A6H5KIY6_9PHAE1.730e-592.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L226_9PHAE7.750e-572.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK1_9PHAE8.540e-568.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K3K8_9PHAE9.130e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 165..196
e-value: 7.4E-8
score: 33.8
NoneNo IPR availablePFAMPF13374TPR_10coord: 166..195
e-value: 1.8E-6
score: 27.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1006contigP-lacustris_contig1006:41783..43958 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1006.156.1mRNA_P-lacustris_contig1006.156.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1006 41783..44004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1006.156.1 ID=prot_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=196bp
MGKQPKTFRIKGEASIGSHRDVERLFGKLNNAKHPSKDKLLELKYVFSGI
GGSKAFLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGER
QAPGRCQATVELEAASAPGHCPATFVLVGLSQQATYSYDAQVGLVRGRSE
PRGAHNVEVVSVAPKTQKGKYAEAEPLYERSQAIREKVLGPEHPNV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf