mRNA_P-lacustris_contig1002.132.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1002.132.1
Unique NamemRNA_P-lacustris_contig1002.132.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: D8LLY2_ECTSI (30S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY2_ECTSI)

HSP 1 Score: 1072 bits (2772), Expect = 0.000e+0
Identity = 583/752 (77.53%), Postives = 639/752 (84.97%), Query Frame = 3 
Query:  141 MRTVCVSLPQAVLLGLAGSSRAFLQSVRPTRFVVPAHKYHAAVSRTRAVQTRVPAV--GRNMRIMSAAVDETETTTDAAVAE-DSIPIAVEIXXXXXDXLAAALEEGDEDANSIALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLSVDGDARKLVLSMRQKPRASSSEQGNVQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMSPDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFG-------DRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQEEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLSMVPAGAYDDRRGGGKTKRGGYGGEGGRSTGRGRGAR*GEL-RFAWARRFRRPRAGVGEGGGGADWQQFLNNYFDDKE 2363
            MRTV V+LP AV+LGLAGSS AFLQSVRPT FVVPAHKY+AAVSRTRA     PA   GR MRIMSAAVDETETT  AA A  +       +XXXXX  ++ A+E+ D+DA SIALEDIVVGEEYEGVINNVV+YGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVL+VDG+ARKLVLSMRQKPR+SS+EQGNVQKYADMLAEDPSQF+ AKVENIVSYGAFF L+DGCSGFVHISQMSP   HV+DVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGE  R+AP++ATKDVS   G DPTEF+KG VSAV DYGLFVNIEGVDGLLHVSKMS DRS+TS+NIHS Y EGQEV +RI+EVN ANNKMSLSMLP TEEADFG+YT++  EEWLEGTVVSIM YGAFVRL G++DGMVHISQLDP GERVDSVYNSVEIGQ V+VRILEADPS++KLRL+MR+  YEG +  + G       DRRG KK K+VE++ ++S EEWISGRV+SITHFGAFV+VDD TDGLLHISQI E+HVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQ  PRG+RGKKDVS+LL RDP+EFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMA GRVDSVED+CEMGQEV VRI+++NTDNNTVNLSMVPAGAYDDR GGG    G +G EGGR  GRG G     +   A+ R               ADWQQFLNNYFDDKE
Sbjct:    1 MRTVRVNLPLAVMLGLAGSSTAFLQSVRPTNFVVPAHKYNAAVSRTRAAAQPRPAAATGRGMRIMSAAVDETETTEAAAEATLEEXXXXXPVXXXXXXPISPAMED-DDDAVSIALEDIVVGEEYEGVINNVVTYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLNVDGEARKLVLSMRQKPRSSSAEQGNVQKYADMLAEDPSQFVSAKVENIVSYGAFFGLEDGCSGFVHISQMSPTGEHVADVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEAPRSAPVAATKDVSHLAGSDPTEFRKGTVSAVADYGLFVNIEGVDGLLHVSKMSTDRSITSENIHSHYEEGQEVEIRIMEVNTANNKMSLSMLPPTEEADFGRYTNVPSEEWLEGTVVSIMNYGAFVRLDGDVDGMVHISQLDPHGERVDSVYNSVEIGQDVRVRILEADPSSRKLRLTMREEGYEGATGGNMGXXXXXXXDRRGTKKAKSVEQFLNLSPEEWISGRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQNSPRGARGKKDVSVLLGRDPDEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINTDNNTVNLSMVPAGAYDDRSGGGYGDEG-FGAEGGR-RGRGGGXXXXXMDSAAFGREDFADTTQXXXXXXXADWQQFLNNYFDDKE 749
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A836CHC1_9STRA (30S ribosomal protein S1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC1_9STRA)

HSP 1 Score: 528 bits (1359), Expect = 1.010e-174
Identity = 325/755 (43.05%), Postives = 448/755 (59.34%), Query Frame = 3 
Query:  141 MRTVCVSLPQAVLLGLAGSSRAFLQSVRPTRFVVPAHKYHAAVSRTRAVQTRVPAVGRNMRIMSAAVDETETTTDAAVAEDSIPIAVEIXXXXXDXLAAALEEGDEDANSIALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLSVDGDARKLVLSMRQKPRASSSEQ-GNVQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMSPDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRD-----PSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQEEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGN--IDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLSMVPAGAYDDRRGGGKTKRGGYGGEGGRSTGRGRGAR*GELRFAWARRFRRPR------AGVGEGGGGADWQQFLNNYFDDKE 2363
            MR V V L  AVLLGL   S AF  +    + VV  H+ + A+S TR+           + +  + V   +   ++A A  ++                             L D+VVG++YEGV++NV+SYGAFVDIG E NGLVHISQLAD FV+N  + V EGD V V+VLS+D   +KLVL+MR  PRA+  +Q  ++  YA++LA DP + +P  VE++V YGAF  L +GCSGF+HISQ+ P    VS+VSDV+TVGQ V VR+R+VD+ L R+N+SLLP        A   +ATKDVS     D   F+ G VSAV DYG FV ++GVDGLLH+SK+    ++T   +  + + GQEVSVRIL V+ A NK+SL+M+    E D     + SPEEW+EG+VVS  TYGAFV L   IDGMVHIS+L     RVD+V + + +G AVKVR++E  P+ +K+RLSMR+      +  G +S      RGA+  K V  YA M +EEW+ G+V S T FGAFV++    DGLLH+S++    V   +D L  GQE++VRVI+VD +  R+GLS+R+ R+         +D+S+L   D   F+PG V S+V YG FV ++    I+GL+H+S+++  RV+ V D+   G +V VR+ EV+ D   VNLSM+P G+  DR    +   G  G     S   G G R         R+  RPR      + +  GGG ADWQ++LN YF+ K+
Sbjct:    1 MRCVSVPLQTAVLLGLVSGSAAFAFAPN-AKVVVHQHRLNRAISNTRS----------RLSVRMSTVAPADLADNSAAASKTL-----------------------------LADLVVGQQYEGVVSNVLSYGAFVDIGAEANGLVHISQLADAFVSNPTEIVAEGDSVSVKVLSIDQAEKKLVLTMRTSPRAAHIQQEADLSPYAEILATDPGRMLPGTVESVVRYGAFVRLAEGCSGFLHISQLKPRAERVSNVSDVVTVGQEVQVRLRDVDQDLKRVNLSLLPLSG-----ATSAAATKDVSPLASADRATFRAGTVSAVHDYGAFVAVDGVDGLLHISKIEEGVALTPAQLRERLSVGQEVSVRILSVDVAANKLSLTMIADKPEPDLSALAARSPEEWIEGSVVSTTTYGAFVHLGDGIDGMVHISELGEG--RVDAVTDVLNVGDAVKVRVIEVVPAARKVRLSMREFGAAEAAPRGAASGGARRGRGARGPKDVSAYAAMGAEEWVEGKVVSFTPFGAFVALPGGVDGLLHVSEMASGRVEAPQDVLSEGQEIKVRVIDVDTEAGRIGLSLRQARRAPV-----SRDLSVLAGVDTTAFVPGTVTSVVSYGCFVALDDTPGIEGLLHVSQLSEDRVEEVGDVVAEGDKVQVRVVEVDLDAGKVNLSMLPVGSAKDRSRNARRGTGEDGAADDASDPFGTGER---------RKSPRPRFNDYEDSALNVGGGEADWQKYLNQYFEKKD 694
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A835YL04_9STRA (30S ribosomal protein S1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL04_9STRA)

HSP 1 Score: 424 bits (1090), Expect = 5.720e-134
Identity = 288/790 (36.46%), Postives = 413/790 (52.28%), Query Frame = 3 
