Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 960 |
| Cds size | 570 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815269.2484348-UTR-P-lacustris_contig1002:56002..56100 | 1622815269.2484348-UTR-P-lacustris_contig1002:56002..56100 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1002 56003..56100 + |
| 1693493440.3755188-UTR-P-lacustris_contig1002:56002..56100 | 1693493440.3755188-UTR-P-lacustris_contig1002:56002..56100 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1002 56003..56100 + |
| 1622815269.2712324-UTR-P-lacustris_contig1002:56670..56962 | 1622815269.2712324-UTR-P-lacustris_contig1002:56670..56962 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1002 56671..56962 + |
| 1693493440.397782-UTR-P-lacustris_contig1002:56670..56962 | 1693493440.397782-UTR-P-lacustris_contig1002:56670..56962 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1002 56671..56962 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815269.2619343-CDS-P-lacustris_contig1002:56100..56670 | 1622815269.2619343-CDS-P-lacustris_contig1002:56100..56670 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1002 56101..56670 + |
| 1693493440.3849654-CDS-P-lacustris_contig1002:56100..56670 | 1693493440.3849654-CDS-P-lacustris_contig1002:56100..56670 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1002 56101..56670 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1002.133.1 >prot_P-lacustris_contig1002.133.1 ID=prot_P-lacustris_contig1002.133.1|Name=mRNA_P-lacustris_contig1002.133.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=190bp
MKNRELPIKPILMEDTATHRKQQRFRRVLSRPAGCWPVFRVFPRLYASSS
IYSFHLVKGLALIGKKKETVQSGAISVVRTRKINAPPPADRAYLYPSCSI
ICSLAGFGLVATTTDLLTHLPRLCLPWWCGCNPFLAFIVVVEIMPSLIRL
IVWLAGATRIPSCMHVKTRTNSLNQNTRDFPVYKPFQQT* back to topmRNA from alignment at P-lacustris_contig1002:56003..56962+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1002.133.1 ID=mRNA_P-lacustris_contig1002.133.1|Name=mRNA_P-lacustris_contig1002.133.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=960bp|location=Sequence derived from alignment at P-lacustris_contig1002:56003..56962+ (Pleurocladia lacustris SAG_25_93)
GGTCTATTCAAAAACCAAGTCACCTTTTCTCAGATGTCTCCCGCACGCCT
ACCACCTCGCCCCCTTCCCCCGGGAGGGGGAAATTTCGAAAAATTACCAT
GAAAAATCGAGAATTACCCATAAAACCAATTTTGATGGAAGATACCGCAA
CACACAGAAAACAACAAAGATTTCGAAGAGTTTTAAGTCGTCCGGCCGGC
TGTTGGCCCGTCTTCCGGGTTTTCCCCCGACTATACGCATCGAGCTCTAT
TTATTCCTTTCACCTCGTGAAAGGGCTCGCATTGATTGGCAAAAAAAAGG
AAACCGTTCAATCAGGTGCCATCTCCGTTGTTCGTACACGGAAAATAAAT
GCACCACCACCAGCTGATCGTGCTTATTTGTATCCAAGCTGCAGCATTAT
TTGTAGCCTGGCTGGGTTCGGTTTGGTTGCGACTACGACTGACCTACTGA
CCCACCTACCGCGGCTCTGCTTGCCGTGGTGGTGTGGTTGCAATCCCTTC
TTGGCATTCATTGTGGTTGTCGAGATCATGCCCTCGTTGATCCGCTTGAT
TGTTTGGCTGGCCGGGGCCACGCGCATCCCATCGTGCATGCACGTGAAAA
CAAGAACCAATAGTCTAAATCAAAACACGCGGGACTTTCCGGTGTATAAA
CCCTTCCAACAAACGTGAGACTCCGCTATGCCTTCGTGGTTTCGAGATTC
TCGGCAGGCACGTGCCCCAAAGTCCTTTCTCCTTGTATTTACAACGCAGG
GAAAATCAGCTCACAAATAAAGTCTAAAAGTCAAGGTCAACTAGGCGACG
ATTCTTAGTGAGGGCAATCCTTCTTGAGACGCTGCTGACGTCGACCCTGG
CCACTGCGAGGTGTCCGACATCTCAAAGGGTCTCCAGGCGGCAACAGTCC
GTAGCAGACAGGCAGCGTGCCGGCGGGCATTGTAAAACCCGGGGGTCCTT
AGCGCGACGT back to topCoding sequence (CDS) from alignment at P-lacustris_contig1002:56003..56962+ >mRNA_P-lacustris_contig1002.133.1 ID=mRNA_P-lacustris_contig1002.133.1|Name=mRNA_P-lacustris_contig1002.133.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1140bp|location=Sequence derived from alignment at P-lacustris_contig1002:56003..56962+ (Pleurocladia lacustris SAG_25_93)
ATGAAAAATCGAGAATTACCCATAAAACCAATTTTGATGGAAGATACCGC
AACACACAGAAAACAACAAAGATTTCGAAGAGTTTTAAGTCGTCCGGCCG
GCTGTTGGCCCGTCTTCCGGGTTTTCCCCCGACTATACGCATCGAGCTCT
ATTTATTCCTTTCACCTCGTGAAAGGGCTCGCATTGATTGGCAAAAAAAA
GGAAACCGTTCAATCAGGTGCCATCTCCGTTGTTCGTACACGGAAAATAA
ATGCACCACCACCAGCTGATCGTGCTTATTTGTATCCAAGCTGCAGCATT
ATTTGTAGCCTGGCTGGGTTCGGTTTGGTTGCGACTACGACTGACCTACT
GACCCACCTACCGCGGCTCTGCTTGCCGTGGTGGTGTGGTTGCAATCCCT
TCTTGGCATTCATTGTGGTTGTCGAGATCATGCCCTCGTTGATCCGCTTG
ATTGTTTGGCTGGCCGGGGCCACGCGCATCCCATCGTGCATGCACGTGAA
AACAAGAACCAATAGTCTAAATCAAAACACGCGGGACTTTCCGGTGTATA
AACCCTTCCAACAAACGTGAATGAAAAATCGAGAATTACCCATAAAACCA
ATTTTGATGGAAGATACCGCAACACACAGAAAACAACAAAGATTTCGAAG
AGTTTTAAGTCGTCCGGCCGGCTGTTGGCCCGTCTTCCGGGTTTTCCCCC
GACTATACGCATCGAGCTCTATTTATTCCTTTCACCTCGTGAAAGGGCTC
GCATTGATTGGCAAAAAAAAGGAAACCGTTCAATCAGGTGCCATCTCCGT
TGTTCGTACACGGAAAATAAATGCACCACCACCAGCTGATCGTGCTTATT
TGTATCCAAGCTGCAGCATTATTTGTAGCCTGGCTGGGTTCGGTTTGGTT
GCGACTACGACTGACCTACTGACCCACCTACCGCGGCTCTGCTTGCCGTG
GTGGTGTGGTTGCAATCCCTTCTTGGCATTCATTGTGGTTGTCGAGATCA
TGCCCTCGTTGATCCGCTTGATTGTTTGGCTGGCCGGGGCCACGCGCATC
CCATCGTGCATGCACGTGAAAACAAGAACCAATAGTCTAAATCAAAACAC
GCGGGACTTTCCGGTGTATAAACCCTTCCAACAAACGTGA back to top
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