Homology
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match:
D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)
HSP 1 Score: 124 bits (310), Expect = 4.810e-29
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 2
Query: 47 MGKQPKTFRIKGEASIGSHRDVERLFGKLNNAKHPSKDKLLELKYVFSGIGGSKA--FLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGERQAPGRCQATVELEAASAP-----GHCPATFVLVGLSQQATYSYDAQVGLVRGRSEPRGAHNVEVVSVAP 538
MGKQ TFRI+G AS SH DVE F K + L Y F+ IG S++ LINL+ KATL V++ +K LG + + V++ G++F+PGERQ GRC+AT+E+EAA+A G A FVLVG+SQ+ATYSY+ Q GLV+ +E R A +E + P
Sbjct: 1 MGKQTTTFRIQGAASAISHLDVESFFDKFG----------VPLNYAFAAIGISESTTILINLK-KATLASVEKTLKRDLGTQYTAEAVERAESGQRFVPGERQKNGRCKATIEIEAAAAAAASRLGDSTAKFVLVGVSQRATYSYNTQAGLVKVGNEKRTARPLEKGNPVP 160
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match:
D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)
HSP 1 Score: 120 bits (302), Expect = 5.390e-28
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 2
Query: 98 SHRDVERLFGKLNNAKHPSKDKLLELKYVFSGIG-GSKAFLINLETKATLNFVDEVVKEALGPHFNSAPVDKVTRGEKFIPGERQAPGRCQATVELEAASAP------GHCPAT-FVLVGLSQQATYSYDAQVGLVR-GRSEPRGAHNVE 520
+H DVE F K+N KH + LKY F+GIG GS AFL+NL+ KATL FV++ ++ ALG +++ V T G+KF+PGERQ GRC+ T+ELEAA+A G PA FVLVG+SQ+ATYSY+ Q GLV+ G++E R A +E
Sbjct: 5 THLDVESFFDKIN--KH------VGLKYAFAGIGLGSNAFLVNLKNKATLTFVEKALERALGSQYSAEAVATST-GQKFVPGERQNEGRCKTTIELEAAAASAAASHIGDSPARIFVLVGVSQRATYSYNTQAGLVKVGKNEERTACPLE 145
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Match:
A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)
HSP 1 Score: 55.1 bits (131), Expect = 2.310e-5
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 2
Query: 551 GKYAEAEPLYERSQAIREKVLGPEHPNV 634
GKYAEAEPLYERSQAIREK+LGPEHP+V
Sbjct: 292 GKYAEAEPLYERSQAIREKMLGPEHPDV 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.156.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 4.81e-29 / Id = 45.03 Expect = 5.39e-28 / Id = 50.67 Expect = 2.31e-5 / Id = 92.86 Sequence D7FJT9_ECTSI D7FJT7_ECTSI A0A6H5KIY6_9PHAE
Match Name E-value Identity Description
D7FJT9_ECTSI 4.810e-29 45.03 Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more] D7FJT7_ECTSI 5.390e-28 50.67 Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more] A0A6H5KIY6_9PHAE 2.310e-5 92.86 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 126.3 Seed ortholog evalue 1.5e-26 Seed eggNOG ortholog 2880.D7FJT9 Hectar predicted targeting category other localisation EggNOG free text desc. nuclear import signal receptor activity EggNOG OGs COG5064@1,KOG0166@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 2 Model size 636 Cds size 588 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815273.3267107-CDS-P-lacustris_contig1006:41782..41866 1622815273.3267107-CDS-P-lacustris_contig1006:41782..41866 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1006 41783..41866 - 1693493442.9192278-CDS-P-lacustris_contig1006:41782..41866 1693493442.9192278-CDS-P-lacustris_contig1006:41782..41866 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1006 41783..41866 - 1622815273.3353815-CDS-P-lacustris_contig1006:43454..43958 1622815273.3353815-CDS-P-lacustris_contig1006:43454..43958 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1006 43455..43958 - 1693493442.933268-CDS-P-lacustris_contig1006:43454..43958 1693493442.933268-CDS-P-lacustris_contig1006:43454..43958 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1006 43455..43958 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815273.3503036-UTR-P-lacustris_contig1006:43958..44004 1622815273.3503036-UTR-P-lacustris_contig1006:43958..44004 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1006 43959..44004 - 1693493442.9448602-UTR-P-lacustris_contig1006:43958..44004 1693493442.9448602-UTR-P-lacustris_contig1006:43958..44004 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1006 43959..44004 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1006.156.1