Query:  141 MRTVCVSLPQAVLLGLAGSSRAF--LQSVRPTRFVVPAHKYHAAVSRTRAVQTRVPAVGRNMRIMSAAVDETETTTDAAVAEDSIPIAVEIXXXXXDXLAAALEEGDEDANSIALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLSVDGDARKLVLSMRQKPR--ASSSEQGNVQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDG------------CSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMSPDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGD----RRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQEEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQ-----------EMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIE--GNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLSMVPAGAYDDR--RGGGKTKRGGYGGEGGRS-TGRGRGAR*GELRFAWARRFRRPRAGVGEGGGGA-------------DWQQFLNNYFDDKE 2363
            MR   VSLP AVLLGL   S  F  L S R     VPA ++ AAVS +R          RN R +   +  TE          S+P+A                  +E      L D+ +G  Y+G++NNVV YG FVDIG  VNGLVH SQL++ FV N +  V +GD V VRV+ +D DAR+L LSMR   R  A +    +V  YA  LA DP++FI   V+ ++  GAF +L  G              GF+H SQ+ P    V D  D L+ GQ V VRIREVD +L RI++SLLP  +G    ++  SA +DVS+  G DP EF+ G V ++ +YG+FV ++GVDGLLH S++   R ++   + +++  GQ+VSVR+  V+ A N++SLSM+P     D  ++ ++ P+ W++G V +   +GAFV +   +DG+VHISQL    +   +V + V +G AV+VR++E DP  +                         RRG   VK V +Y     E W+ G V+++  FGAFV++D   DGL+H SQI        ED L  GQ V+VRV+  D +  RL LSM +P +               GS   +DVS+L   DP+ F+ G V S++P+G FV ++  G + GL+H+SE++ GRV+ V ++   G  + VR+ EV+T    ++LSM+  G+  DR  RGGG         +GG S TG G            + R + PR    + G                DW+++LN YF  K+
Sbjct:    1 MRCPRVSLPSAVLLGLVLRSHGFVVLSSTRQ-HIHVPARQHSAAVSCSRC--------SRNRRAVLMYISSTEAV--------SLPVA------------------EERPEKTKLSDLQLGVMYQGIVNNVVDYGVFVDIGASVNGLVHKSQLSNTFVTNPEKIVSQGDSVTVRVIGIDVDARRLSLSMRAGGRRMAHALSADDVAPYAAQLAADPARFIVGTVQLVLRSGAFVALAGGGEGGXXXXXXXXAVGFLHASQLRPRPERVEDARDALSAGQEVQVRIREVDVELRRISLSLLPLPEGGDGGSSGSSAQRDVSRIEGADPAEFRAGTVVSLTEYGVFVALDGVDGLLHYSQIEEGRQLSPAELRARFAVGQDVSVRVRRVDTAANRLSLSMVPPRAPPDLSRFAALPPDAWIDGAVAATTAFGAFVTIGDGVDGLVHISQLSDEDDFPSAVTDVVNVGDAVRVRVIEVDPERRXXXXXXXXXXXXXXXXXXXXXXXXXRRG---VKDVSRYVGADPEAWVDGMVATVVPFGAFVTLDGGVDGLVHASQIC--GGGGAEDALSAGQAVRVRVVGADAERGRLELSMLDPTEAAAXXXXTAGRRQRSGSEAPRDVSVLAGADPDAFVTGTVTSVLPFGCFVALDDVGGLQGLLHVSELSEGRVEDVGEVVAEGDRLEVRVVEVDTSTGKISLSMLQPGSAKDRAHRGGGS--------DGGSSRTGDGGADETDLFGGGSSARKKSPRPRFNDDGASXXXXXXXXXXXXEQDWRKYLNEYFAKKD 742
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A2N1PT36_9BACT (Uncharacterized protein n=1 Tax=Candidatus Wallbacteria bacterium HGW-Wallbacteria-1 TaxID=2013854 RepID=A0A2N1PT36_9BACT)

HSP 1 Score: 215 bits (548), Expect = 1.960e-55
Identity = 153/478 (32.01%), Postives = 243/478 (50.84%), Query Frame = 3 
Query:  492 VGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLA-DEFVANCDDHVKEGDMVRVRVLSVDGDARKLVLSMRQKPRASSSEQGNVQKYADMLAEDP----------SQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVG--VDPTEFKKGIVSAVQDYGLFVNIE-GVDGLLHVSKMSPDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQEEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPR 1883
            VG E EGV+ N+V+YGAFV+I   + GLVH S ++    V N  D VK G+ VRVRVL +D D +K+ L M+Q                  L  DP             +  K+ N+VSYGAF  L+ G  G VH+S MS  +  V    +++  G+ VDVRI E+D    +I+  +               AT D    +G   D  E   G V+ + ++G+FV +E G++GL+HVS +S  + +   N       G EV V++L++   + K+SL +   + +      T     E   GTV ++  +GAFV L   ++G+VHIS +    E++D     ++    ++V++LE + S KK+ L ++    +  +                EKY +      + G V  IT FGAFV ++D  +GL+HISQ+ ++HV  VED + IG  ++V++IE+  D  +L LS+R+  +E+ +
Sbjct:  339 VGTEVEGVVRNIVNYGAFVEIEPGLEGLVHHSDMSWTRRVNNPKDFVKSGEEVRVRVLEIDLDQKKISLGMKQ------------------LTPDPWDDIKIRYKVDDVVKGKITNVVSYGAFVELEPGLEGLVHVSDMSWTK-RVKHPDEIVRAGEDVDVRILEIDVDKRKISFGI-------------KQATADPWSIIGKSYDIGEIYTGKVTNITNFGIFVELEEGIEGLVHVSDISWTQKIV--NPAGVCAIGDEVKVKVLDIKPGDKKISLGIKQVSADPWSSVETEFKVGETYTGTVKNLTNFGAFVELKDGVEGLVHISDMSWT-EKIDHPSQILKSSDKIRVKVLEINTSDKKISLGLKQLVLDPWAV-------------FEEKYHEGMI---VDGEVLRITSFGAFVRIEDGIEGLVHISQLSDKHVEKVEDVVAIGDRIRVKIIEIKDDERKLRLSLRDADEEVSK 765
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A1V5US35_9BACT (30S ribosomal protein S1 n=1 Tax=bacterium ADurb.Bin243 TaxID=1866936 RepID=A0A1V5US35_9BACT)

HSP 1 Score: 201 bits (512), Expect = 4.670e-51
Identity = 151/544 (27.76%), Postives = 275/544 (50.55%), Query Frame = 3 
Query:  495 GEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKE-GDMVRVRVLSVDGDARKLVLSMRQKPRASSSEQGNVQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMS-PDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTE--FKKGIVSAVQDYGLFVNIE-GVDGLLHVSKMSPDRSVTSDNIHSQYTE-GQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQ-EEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEV 2105
            G    G + +   YGAF+DIG  ++GL+HI+ ++   V+N  D V   G  +  +VL +D   +K+ L ++Q  +    E G+  K  ++            V+NI  YG F +L+ G  G +H+S +S   R   +D       GQ +  ++ +V+ ++ +I + +                TKD  + V     E     G + ++ +YG+FV +E G++G +H+S +S  + +   N  S+  + G  + V++L+++    K++L +     +      +    E+ +EG V ++  +GAFV L   I+G++HIS L    +R++     ++ G  VKV+I+E +P+ KK+ LS +  + +  S        GA    TVE            G+++    FGAFV V++  +GLLH S +   +  S+  + L+ G+ ++V V+ +D DN ++ L +++  Q+          ++     D  E + G+V SI  YGAF+  +  I+GL+HIS++A  RVD VE++ + GQ+V V++ EV
Sbjct:  213 GSTVAGTVKSFTEYGAFIDIGG-IDGLLHITDMSYGHVSNPADVVSSIGSQITCKVLKLDRKTKKISLGLKQLSKNPWEEVGDKYKVGEIYE--------CTVKNIADYGVFATLEPGVDGLIHVSDLSWSGRTRPNDFKS----GQKIKAKVIDVNLEIKKIKLGI-------------KQVTKDPWEKVTETYPENTITNGKIKSILNYGVFVELEDGIEGFIHISNISWTKKI---NHPSELLKVGDSIEVKVLKLDLETKKINLGIKQTHVDPWTMVESKFKVEQIVEGKVTNVKKFGAFVELEEGIEGLIHISDLSWT-KRLNHANEMLKTGDPVKVKIIEINPAEKKIALSYKHLTKDPWSDIETRFPIGA----TVE------------GKITHFASFGAFVEVEEGVEGLLHTSDLAWNKKYSDPSEVLKEGETIKVLVLNIDKDNRKMSLGVKQLAQDPL--------IAYKEKMDSGEMLDGKVKSIQEYGAFIEFDDGIEGLIHISQLADERVDKVENVVKAGQQVKVKVIEV 702
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A5C5YTC5_9BACT (30S ribosomal protein S1 n=2 Tax=Posidoniimonas TaxID=2795979 RepID=A0A5C5YTC5_9BACT)

