mRNA_P-lacustris_contig1002.133.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1002.133.1
Unique NamemRNA_P-lacustris_contig1002.133.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1002.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1002contigP-lacustris_contig1002:56003..56962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size960
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1002.133.1prot_P-lacustris_contig1002.133.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1002 56101..56670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2484348-UTR-P-lacustris_contig1002:56002..561001622815269.2484348-UTR-P-lacustris_contig1002:56002..56100Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 56003..56100 +
1693493440.3755188-UTR-P-lacustris_contig1002:56002..561001693493440.3755188-UTR-P-lacustris_contig1002:56002..56100Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 56003..56100 +
1622815269.2712324-UTR-P-lacustris_contig1002:56670..569621622815269.2712324-UTR-P-lacustris_contig1002:56670..56962Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 56671..56962 +
1693493440.397782-UTR-P-lacustris_contig1002:56670..569621693493440.397782-UTR-P-lacustris_contig1002:56670..56962Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 56671..56962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2619343-CDS-P-lacustris_contig1002:56100..566701622815269.2619343-CDS-P-lacustris_contig1002:56100..56670Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 56101..56670 +
1693493440.3849654-CDS-P-lacustris_contig1002:56100..566701693493440.3849654-CDS-P-lacustris_contig1002:56100..56670Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 56101..56670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1002.133.1

>prot_P-lacustris_contig1002.133.1 ID=prot_P-lacustris_contig1002.133.1|Name=mRNA_P-lacustris_contig1002.133.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=190bp
MKNRELPIKPILMEDTATHRKQQRFRRVLSRPAGCWPVFRVFPRLYASSS
IYSFHLVKGLALIGKKKETVQSGAISVVRTRKINAPPPADRAYLYPSCSI
ICSLAGFGLVATTTDLLTHLPRLCLPWWCGCNPFLAFIVVVEIMPSLIRL
IVWLAGATRIPSCMHVKTRTNSLNQNTRDFPVYKPFQQT*
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mRNA from alignment at P-lacustris_contig1002:56003..56962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1002.133.1 ID=mRNA_P-lacustris_contig1002.133.1|Name=mRNA_P-lacustris_contig1002.133.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=960bp|location=Sequence derived from alignment at P-lacustris_contig1002:56003..56962+ (Pleurocladia lacustris SAG_25_93)
GGTCTATTCAAAAACCAAGTCACCTTTTCTCAGATGTCTCCCGCACGCCT
ACCACCTCGCCCCCTTCCCCCGGGAGGGGGAAATTTCGAAAAATTACCAT
GAAAAATCGAGAATTACCCATAAAACCAATTTTGATGGAAGATACCGCAA
CACACAGAAAACAACAAAGATTTCGAAGAGTTTTAAGTCGTCCGGCCGGC
TGTTGGCCCGTCTTCCGGGTTTTCCCCCGACTATACGCATCGAGCTCTAT
TTATTCCTTTCACCTCGTGAAAGGGCTCGCATTGATTGGCAAAAAAAAGG
AAACCGTTCAATCAGGTGCCATCTCCGTTGTTCGTACACGGAAAATAAAT
GCACCACCACCAGCTGATCGTGCTTATTTGTATCCAAGCTGCAGCATTAT
TTGTAGCCTGGCTGGGTTCGGTTTGGTTGCGACTACGACTGACCTACTGA
CCCACCTACCGCGGCTCTGCTTGCCGTGGTGGTGTGGTTGCAATCCCTTC
TTGGCATTCATTGTGGTTGTCGAGATCATGCCCTCGTTGATCCGCTTGAT
TGTTTGGCTGGCCGGGGCCACGCGCATCCCATCGTGCATGCACGTGAAAA
CAAGAACCAATAGTCTAAATCAAAACACGCGGGACTTTCCGGTGTATAAA
CCCTTCCAACAAACGTGAGACTCCGCTATGCCTTCGTGGTTTCGAGATTC
TCGGCAGGCACGTGCCCCAAAGTCCTTTCTCCTTGTATTTACAACGCAGG
GAAAATCAGCTCACAAATAAAGTCTAAAAGTCAAGGTCAACTAGGCGACG
ATTCTTAGTGAGGGCAATCCTTCTTGAGACGCTGCTGACGTCGACCCTGG
CCACTGCGAGGTGTCCGACATCTCAAAGGGTCTCCAGGCGGCAACAGTCC
GTAGCAGACAGGCAGCGTGCCGGCGGGCATTGTAAAACCCGGGGGTCCTT
AGCGCGACGT
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Coding sequence (CDS) from alignment at P-lacustris_contig1002:56003..56962+

>mRNA_P-lacustris_contig1002.133.1 ID=mRNA_P-lacustris_contig1002.133.1|Name=mRNA_P-lacustris_contig1002.133.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1140bp|location=Sequence derived from alignment at P-lacustris_contig1002:56003..56962+ (Pleurocladia lacustris SAG_25_93)
ATGAAAAATCGAGAATTACCCATAAAACCAATTTTGATGGAAGATACCGC
AACACACAGAAAACAACAAAGATTTCGAAGAGTTTTAAGTCGTCCGGCCG
GCTGTTGGCCCGTCTTCCGGGTTTTCCCCCGACTATACGCATCGAGCTCT
ATTTATTCCTTTCACCTCGTGAAAGGGCTCGCATTGATTGGCAAAAAAAA
GGAAACCGTTCAATCAGGTGCCATCTCCGTTGTTCGTACACGGAAAATAA
ATGCACCACCACCAGCTGATCGTGCTTATTTGTATCCAAGCTGCAGCATT
ATTTGTAGCCTGGCTGGGTTCGGTTTGGTTGCGACTACGACTGACCTACT
GACCCACCTACCGCGGCTCTGCTTGCCGTGGTGGTGTGGTTGCAATCCCT
TCTTGGCATTCATTGTGGTTGTCGAGATCATGCCCTCGTTGATCCGCTTG
ATTGTTTGGCTGGCCGGGGCCACGCGCATCCCATCGTGCATGCACGTGAA
AACAAGAACCAATAGTCTAAATCAAAACACGCGGGACTTTCCGGTGTATA
AACCCTTCCAACAAACGTGAATGAAAAATCGAGAATTACCCATAAAACCA
ATTTTGATGGAAGATACCGCAACACACAGAAAACAACAAAGATTTCGAAG
AGTTTTAAGTCGTCCGGCCGGCTGTTGGCCCGTCTTCCGGGTTTTCCCCC
GACTATACGCATCGAGCTCTATTTATTCCTTTCACCTCGTGAAAGGGCTC
GCATTGATTGGCAAAAAAAAGGAAACCGTTCAATCAGGTGCCATCTCCGT
TGTTCGTACACGGAAAATAAATGCACCACCACCAGCTGATCGTGCTTATT
TGTATCCAAGCTGCAGCATTATTTGTAGCCTGGCTGGGTTCGGTTTGGTT
GCGACTACGACTGACCTACTGACCCACCTACCGCGGCTCTGCTTGCCGTG
GTGGTGTGGTTGCAATCCCTTCTTGGCATTCATTGTGGTTGTCGAGATCA
TGCCCTCGTTGATCCGCTTGATTGTTTGGCTGGCCGGGGCCACGCGCATC
CCATCGTGCATGCACGTGAAAACAAGAACCAATAGTCTAAATCAAAACAC
GCGGGACTTTCCGGTGTATAAACCCTTCCAACAAACGTGA
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