>prot_P-lacustris_contig1006.156.1 ID=prot_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=196bp
MGKQPKTFRIKGEASIGSHRDVERLFGKLNNAKHPSKDKLLELKYVFSGI back to top mRNA from alignment at P-lacustris_contig1006:41783..44004-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1006.156.1 ID=mRNA_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2222bp|location=Sequence derived from alignment at P-lacustris_contig1006:41783..44004- (Pleurocladia lacustris SAG_25_93)CACACGTGTCTTGTCATATGTCCTACTCGACCTACATCTCTGAATC ATGG
GCAAGCAACCGAAAACCTTTCGAATAAAGGGAGAGGCAAGCATAGGAAGC
CATCGTGATGTCGAGCGGCTCTTCGGCAAGCTGAACAACGCCAAGCATCC
GTCCAAAGATAAACTGCTCGAGCTGAAGTATGTGTTTTCTGGGATCGGCG
GCAGCAAAGCGTTCCTCATCAACCTCGAGACCAAGGCTACCCTGAACTTC
GTGGACGAGGTCGTGAAAGAAGCCCTTGGCCCTCACTTCAACTCGGCGCC
CGTGGATAAAGTCACGAGGGGAGAGAAGTTCATCCCTGGAGAACGACAAG
CACCGGGTCGATGCCAGGCTACAGTAGAGCTGGAGGCAGCATCAGCACCA
GGCCATTGCCCCGCTACTTTTGTTCTCGTCGGACTTTCGCAGCAGGCAAC
GTACTCGTACGACGCCCAAGTTGGCCTTGTCAGGGGACGCTCCGAGCCCA
GGGGTGCGCATAATGTCGAAGTGGTGTCCGTTGCGCCAAAGACGCAAAAG
GTAAGCGAGTGCTCTCCGACTGAAATCGAGGAACGTTCCGTAACCGCCGC
TCGGTTGGCACCCCGTGTTTACCGTGTGTGAGTGTAATGTACGTATGTAT
GTTGCTCGGAAGCGCACCCCTCCGGTTAGTTCGGAATGGACCACAGACCA
CAGCTGACGCCGCCAGTAGCGTCGAAACCTGCTCTATATGTGTGTGTTGC
AATTACATCTTCATTTTGGGCGCTAGTGTACACGTCACGGCGAAAAATAC
AGCAGAAATATCATGGTACATCGTACACGCGCGGACCGGCCGGGTTCACA
CAGGAGACCGGCCACCTGTGGAGTTTCTTTTCTTTTTTTTCACCTTCAGG
TTGCCTTGATTGTTTTCGCGAGAAAGGTTCAGCCTTCCCTATCCCTCGTC
AATCGTCAAATCGAATAGCAAGGTGCTTCAGCACTAGACTTCGGGGTATG
TGTCAGCTGTTTTGAAAAGCACACCTGCAGTAGGCTACCTTTTCGTTACG
TGGAGGGACTGTACCTTGTACCTTATTCCGCGGAGCAAGCAAAAATAAAA
AAAATAAAAAACCGCCCGACTGCTGAAAAACATGCCTGCGGAACCGACAC
TGGTACCCCTTGTATAAAGCGACCTCAGGGAACCTCTCTCCACCAACTCA
TCACCACACAGCTCTCCTTCAGTACTCCAAGGTATCTAACATATAGTTGT
ACCCAATTCAAGTCTCCCAATCGCAAACCATCTTGTGTTCGTCTCGCAAT
TAGCGATACGGTGAGCAGAACCAAATAACGAGCGAGCGAGCGAGCAGACA
ACAGTTTGAAAATCTTCTATTGTGGGCCCAAAATCCGACAGACTCTCTGA
AAAATCCTCCTGTCGGATTTACAAAGACCAGATTTCCACCAAAATCCGGC
CCATAACTTTTGGTATCTCAATCATTGTTCGTCGAATTTCGAATCTGACC
CGGAAATCCGGTCACCGTAAGAGTTGGCCTGATGCATCAGGTAGGAGCCG
TTAGAATTTTCCAGGCATTTTCTGCGTGGAAGGTTGCCATGTTTGTTTAA
ATTTCTCTTGGTGCGAATGGCTCAGCAACCGGGCGGGGTTGTTGAGGAGG
CAGGTGAGATCAGTCAGAATTTTCCGAGAAGTTTCTTGTGGTTCCGTGTG
GATGTTGGAGAAACACGTGAGAGCCGCAGGATCTTTCCAGGATTTTTCTG
TGCGGAGGACTGTAACATTCGTAGAAATTTCTTGTGGTGTGAAGGCCATT
GCTCAACAACAGGGCGGGGTTGTTGAAGAGCCAGGTGAGAGCATCAGGAA
TTTTCCGGGAATTTTCGTAGGGCGCGCGTTTGTTGGCAGCATATTTTCTT
TCCTTTGGCCACTCGCTTACGCGAACCTATTACTTGTTTCACAGGGGAAG
TACGACGAGGCGGAGCCGTTGTACACTAGAGCTATCGCGATAGGAGAAAA
GGCGTTGGGTCCAGACCATCCAGATCTGGCCGTGTGGCTCAACAACAGGG
CGGGGTTGTTGAGCATATGTTCCTCCGCATTCAACTCAACTATTTTTGAC
AGCACTTGCCCCTGTCTTGGTGTTCCCTCGTACCTCAGGGGAAGTATGCT
GAAGCAGAGCCCCTCTATGAGCGGTCGCAAGCCATTCGAGAGAAGGTGCT
TGGTCCAGAGCATCCGAATGTG back to top Coding sequence (CDS) from alignment at P-lacustris_contig1006:41783..44004-
>mRNA_P-lacustris_contig1006.156.1 ID=mRNA_P-lacustris_contig1006.156.1|Name=mRNA_P-lacustris_contig1006.156.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1176bp|location=Sequence derived from alignment at P-lacustris_contig1006:41783..44004- (Pleurocladia lacustris SAG_25_93) back to top