HSP 1 Score: 190 bits (482), Expect = 5.920e-48
Identity = 158/586 (26.96%), Postives = 284/586 (48.46%), Query Frame = 3 
Query:  429 LAAALEEGDEDANSIALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLSVDG-----DARKLVLSMRQKPRASSSEQGNVQKY-ADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIR----EVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMS------PDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQ-EEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLS 2135
            +   L E  ++A+ +A ED+ + +  EG I  V +    VD+G +  G+V  S+  ++     D   + G  VRV V  V+      D R +++  ++K          ++K+ A M +      +   VE  +  G   ++  G + F+  SQ+   R H         +G+ +D  I+    ++DE+   I +S     + E        A K       ++  + +KG+V  + D+G FV++ G+DGLLH++ MS      P   V  D+         E+ V +L ++    K++L +            T       + GTVV++M+YGAFV+L   I+G+VHIS++     R+      V I   V+V +L  +   +++ L M+      Q+  +  D       K  EKY      + ++G+V ++T++GAF+ +++  DGLLH+S +     VS+  + ++ GQEV+ +VI VD D  R+ L +++   + P  +       I     P + + G+V  I  +G FV +E  ++GL+HISE+A  +V++ ED+C +G E+ V+I  V+TD+  + LS
Sbjct:   21 MGVGLLEAPDEADWLAGEDVSINQIVEGKIVRVDAEYVIVDVGYKSEGMVPRSEWEEDDENPADPDPEIGGTVRVLVEDVEDVVGRHDERGMIVLSKRKAE-------KIEKWMAVMESVHEGDVVTGTVERKIKGGLLVNI--GVNVFLPASQVDIRRPH--------DIGEYIDKEIQCIVLKIDEQRRNIVVSRRSLIEQE-------RAKKKAELLKELNVGDLRKGVVKNIADFGAFVDLGGIDGLLHITDMSWGRISHPSELVKIDD---------ELEVMVLHIDYEKEKIALGLKQKQPSPWDDVSTKYPVGSRVTGTVVNVMSYGAFVKLEDGIEGLVHISEMSWT-RRISHPSELVNIDDQVEVVVLGINEEKQEISLGMK------QTQDNPWD-------KVAEKYPP---GQLVTGKVRNLTNYGAFIEIEEGIDGLLHVSDMSWTRKVSHPSEVVEKGQEVECQVISVDTDRRRIALGLKQMEDD-PWAT------DIPSRYQPGQLVQGKVTKITNFGVFVGLEDGLEGLLHISELADEKVENPEDVCNVGDEIEVKILRVDTDDRKIGLS 549
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A3M1RCY3_9BACT (30S ribosomal protein S1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1RCY3_9BACT)

HSP 1 Score: 188 bits (478), Expect = 2.960e-47
Identity = 153/566 (27.03%), Postives = 277/566 (48.94%), Query Frame = 3 
Query:  480 EDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRV-------LSVDGDARKLVLSMRQKPRASSSEQGNVQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMS------PDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQ-EEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLS 2135
            E+I V    EG I  V      VD+G +  G++ +++ ++E     ++  K GD + V V       L  D     + LS R+  R  +       +  + + E     +  KV   +  G    +D G + F+  SQ+   R    D+++   + + +   + ++D+    I +S     + E        A K       ++P + +KG+V  + D+G FV++ G+DGLLH++ MS      P   V+ D+         E+ V IL+VN    K++L +   T                ++GTVV++MTYGAFV+L   I+G+VHIS++    +R++     V++G  ++V +L  D   +++ L ++      Q+  +  DR         EKY + S    + G V ++T++GAF+ +++  DGLLH+S +     +S+  + LQ GQE++ RV+ VD +  R+ L +++  ++         +  I     P + + G V  I  +G FV +E  ++GL+HISE+A  +VDS E++ ++G+E+ V+I  V+TD   + LS
Sbjct:   38 EEIAVNNIVEGKIVRVEKEFVVVDVGYKSEGIIPLNEWSEE-----EEPPKVGDTIEVLVEELESSFLDSDDYYGMITLSKRKAERIKAW-----MRVMESVKE--GDVVTGKVTRKIKGGLL--VDIGVNVFLPASQVDIRRPR--DIAEY--IDKEIQCVVLKIDQARRNIVVSRRALIEAE-------RAEKKAKLLAELEPGQIRKGVVKNIADFGAFVDLGGLDGLLHITDMSWGRIGHPSEMVSIDD---------EIEVVILDVNREKEKVALGLKQKTPSPWEDVEVKYPVGSRVKGTVVNVMTYGAFVKLEDGIEGLVHISEMSWT-KRINHPTEVVQVGDEIEVVVLRIDKEKQEISLGIK------QTQENPWDR-------AAEKYPEGSI---VKGVVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKISHPSEILQRGQEIECRVLSVDQNRHRIALGLKQLTED-------PWEHDIPQRYAPGQIVKGTVTKITNFGVFVGLEDGLEGLLHISELADHKVDSPEEVVKVGEEIEVKILRVDTDERKIGLS 545
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A518DMP7_9BACT (30S ribosomal protein S1 n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DMP7_9BACT)

HSP 1 Score: 187 bits (476), Expect = 5.730e-47
Identity = 160/566 (28.27%), Postives = 284/566 (50.18%), Query Frame = 3 
Query:  474 ALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLSVDGDARKL-----VLSMRQKPRASSSEQGNVQKYADMLAE-DPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSL--LPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMSPDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSM---LPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQ-EEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLS 2135
            A +DI + +  EG I  +      +D+G +  G + IS+  +E           GD+V+V V  ++ +         +LS+      S ++   + K+ +M+      Q +   V   +  G    +D G S F+  SQ+  D     D+ D   +G+VV   + ++DE    I +S   L   Q E VR   L   ++          + + G+V  + D+G FV++ G+DGLLH++ MS DR    ++        QE+ V IL ++    K++L +   +P+  +    KY   S  +   G VV++M+YGAFV+L   I+G+VHIS++    +RV+   + V+IG  + V IL  D + ++L L M+      Q++P + D      V+T+           ++G+V ++T++GAF+ +++  DGLLH+S +     +S+  + L+ GQEV+ +V+ VD D  R+ L +++  Q+          V I     P + I G V     +G FV +E  ++GL+HISE+A  +V++ E+I ++G E+ V+I  V+T+   + LS
Sbjct:   40 ATDDIDLNQIVEGRIIRIADGAVLIDVGFKSEGTIDISEWDNEPTPQV------GDLVKVLVEDLEDETGATDDPFGMLSI------SKTKAEKILKWKEMMESVHEGQVVTGDVVRKIKGGLL--VDIGVSVFLPASQV--DIRRPGDIGDF--IGRVVQCEVLKIDETRRNIVVSRRSLIEKQREEVRTQLLQELEE---------GQVRPGVVKNIADFGAFVDLGGIDGLLHITDMSWDRI---NHPSEMVAIDQEIEVMILNIDREKQKIALGLKQKMPSPWDNVVEKYPVNSVHK---GEVVNVMSYGAFVKLEPGIEGLVHISEMSWV-KRVNHPSDLVDIGDMIDVMILGVDKAGQQLSLGMKQT----QANP-WDDVIHRYPVETI-----------VTGKVRNLTNYGAFIELEEGIDGLLHVSDMSWVRKISHPSEMLEKGQEVKCKVLNVDQDRRRIALGLKQLDQD-------PWSVDIPSKYQPGQVIKGVVTKTTNFGVFVGLEDGLEGLLHISELADHKVENPEEIVKVGDELEVKILRVDTEERKIGLS 548
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A2E3DKS4_9PLAN (30S ribosomal protein S1 (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3DKS4_9PLAN)

HSP 1 Score: 187 bits (475), Expect = 6.370e-47
Identity = 147/538 (27.32%), Postives = 267/538 (49.63%), Query Frame = 3 
Query:  546 VDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLSVD------GDARKLVLSMRQKPRASSSEQGNVQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMSPDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPEEWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQ-EEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLSM 2138
            +D+G +  G + +S+  +E     ++  K GD V+V +  V+       D   +V   ++K     +    ++K       D  Q +   V   +  G    +D G + F+  SQ+  D    +D++D   +GQ V+  + ++DE   R N+ +      E  R A   A         +   E +KG+V  + D+G FV++ G+DGLLH++ MS +R      + S     QE+ V IL+++    K++L M   +     G          ++G VV++M+YGAFV+L   I+G+VHIS++    +R++     V+IG  + V IL  D   ++L L M+      Q++P           + VEK   + S   ++GRV ++T++GAF+ +++  DGLLH+S I     + +  + L+  QEV+ +V+ +D++  R+ L +++   +            I     P + I G V  I  +G F+ +E  ++GL+HISEM  G V+  E + ++GQE+ V++  V+T++  + LS+
Sbjct:   61 IDVGFKSEGSISLSEWGEE-----EEQPKVGDTVQVLIEEVEDEFGPANDPHGMVSLSKRKAEKILAWTAMMEKI------DEGQIVKGLVTRKIKGGLL--VDIGVNVFLPASQV--DIRRPNDIADY--IGQEVECEVLKIDE--ARRNIVVSRRSMIERQRRADREAL-----LAELSENELRKGVVKNIADFGAFVDLGGIDGLLHITDMSWERIGHPSEMVSI---DQEIEVMILKIDHEKEKIALGMKQKSANPWEGIEERYPVNTKVQGEVVNVMSYGAFVKLEAGIEGLVHISEMSWT-KRINHPNEMVQIGDEIDVVILSIDKGGQQLSLGMKQT----QANP----------WEEVEKRYPIDSV--VNGRVRNLTNYGAFIELEEGIDGLLHVSDISWTRKIGHPNEVLEKSQEVECKVLSMDIERRRIALGIKQLDAD-------PWTAEIPERYQPGQKITGNVTKITNFGVFIGLEDGLEGLLHISEMTDGEVEDPETLVQVGQEIEVKVLRVDTEDRKIGLSL 547
[Close]
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Match: A0A5C5ZTU9_9BACT (30S ribosomal protein S1 n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZTU9_9BACT)

HSP 1 Score: 187 bits (476), Expect = 6.860e-47
Identity = 167/612 (27.29%), Postives = 292/612 (47.71%), Query Frame = 3 
Query:  423 DXLAAALEEGDEDANSIALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQLADEFVAN---CDDHVKE------------------GDMVRVRVLSVD------GDARKLVLSMRQKPRASSSEQGNVQKYADMLAE-DPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRGHVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSATKDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMS------PDRSVTSDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPE-EWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQAVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYADMSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQ-EEHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEF-----IPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMVRIAEVNTDNNTVNLS 2135
            D L A +EE  ++A+ +  EDI V +  EG I  V      +DIG +  GLVH ++   EF  N     D   E                  G  VRV V  V+       +   LVLS R+  +        ++K+  ++ +      +  KV   +  G    +D G + F+  SQ+   R H  D+ + L   + ++  + ++DE+   I +S     + E        A K       +   + + G V  + D+G FV++ G+DGLLH++ MS      P   V  D+         E+ V IL ++    K++L +   T  + + K  +  P    ++GTVV++M+YGAFV+L   I+G+VHIS++    +R+      V+I   V+V +L  +   +++ L M+      QS+P           K  EKY   +    ++GRV ++T++GAF+ +++  DGLLH+S +     VS+  + ++ GQE++ +V+ VD D  R+ L +++             D     N  PN +     + G+V  I  +G FV +E  ++GL+HISE+A G++++ E++C +G E+ V++  V++D   + LS
Sbjct:   15 DDLIAVMEEAPDEASWLQGEDITVNKIVEGTIIRVDDEYVVIDIGYKSEGLVHRNEWEPEFDNNQYSSGDETAEXXXXXXXXXXXXXXXXXVGQKVRVLVEEVEEVSGRHDERGMLVLSKRKAEK--------IEKWLAVMDKVHEGDVVTGKVMRKIKGGLL--VDIGVNVFLPASQVDIRRPH--DIGEYLD--KEIECMVLKIDEERRNIVVSRRSLIEQE-------RAKKKAELLKHLSVGDLRTGQVKNIADFGAFVDLGGIDGLLHITDMSWGRISHPTEMVKIDD---------EIEVMILHIDYEKEKIALGLKQKT-ASPWEKVPATYPVGSRVKGTVVNVMSYGAFVKLEDGIEGLVHISEMSWT-KRISHPSELVQIDDEVEVVVLGINQEKQEISLGMKQT----QSNPWD---------KVAEKYPPGAQ---VTGRVRNLTNYGAFIEIEEGIDGLLHVSDMSWTRKVSHPSEAVEKGQEIECKVLSVDTDRRRIALGLKQ------------LDEDPWANDIPNRYQSGQLVKGKVTKITNFGVFVGLEDGLEGLLHISELADGKIENPEEVCSVGDELEVKVLRVDSDERKIGLS 566
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1002.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY2_ECTSI0.000e+077.5330S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CHC1_9STRA1.010e-17443.0530S ribosomal protein S1 n=1 Tax=Tribonema minus T... [more]
A0A835YL04_9STRA5.720e-13436.4630S ribosomal protein S1 n=1 Tax=Tribonema minus T... [more]
A0A2N1PT36_9BACT1.960e-5532.01Uncharacterized protein n=1 Tax=Candidatus Wallbac... [more]
A0A1V5US35_9BACT4.670e-5127.7630S ribosomal protein S1 n=1 Tax=bacterium ADurb.B... [more]
A0A5C5YTC5_9BACT5.920e-4826.9630S ribosomal protein S1 n=2 Tax=Posidoniimonas Ta... [more]
A0A3M1RCY3_9BACT2.960e-4727.0330S ribosomal protein S1 n=1 Tax=Planctomycetes ba... [more]
A0A518DMP7_9BACT5.730e-4728.2730S ribosomal protein S1 n=1 Tax=Lignipirellula cr... [more]
A0A2E3DKS4_9PLAN6.370e-4727.3230S ribosomal protein S1 (Fragment) n=1 Tax=Planct... [more]
A0A5C5ZTU9_9BACT6.860e-4727.2930S ribosomal protein S1 n=1 Tax=Pseudobythopirell... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1002contigP-lacustris_contig1002:39668..54355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1061.6
Seed ortholog evalue1.6e-307
Seed eggNOG ortholog2880.D8LLY2
KEGG koko:K02357,ko:K14792
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0264@1,COG0539@1,KOG1070@2759,KOG1071@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-14_002090.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03012,ko03029
Exons12
Model size2363
Cds size2106
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1002.132.1prot_P-lacustris_contig1002.132.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1002 39808..54238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.5206015-UTR-P-lacustris_contig1002:39667..398071622815269.5206015-UTR-P-lacustris_contig1002:39667..39807Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 39668..39807 +
1693493440.5793211-UTR-P-lacustris_contig1002:39667..398071693493440.5793211-UTR-P-lacustris_contig1002:39667..39807Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 39668..39807 +
1622815269.6721478-UTR-P-lacustris_contig1002:54238..543551622815269.6721478-UTR-P-lacustris_contig1002:54238..54355Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 54239..54355 +
1693493440.7328248-UTR-P-lacustris_contig1002:54238..543551693493440.7328248-UTR-P-lacustris_contig1002:54238..54355Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 54239..54355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.5321121-CDS-P-lacustris_contig1002:39807..401131622815269.5321121-CDS-P-lacustris_contig1002:39807..40113Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 39808..40113 +
1693493440.588565-CDS-P-lacustris_contig1002:39807..401131693493440.588565-CDS-P-lacustris_contig1002:39807..40113Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 39808..40113 +
1622815269.5421247-CDS-P-lacustris_contig1002:41256..413731622815269.5421247-CDS-P-lacustris_contig1002:41256..41373Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 41257..41373 +
1693493440.6046796-CDS-P-lacustris_contig1002:41256..413731693493440.6046796-CDS-P-lacustris_contig1002:41256..41373Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 41257..41373 +
1622815269.5523055-CDS-P-lacustris_contig1002:41900..419811622815269.5523055-CDS-P-lacustris_contig1002:41900..41981Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 41901..41981 +
1693493440.6131644-CDS-P-lacustris_contig1002:41900..419811693493440.6131644-CDS-P-lacustris_contig1002:41900..41981Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 41901..41981 +
1622815269.5673168-CDS-P-lacustris_contig1002:42730..428561622815269.5673168-CDS-P-lacustris_contig1002:42730..42856Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 42731..42856 +
1693493440.6209419-CDS-P-lacustris_contig1002:42730..428561693493440.6209419-CDS-P-lacustris_contig1002:42730..42856Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 42731..42856 +
1622815269.577707-CDS-P-lacustris_contig1002:43367..434691622815269.577707-CDS-P-lacustris_contig1002:43367..43469Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 43368..43469 +
1693493440.629381-CDS-P-lacustris_contig1002:43367..434691693493440.629381-CDS-P-lacustris_contig1002:43367..43469Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 43368..43469 +
1622815269.5906112-CDS-P-lacustris_contig1002:44004..440851622815269.5906112-CDS-P-lacustris_contig1002:44004..44085Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 44005..44085 +
1693493440.6380854-CDS-P-lacustris_contig1002:44004..440851693493440.6380854-CDS-P-lacustris_contig1002:44004..44085Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 44005..44085 +
1622815269.6015952-CDS-P-lacustris_contig1002:45726..459441622815269.6015952-CDS-P-lacustris_contig1002:45726..45944Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 45727..45944 +
1693493440.6566541-CDS-P-lacustris_contig1002:45726..459441693493440.6566541-CDS-P-lacustris_contig1002:45726..45944Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 45727..45944 +
1622815269.6116953-CDS-P-lacustris_contig1002:46318..464551622815269.6116953-CDS-P-lacustris_contig1002:46318..46455Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 46319..46455 +
1693493440.6656787-CDS-P-lacustris_contig1002:46318..464551693493440.6656787-CDS-P-lacustris_contig1002:46318..46455Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 46319..46455 +
1622815269.6214375-CDS-P-lacustris_contig1002:52068..522411622815269.6214375-CDS-P-lacustris_contig1002:52068..52241Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 52069..52241 +
1693493440.684412-CDS-P-lacustris_contig1002:52068..522411693493440.684412-CDS-P-lacustris_contig1002:52068..52241Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 52069..52241 +
1622815269.6337783-CDS-P-lacustris_contig1002:52640..532281622815269.6337783-CDS-P-lacustris_contig1002:52640..53228Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 52641..53228 +
1693493440.6998785-CDS-P-lacustris_contig1002:52640..532281693493440.6998785-CDS-P-lacustris_contig1002:52640..53228Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 52641..53228 +
1622815269.6434894-CDS-P-lacustris_contig1002:53492..536151622815269.6434894-CDS-P-lacustris_contig1002:53492..53615Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 53493..53615 +
1693493440.710397-CDS-P-lacustris_contig1002:53492..536151693493440.710397-CDS-P-lacustris_contig1002:53492..53615Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 53493..53615 +
1622815269.6547253-CDS-P-lacustris_contig1002:54184..542381622815269.6547253-CDS-P-lacustris_contig1002:54184..54238Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 54185..54238 +
1693493440.7241688-CDS-P-lacustris_contig1002:54184..542381693493440.7241688-CDS-P-lacustris_contig1002:54184..54238Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 54185..54238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1002.132.1

>prot_P-lacustris_contig1002.132.1 ID=prot_P-lacustris_contig1002.132.1|Name=mRNA_P-lacustris_contig1002.132.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=702bp
MRTVCVSLPQAVLLGLAGSSRAFLQSVRPTRFVVPAHKYHAAVSRTRAVQ
TRVPAVGRNMRIMSAAVDETETTTDAAVAEDSIPIAVEIPVAIEDPLAAA
LEEGDEDANSIALEDIVVGEEYEGVINNVVSYGAFVDIGTEVNGLVHISQ
LADEFVANCDDHVKEGDMVRVRVLSVDGDARKLVLSMRQKPRASSSEQGN
VQKYADMLAEDPSQFIPAKVENIVSYGAFFSLDDGCSGFVHISQMSPDRG
HVSDVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEPVRAAPLSAT
KDVSQFVGVDPTEFKKGIVSAVQDYGLFVNIEGVDGLLHVSKMSPDRSVT
SDNIHSQYTEGQEVSVRILEVNEANNKMSLSMLPATEEADFGKYTSISPE
EWLEGTVVSIMTYGAFVRLAGNIDGMVHISQLDPAGERVDSVYNSVEIGQ
AVKVRILEADPSTKKLRLSMRDPSYEGQSSPSFGDRRGAKKVKTVEKYAD
MSSEEWISGRVSSITHFGAFVSVDDVTDGLLHISQIQEEHVSNVEDHLQI
GQEVQVRVIEVDVDNCRLGLSMREPRQEMPRGSRGKKDVSILLNRDPNEF
IPGRVVSIVPYGAFVNIEGNIDGLVHISEMAAGRVDSVEDICEMGQEVMV
RIAEVNTDNNTVNLSMVPAGAYDDRRGGGKTKRGGYGGEGGRSTGRGRGA
R*
back to top

mRNA from alignment at P-lacustris_contig1002:39668..54355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1002.132.1 ID=mRNA_P-lacustris_contig1002.132.1|Name=mRNA_P-lacustris_contig1002.132.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=14688bp|location=Sequence derived from alignment at P-lacustris_contig1002:39668..54355+ (Pleurocladia lacustris SAG_25_93)
CTAGGTTTCTCTTTCACGTGGTTGACCTTTCAAGCACCAGCCCAATCCAC
GACCGCGCCCCTCGATCTGCCAGTCACCTGTCGTCCCCTCCATCTCTTTC
TCTTTCTCTTGTGAGGAGAGACCATACCACGGCAGAGAGGATGAGGACGG
TGTGCGTTAGCCTCCCCCAGGCTGTATTGCTGGGCCTTGCCGGGTCGAGC
AGGGCCTTCCTGCAGAGCGTGCGGCCGACGCGCTTCGTGGTACCGGCGCA
CAAGTACCACGCGGCGGTGTCCCGAACGCGCGCAGTGCAGACCCGCGTCC
CTGCCGTGGGCCGAAACATGCGCATCATGTCGGCGGCCGTAGACGAGACC
GAGACAACGACAGATGCTGCTGTAGCCGAAGACTCAATCCCGATTGCCGT
AGAGATCCCGGTCGCCATCGAGGACCCCCTCGCTGCTGCCTTGGAGGTAA
GAGGTGTTCGAGCTTGCGAGAGAGGATCAGAGATAGTGAAGTCTTCGGAG
GATAGAGCTCGTTTTTTCTCGAGTGAGATGTCCACACGAGTGTATTTTTG
CACCTGCCACGTGCCATGATGTTGCTGGCTTTCGTGTGTGGACGTGAGGT
ACGATTTCGGCGGCGCCGTGCGTGGCGCGCGCCTGTGTGTTTGTGACGAA
CCCTCGCCGCTGGCCTCGACAGCACGAAGTGTGCTCTGGGCGATGGCGTG
CTCTTCTTACGTGATGGTTGTGGAGCAACGACCCGCTGCCCGTGGATGTT
TGGCACGTCAGCGAGGACGTTGTTGTTGCACTCGTCATGTTTTTTTTTCA
CACGAGCCGCGTGTATGTTCGGGTGAAGCTCCGAGGGCCGCAGATTAACA
CATACACATCATCTGTGCATCGTGACGATCATTTCTTAAGGCAGGCACCA
ACTGACTCAGTCACCGGTACTTGGCCCATACAGTGGGTAGTTGGTAGTGC
AGCGTCCACCGACGATCAGATGCGGCTATCACGGCGTGTGAGGAGACACA
TTCTTGAAAATCAAGGTCGAGGCACACACCCTGACCGCACGAAAAAACCC
CTACAATTGTAGCCGAAAAATTAAGTTGGAAAAAACCCTGAACGCTGTCG
TGGTTGAAGTCTTTCTCGACTGTCGATAGAAAACGAAGGTTGAGCGTACA
TGCATGCCAAACAACCAGCTGGCTACGATCGTGACCCAGGAAGCGGGTGC
TGCTTCTGGCTGTTGTGTATGCGCTTCGAGGTTGTCCCACCCAGGCTGAC
CCTTCAGCCAACCCTTCCTTGCATTCCCGGTGTGTCTCCTTCATTCGAAT
GGCACACAAACGCCGCCTGACGTGTGTTTGTATGTGTGGTGTAACAATAG
CTCCGCTGTCTTCATCAAGAGGCACATTCCTTGGGCAGGAGGAGCTGGAC
TCGCGTTTTTCCCATCCGTAGCGTTCAAGATGGTAGTCACACGCTGCTTG
CTGGATGTCACCGGTTTGTGATATCCGATCTTGTCACAGTGGTCGTGTTT
TTTTTTTTGCACTTACCCAAAATGAATTCATGCTACATGTATATAATGTG
GATCACGCATCAATTCATGTTGTATGTGGTAAAAAATAGGAGGGTGACGA
GGACGCGAACTCCATCGCGCTGGAGGACATTGTGGTTGGCGAGGAGTACG
AAGGCGTGATCAACAACGTCGTCAGCTACGGCGCGTTCGTTGACATAGGC
ACGGAGGTGCGTGTTCATTCAACATCGTCGAAACGGCGGCAGACTTGACA
GACTTGCGAAACTGCTGCTCTACACACACTGTCGCCTCGTCTGTCCACGA
GGTCGATCTTAAGTAGCTTGCACAACCTCCGCGTACGGTTTCCATGGCAG
ACAGCAGAGGTCGAGCGTTTGATATTCGGCACATTTATCGTTTGAATACA
GCAGCTGCTGTGTGTACAGCCGGGAGACTTGAAGGTGGGGATGGCCAAGA
ACTAAGAGCCGTCGCGGCCATACATATCTTCATGAAACCCTTATTCACGC
GGTAAACCCTCGAAGGGTCAGGATACATGACAAGCAAAGACCGCTCTCCT
TTGCTCTTGCCACTTCCCACCAACTAACTACTTTCGTTTTTTGTTAAACC
GAGCGAGTTCCTGCCTCCCTTACTGCAACCTGTCGTCGCGCTTCTGTCCG
CCCCCTTGGGTTACATGTCGCGTAAGTGATAAAAGTGTTGACCATATTAT
TAAAACGCATGCGCCATCTTGAACAATTTCAAGGTGAACGGGCTGGTTCA
CATCTCTCAGCTGGCCGATGAGTTCGTGGCAAACTGCGACGACCACGTCA
AGGAGGGAGACATGGTGAGACCTGGGTACCTGGGTTTTGTTTTCGCCTGA
AAAAATCAATGTTACTAATCGTCGGTTCGGGTGGTGTTGTCGACTGAAGG
TGTTGTCTGTGCTGTGGTCGGGAACCCGTCGTAGCCTTCACCTCATGTCC
CCGTGACATTATATGCATTCCTCGATTCATGTATCGATGCTGCATAAATG
CCACCTGAACAAACGCGTGCGCCCCACTATCTAGACTGCGTGCAGCGCAG
CTCCTGCCATATGAACAGCGTGTGTGTAGGCAACGCTCGAGCTCCGAAAA
AGTGCCACTTGCAAAAAAGTTGGACCTACGCTTTGAAAATCAAGTCCCAT
GGCTAAAGTTTGGCAGGCCCCAACCCCACGCCCCCTTATAGAAAGCTGGA
AAGTGCAGGGATGATAAAGCACCTATTATAGCCAGTGTGCTACCGTCCCA
TGTCATTTCGTTCGAACGTGGTGCAAATATCGTGCTGACACGAAACACAC
GACAGCGGACAGGGGCAGCACTTTCCACCCTGTGGCGCCAATGTCGGAGC
CGTCCCTGTATGTTGCCTCGTATCCTTCATCCCGCCCTTACGCTCTCATC
GTTTCTATGTACTACCAATTATTCCCCAGGACTGGGGCTGTTGAACATGT
TTTTTCTGCCTTCCTTCACCGTCCCCCGCCGCCGCCAGCGCGCAACCATG
TACGTTTCCCACCCGTCGACCAACAAACAAAAAAACTCGAAAAAACACAT
GTCGTGTACACAGGTGCGTGTGCGCGTGCTAAGCGTGGACGGCGACGCAC
GCAAGCTTGTGCTCTCCATGCGCCAGAAGCCGCGCGCGTCGAGCAGCGAG
CAGGGCAACGTCCAGAAGTACGCGGACATGCTCGCGGAGGTGACGAGAAA
AAGAATTCCGACAGTTTAGAGATGGTTTGGAGGTGTACCGCCGTGCCATG
CCCCTTCGCGTGTCCGTCGAGGTATCGAGGTCTCGATTGATGTTGTGCTG
TAGGATCCGCCGTTGCCATTTGTCCCATGCTTTGCTGCAGAGAATCTGAA
GTCGTGGACTTGACCGACATTACGACCACGGGGACAATTTTTTGATGATG
CTTGTTGCTCGCTCTTCGAAAGAAGTTTTAGTAGTAGTTCGGGTCGTCGC
CGCTGGTGTAAGGCTCTTTTGGGGAGAGGCTGTGTGGCTCCACGTAGAAT
CGATCGCTTGCCGCCCTGCTGCCCCAGTTTGACCTGCTCGGGGTCTCTTC
GTGAGGCTTCCGCCGTGCGACACACAACAGGTCGACAATTATAATACTAT
CATATCTGGCTCGTTTTTGCTCCCGGGTATGTTAGACGCAGTATAGCGCA
AAAAGGCTCACATCTTGTGTTTCTGCATTATGGTGGTCGTTGTTTTTCAG
GACCCGAGCCAGTTCATACCCGCCAAGGTGGAGAACATCGTCAGCTACGG
CGCTTTCTTCAGCCTCGACGACGGCTGCTCCGGCTTCGTGCACATCTCCC
AGGTCCGCAAAACCCGAACGTTTGCAGCGGGCGTCAGGCCTCGCGAAAAC
GCGTCGTGTGCCTAAAATGTCGCGCTGTGTAGCGATTCAATTTTTGTTGC
TCGTTCCAACCAAGTGCCGAGGAGCTCGCTCGTTTCATGCGTTTCTTGTG
ATTCACTTGAGTTGGGTACTTGACGCCAATTTGAGGCAAGCTTGTTGGTT
GGACCTTTTGGTTTTGCGCATGGTGGTTGACTCGATAGCGTTTTTTTGCG
GAATTTCTTCATGCATTTCCCACAATTTCTTCATGCCTTGTCTACGTCTG
TAAAACCCACGATTGGTTTGCTGTTCGTGGCGGGTGCTAAAAGCCTCCGG
TTCTGTATCCTCATTCTCAGCTTCCCCGACTATCGTTCTCGTTTTGGCGT
TGTCGAGTTTCAAGATATTGGTCATTTTGCAACGCAGACTAGTCTTTCTA
CCCCTCCCTCCCCGTTCCGCTTTTTTCCACTCGACTCTCTTGACACGTTT
CATTTTGCCGTTTTCCATGTTTGCATTGATTTTGCAGATGTCCCCGGACC
GTGGGCACGTATCAGACGTGAGCGACGTCTTGACTGTCGGCCAGGTTGTG
GACGTGCGCATCCGCGAGGTACGTGAAGTTGTGTTGTCACCTCACCTGTT
GTCGACGCAAAGTTGCCACCTTTCGGTGTGTTTTGACGCGCCCGCCGGGG
TCACACAGGGAAGGCCACGGTTGACCAAGTTTGCTGTTTCCGGTGGGACA
ATGGGCGACCACTCATCTGATGGAAAAAACAAACCTTCTTTGTGGTGACG
TTGGAGACAGAGATGTCACTTTTTCAAACCTTTGTTGTCTCAACCAGCAT
CAATTATGTCGTGAGGTTGGACAACAGCACCATAATCTCAATGGTAGACA
CGTAAACACGAACTGACATATATATATTTTTTTTCCAAGGCGTGACAACT
GGAGGCAGATTTGTCCATAGCACCAGCCAGCGGAAGGGAGTTTTTTCCAC
CCATGCCTTGAATTGAAAACTGTCATGGGTGCATTTTCTTTTTTTTTGTC
CGTCGTCCATCCACAGTCATACACTTGTATAGTACTGCGGTTCGTTCATC
TGGGTAGTTGTCGTTTCGTCAGGAATGGAAATGGACCAACACGCCTAAAT
TGCTCTTGCGCAAGATGTGGTTCATCACTACGCGGCGCGTAATCATAGCT
CAGATGCCGAGTTGGTCTGAAGAAATTCCGCAACTACAAACACAGACATT
ATCGAACCAATTAATGGTATTGTACTGGATCCGTGATATAACTTGGCCAT
TCTACAGACATTTCATTCATTTGTATTTTCGACCCACGGCTTTAGACCCC
GTGGCTGAAGATAGGAGGTGCTGTGAATGGCACTATTCAAGGCCTCGTAG
ATTGTCGTTCCCTCAGATACCCTGTCAGATATCTCCCATAGTTCCCCGAA
CCAGTTCTGGGACCTGACTCGCTGTGTCAGATTTGAGAGAGCCGGTACGG
GCAAGGAATCCACCTGAGGGCGGACCCATTTCCTCGCACCGGGCTCTTAC
TCCCGTTTCGTACCCGTCCCACCTCTCTCACTCCCGTCGCTGACGCCACT
ATGAGTCGCTAGACCCCACGGGTTCGCTTTGCGGCAGGGTTCTCTCTATG
TATGTGTGGTGTGGAGGACACACCGAATCCGACCTCTCGTGAGAGAAGTG
GGACGGGTACGGAACGGGAGTAAGAGCCCGGTGCGAGGAAATGGGTCCGC
CCTCAGGTGGATTCCTTGTCAGTATCGGCTCTCTCAAATCTGACACAGCG
AGTCAGGTCCCAGAACTGGTTCGGGGAACCATGGGAGATATCTGACAGGT
TATCTGAGGGAACTTGACAATCTACGAGGCCTTGAATAGTGCCATTCACA
GCGTATGCGGCGCACGGTGGCGCGAATTCAAATAAGTCTACCGTGGTCTT
GCCCAGCCGTCGCTACTCCTACCTCTGTTGCCGTAAAAAATACCCGAGAT
GAAGCAAATCATGGAACGCTCAAAAATGCCATGTCATGGTCCACTATCCT
ATCCTTGTTCACCCCGATCGTTCCCAGACGCTTTCCCAAAACATCGACGT
CACGAGCTGGGATGACGTCATACGCACTCTCGAAATCAGCGACGTCACCT
ACGTCTCCGACACCATGCCCGTTGTCCCCGTGTCCCTGGGCTGACCTCAC
CCCGCTCCCTCTAACACGGTGAAATCCCCTTGCTCGACTGCCACGCCTCC
GCGTTGCAGGTCGACGAGAAGCTCGGTCGCATCAACATGAGCCTTCTTCC
GTACGGCCAGGGCGAGCCCGTCCGCGCAGCCCCCTTGTCTGCCACCAAGG
ACGTATCCCAATTTGTGGGTGTGGACCCGACGGAGTTCAAAAAGGGCATC
GTGTCCGCCGTGCAAGACTACGGGCTGTTCGTCAACATCGAGGGCGTCGA
CGGCCTCTTGCACGTCTCGAAGATGAGGTGTGGTGTGTGTAGATATGCAT
ACCAATCTTGTTGCTTGAATGGATATCGATTTGTAACGGTACGCTGACGC
CAACTGCGAGATTCGTGGCTCCGGGTTGTACGTTCCGGGGTGGGTGGCGT
GGGTTACACAGGAATCAACTCTTGTCAACGATGGTGTAAAGGTGTTGTTA
CCGTTTTTCACCAACACGAGGTTCTGTGATTCGACGGCTTGTATCGACGT
ACAGCAGTAGCTCGCTATGATGGCCTCCTTTGGCTGTTGCTATCATGCAG
CGTTTTTTCCTTTCCGTTGTTTTCCGACGCAATTTTTCGGCTTTTGTCTT
TGTCCTCTGCACTGTTGATGGTTGGTCGGGGTCTCTGTTGGGCGTCGAAA
GCCCTGACCGCTCGGTCACCTCGGACAACATCCACTCACAATACACCGAG
GGACAGGAGGTTAGTGTCCGAATCCTGGAGGTTAACGAAGCCAACAACAA
GATGTCGCTCAGCATGCTGCCCGCCACGGAAGAGGCCGGTGAGTTACATG
AGACTAGTGTCGGGGGTGTTCGGTTTATCGCGTGAGTTTTATGATTTCGG
ATGCGAGTACCCAGTGTCTCTGAGAACCCACGCTCCAACTTACATGAGGA
AGTTGTCAACCCGCATCCCGCTCAACACCCACGTCACATCTCCTCCCGCC
TGCGGAAATTTACGAGAATTCGAACAATTGTCCCGAATCAGGAGGGTTCG
AATCCTTGTATGCTCAACAGTCGGGCATGAGTCCTCTCGTCAGCAGTGGT
GTGACGTGTGTGTGTGCGGGGTATGCACACGATGGACGGACATAATGCTT
TGTAAAGAGGCAATGAAATGACAGGTCTCCGAAATTACAACGGAAAAATT
TAGAGGGCCGGTGCACCGCACCGCACAAGCGCAGAAGCACACCTCATAAC
AGGGAAACACGCCACTCTAAGTTGGCGTACAGATGCAGCGACAGTCGGCG
TTACAGAAATTATAGCCCGTAGTCTGAATTTAGACAAGTGTGTACAACGT
GTGCGGGCTCATACATGGTATGGGCCGCGTTCTGTGGGACCATGTTTGTG
GACATGTTTCCCACCCGCGAGCCTGGATTCTGAGAGACGCCGGGTACCCA
AAAAAACAGATACGACTTTTGTTTTTTGCGTGCAAGAGGCACCGAAAAGA
GTTGAGAGTACGAATGAACGATTGACGTCCGAAGCGTGTGCTTGTTTGGA
CACAGCTTTTTTTGGCAGGTACAAAGAACTTCTTCGAGGAACTGGCTGTC
GCTAAGGTTGACTGACGCCTGCCCCGACTCCTTGGATGTGTGTCGCATCG
CGTGCGATACTCTCGTTTTGGTCGAAAAAGCGAGAAACCGACCCCGAGAA
AAAAAGTCCACTCAATCCTCAAATCCTCTCGGACACAAAACGCAAAACAT
GTGATGGATCAATCGATCGTCTCGACCTCCGTTTGCCCTTTGATAGTATC
TGGTAGTATCTCCACGAGTGATTTTTTTTTTCGGCGGATAGGGGTACCGC
ATTTTCAAACTCCTACCCCCCACCACATAATCTCCAGCTTTTGTCGTTGA
TCCCGGCGAGGAAGACGAAGAGTGTCTTACAATACCAAATTCACTCGTCA
CTCACGTTGCGCCAGTGGCGGCTGTTTCCCCATCGATCAGCAACAAAAGC
CAGCATTGGGTGGAGGGCAAAAGGCTAAAAAAACTGGTATCCACATCCAA
CGCGTGTGCCTCACTTCAATTTGGTGCGGGTTGTCCCAATAGCTAGCGGG
AGGGCATGGATTGTTGTGCGCCCTCAAAGTCGCGATCGACGACGTTAACC
CCTCTGGGTCTCGTTTTTTTTTCTGAATCACAAAAAAAAAAAACGTGGGG
AGAGTTAGAAGGAGCGAGAGAGAAGTAACAGCTCTGAGCCAGATGTGTAC
TTCTCCAGGGCAGAAGCTATCTGGGCCCAGGGGTCGTGACAAACGTCCGC
GACAGGCTCGTGGTGTGTCATAATGGACCAGAAGCATCGCCGAGTGGAAA
ACAACTCATGAAAAAAACGGTCTAGGCGTGCAATCCATTGCTATCCAGTA
CCTGCCAGTCCCCTTTATTCAGTATAATAACGAATTATCATTTTTTTCAG
CGCCAAGTGATCAATTTTCAGGCATCGAAGACCCTAAGGCCCATACAGCA
CTTCTGTACTTCTCTGCTACCCCGCATCCCACCCCAAGCGTGGGCCTTCG
GGGTCACTAGAGCCCCTCTTCCACAAGCGCGAAGTTTGACAGACCTGAGC
AGCGAGCAAGCTACCGCTGCTGTGTGTGCGCGACAATGATGCACAGCGTG
TGGGGTGTGTCCTGTGTATGTGTGTACAGTAGTATGTATATATGCAGCGC
GTGAAATGTAGAGGTTCATTCCGAAGTGGATCTTGTGTAACAAGAGCGGC
CGAGGAAGCGAGTTGACAGGTGAAGGAGCGCATTTACAACTGAGCTACTG
TCCCACTCTATGTGCGAGCTTTGGATGGTAGTGCTGTACAACTACCATTG
ATGCTGAGGATCGGTTTGTTTAGTTGCCATCCCCTCTACGAACGTACTCC
GAGTATAATAGAGGTGATCAATGAAATTTTCATTTTTTTTCCGCCTGAAG
GCACAGAAGGGTTAATGACATTTGGGATCCACACACCGATCTTGGCTGTC
ACGCCTAGAAACCAGACATGCTCTCGCGGAAAAAGCCGAGTCAAGCTACA
GTATTAGTATTGTCCGAGCTAACGCGAACACCAACGCCATCCCATTTGTT
GATTTGTTGGAATAAGCATGACTCTCCGGTGTCGTCTCTCCCGCAGGCTA
TTCATAGCAGAACCCAAGACCTGTTGACGAGTTTACGACACACACACGTT
TCCGAAATTGACTTGCGGACGAATGGTCCGGACAAGCACGAAAGCGGGTG
TGAACGTTGTGGACAAATCTTCGGTCGTCGTGGGCAATTCTGAAGCCTTT
AGGTTTCAGTTTCTGTCGCGACTAAAAAAATCTCACTAAAGAATCTTGAC
CCCTTCCCAGTTCTCTCTCCACACTGAAGCTACAGCCCCGCCGCCGCAGG
CGATGCCTCCGCACACACCCACAGGTCGTGCGGATCGACGGCAGCCCTCT
CGAATCGCTGAGCTCCGTCCTGACGGCCACCGTTTGTGATTCGTCCACTC
TAATAACAAGTGACCGCTTTTGGCTGTTTTGATGCCATTGCCTTCCTCTC
GGCAGAAGCCTCTGCACACACACACACACACCAGCCCCCGCGGGCCAGCG
CCTCTCCATTCGTCGACTTCCATCCGGAAGGCCACATTTTGTAAGGCCCC
CACTCTAATTTCAGGTGTAAATTTCGCCAGACCCGGAAGGGGGTCCGACA
ACAGATCCACGAAAAAAATTGCCTCGGCTATCTCGAGAACAGGGGAAGCT
AGAGCTCCGTGCTTACCGTCGCTCGGTGTGCCATTGGGAACGATGGCCTC
TCGCCAAGATTGAGCAGCTTACATAGCCTATAACCCACATCATGTCAACT
CGCCCTGTACAGCAGATGTACGTCATGTTCATCAAAGAAATCCAGACTGC
TGTCAGACATGAATACTTCAACAACACAAAAAGATTATCACCGATTTCGC
CGCATTTCTTTCTTGGAAGACATAACTTTTACTTTTAGCAGGACTGCTGA
GTTTTTTTTTTCAACAACGAGACCAACGAGACTCCACTCCGGCAGCCGAT
CCAAAGCAGCAGATGCAAGTGTGCACCGACCTGCGGAGCTATGCACGTCA
TGTGTCCTGAGGTCAAATTTTGTCCCGGGGTGTGTTGGACAATAAAATCA
AACGACTTCAACTTACGACACAGCCATCGTCTCGCAACACCTTTTGTATC
TATGAGCAGCAGCTGGCGTTATGCCGTGCACGATAAACATGCCTTATGTG
CATGTCTTGGATCGCATCATCACGCATGACATACACCAGACCAAGGGGAG
ACGCAAAATGCTCTCATGGGGTGTAAATTTTCGTGCCCCCCCCCACAGTA
GTAGCAACGCACAAGGCTCAGCGGCAGCCATCACCACGGATGCACGTCAG
ACCAGCTACTTTCACTTTCCTCCTCCCGACTGTGTCTGCGGTTGCAACAA
TGCCACCGAAGGAGAAAGCTCCCAAGCCCTTCAGTAGGCATGGGGATCGG
GGTACGCATAGTTTTTTTGCGCCAACCTCAGCAAAAACTTCAACCACCAG
CCCACACCCACACGAGTTGTGCCTCGTAGGCCCCGGAATGGGATTCGGCG
GGCGTAGACCCAGATGCCCTGAATACCGCTCGACGTCAGCGGATAGCGGC
CATGCATTCGAATCGTGCGGGACAGACAGCGTCTGAAGCTCTCAACACTT
CGCGTATGGCAGCGAGAAACGCCGCACAGCTTGCGGCAAACACGGCACGG
AGGGTTGCGCTAATGAATTCGCGTCGGACTGCGAAACACGCCGCAACGCG
AGCTGCCGAGGACGCCGATAGTGCTACAAGGCGTGCAGCGAACACAGCGC
GGAAAGTCGCGGCGACGAAGGCTTCGGGGGTCGCTAAGACCGCGCACACT
CAAGGTGCCTAGATTCCGCGCACCTAATTTTTCATTAATCTCTTGGAGGG
CGATGCGGTAAACCCTCCAGCCTCCCTCTTGGCCGCTGGATTGTCTTTTG
GGCGACGGTCCATATGTGCACAAGGTGCCGTGAAAGTCGCTGATGGTCTT
CATCAGCATTGATGTGCCAAGGACATTCCCGGTCAACGGGTTGATAGGCC
CCGTTGACCGGGAATGTCCTTGGCACATCAATGCTGATGAAGACCATCAG
CGACTTTCACGGCACCTCGTGCACATATGGACTGTCGCCCAAGACAATCC
AGCGGCCGAGAGGAAGAGGAAGGCTAAAGGGTTCACCGCATCGTCCTCCA
AGAGGGTTCGTTCCGCAGCCAAAGCGGATGCTTCCCCGGTCAAATTGGCT
ACCACGTCGGCCCGGGCTGCCCGCCAGGCGGCCACGGTCGCAAAGAAGTA
AAGCAATTTCACGGCGTCTCCTCCCCTCTAGTTTCAATCAGTCTTTGCCA
GATTTTTTTTTTTTTGTGTTCTGCCTGTCCTGCGCACAACCATTTCACCT
CGGTGTTGACAGTCAATGGGATCATGTAGCCTCTTGAGGATGTCCGTGCT
TCGTTCTCGCCTGGTATAATTTGATTCAGATTCATCGATTTTCTTGACTT
CCTTGCCATGTTATCTGCACTTCTATCTATTATTAGGCGTGTACGCCATC
GCACAACTTTCGTGTTGATCTGTGGATGATATATAGAACATACCGGTTGC
CACGACATGTCAACATTTTCCAACTAAGGATTAGAACGTGTTCGTTTTGG
CAAACTTTAATTCGACTTGTGGCGTCACCCCCTGCGGGTTTCTTCAATTG
GGGGTTGGTTCCTCTTTTTTTTTTACTGGAAGTGGCTGTGATTGAGCCTG
CACTTTCCTTTCCATTTTCTGCGCTTTAGGCGTCAGTCTCAGACTCGCAT
ATGCGGAGACTCAAGGGGTTGGATGCCTTCGTCTTGCATGCCGTCTAGCG
CCCCTTGCTGGTGCTGTAGAACCAGGGATCCCCTCACGTCAAGAACCATG
TTGATTTTACAGTATCAACTACAAAAAATGCTGGTGATATGCGCTCTTGG
TCTCCGAGAGAAGCTCTTTCGCTGTTGTTTTTTTGTAAGAACTCAATATG
CGTTGCACAAATGTTCGCCGGGATCGATGCCGCCACGGATATATCGTACG
TGAGCTTTTCAATATGCGCTGCGGCACCCCTGTCTGTGCAATTTTTTTTC
GCAAAACCCTTCGGCGGGGGAACACATGCATCCAACATCAATCAACAAAA
TCATATTATTTGTGTTCGGAGGGGGTGTTCCCGGGCTATTATAAATTAGC
ACAGGCGAAAAAGAAGAGCGTTGCTCTCATGTAAGATGACGTCGCTATTG
TCCCCCCACCCACACCAGCGACCGCTGTAGTGCTTTCGTGACACCTAGTT
TGTCTTGTTTGGCTGCTACTGTGCGTTGTTGTATGTTGATGTTGATCCCG
TTCTCTGTCTCTCCTGCCCGAATCTCGAATACACGTTTTGTTTGATCGTA
GACTTTGGCAAGTACACTTCGATAAGTCCCGAAGAGTGGCTGGAAGGAAC
TGTCGTGTCGATTATGACCTACGGTGCTTTCGTGAGGCTGGCGGGTAACA
TTGATGGCATGGTCCACATCTCCCAGCTGGACCCCGCCGGGGAGAGGGTG
GACTCGGTGTACAACTCAGTGGAGGTGCGTTACTTTTTTGTGCTAATGCA
CCGAAGGATGAAAAGGTGCAAGCAAGGGGTAAGATTTGTGGGTGCGGTTG
GTAGATTTCGGCCTCCGCTGACTTTCACTCAGGCCTGCTTGTCTTGTAGT
GACCCGTTGGTGGCTTTCCCTCCTTTCTTTGAGTTGGTTTCGCACTGGTA
TCACGTGGCTACATTTTTACTCCAACGCGTGTACTTTGTCCCCAACAAGA
CTCCGTACACAGCTCACGCGTGCGAAAAAGGCTGCCCTGATGGACCTATA
TCCCCAAGCTGTACCGGTATTTAGCCAGCGCCGCCTTTTGCGGCACGCTG
ACCCTCTGAACAACGCCTTCCATCTTCATGCCCACCCCTTGCGCTGTCAT
CTCGTCTTGCAAAAACAAAACAGATCGGCCAGGCCGTGAAGGTGCGCATC
TTAGAGGCCGACCCCTCGACCAAGAAGCTCCGACTCTCCATGAGGGATCC
CAGCTACGAAGGGCAGTCGAGCCCCAGCTTTGGCGACCGCCGCGGCGCGA
AAAAGGTCAAGACCGTAGAGAAGTACGCGGACATGTCTTCGGAGGAGTGG
ATCAGCGGGCGCGTGTCGTCCATCACGCACTTCGGGGCCTTTGTATCGGT
CGACGACGTCACGGACGGCCTGCTGCACATCTCGCAGATTCAGGAAGAAC
ACGTGAGCAACGTTGAGGACCACCTTCAGATCGGACAGGAGGTCCAGGTC
CGCGTTATCGAGGTCGACGTGGACAACTGCCGCCTCGGCCTGAGCATGCG
CGAGCCGCGCCAGGAAATGCCTCGCGGCTCGCGCGGCAAGAAGGACGTGA
GCATATTGCTCAACCGGGACCCGAACGAGTTCATCCCCGGTAGGGTGGTG
TCCATCGTTCCGTACGGCGCGTTCGTGAACATCGAGGGCAACATCGACGG
GCTCGTGCACATCTCGGAGATGGCTGCCGGCCGCGTCGACAGCGTTGAGG
ACATCTGCGAGGTGAGAGAGAGGAGAGCGTAGGACGTGTCGAAAGTTTCG
CCGCAACCAGGGCGGCGAGAGAATCGATCGCCGTCGTTTCCGTGCCCGTT
GTGCTTGGTGCGACTTGTTCGTGGTGTGCTTTTGTTAAGTCTCGCGTTGA
GCCATGCATCGTTCACGGCGATGTCGGGCTTCGAGTGCGTGTGCGTCCGC
AGTGACCAAGGTCATCTATCTCTAACAAAACCATCGTCGCGCTCGCTTGG
CCTTGGCTCCCCTCGCGATTCGCAGATGGGCCAGGAAGTTATGGTTCGCA
TCGCGGAAGTCAACACGGACAACAACACCGTTAACCTGTCCATGGTGCCC
GCCGGTGCATACGACGACAGGAGGGGCGGCGGTAAGACTAAAAGGGGGGT
ATGGGTGGTCTGCGGCTTTGACATCTATGACTCCGCTGACAGACACGCTG
AGTTTGAGTTTGCGTTTTACGCTGGAGTTGGGCACGTCCGTATTGTTGCT
CGTGTGGTATCCAATGCCTACGGTCTTTCTTTCTTTTTCAATCACTCCCG
ATTGTATTGAATAGTACGGATTTGACCCGCTTCACGCTGCGTCACGCCCG
TCCGCACAGGCTCCCATCGCATCTAGGTTTACCCGCTAGTCTACCTCGCC
CCGTGTCCTGTGTCTCCGTTCAAACGATATGCCTTTTTATTTGTAATTTT
GTTGCTGTATCCCCCTCCCCCACGTGCTAAACCTAAATTCCTAGGGGAGG
ACAACTACAACTCGACCAACGACTTCTTAAACGACTTCAATTACTAAAAA
ATGGAGAGAGCCCGCAGTGGGGTGACGCGTCAAGTAGGTGATGCCCAACC
CCGTGTGCGGAAATACTAACGAGCCCCCGAACCGGTGCTCCGCAATTTGC
GAACCAACACCGAACGTCACGTGACGATCAAACCGCCCACGTACGTGCGT
GTGCAGGTAACGACGAGGGTTACGGTGGAGAAGGCGGTAGGTCAACAGGA
CGGGGGCGGGGGGCGCGGTGAGGCGAGCTCCGCTTCGCTTGGGCGCGAAG
ATTTCGGCGACCGCGCGCAGGGGTTGGTGAAGGCGGGGGCGGGGCAGACT
GGCAGCAGTTCCTCAACAACTACTTCGACGACAAGGAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1002:39668..54355+

>mRNA_P-lacustris_contig1002.132.1 ID=mRNA_P-lacustris_contig1002.132.1|Name=mRNA_P-lacustris_contig1002.132.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4212bp|location=Sequence derived from alignment at P-lacustris_contig1002:39668..54355+ (Pleurocladia lacustris SAG_25_93)
ATGAGGACGGTGTGCGTTAGCCTCCCCCAGGCTGTATTGCTGGGCCTTGC
CGGGTCGAGCAGGGCCTTCCTGCAGAGCGTGCGGCCGACGCGCTTCGTGG
TACCGGCGCACAAGTACCACGCGGCGGTGTCCCGAACGCGCGCAGTGCAG
ACCCGCGTCCCTGCCGTGGGCCGAAACATGCGCATCATGTCGGCGGCCGT
AGACGAGACCGAGACAACGACAGATGCTGCTGTAGCCGAAGACTCAATCC
CGATTGCCGTAGAGATCCCGGTCGCCATCGAGGACCCCCTCGCTGCTGCC
TTGGAGATGAGGACGGTGTGCGTTAGCCTCCCCCAGGCTGTATTGCTGGG
CCTTGCCGGGTCGAGCAGGGCCTTCCTGCAGAGCGTGCGGCCGACGCGCT
TCGTGGTACCGGCGCACAAGTACCACGCGGCGGTGTCCCGAACGCGCGCA
GTGCAGACCCGCGTCCCTGCCGTGGGCCGAAACATGCGCATCATGTCGGC
GGCCGTAGACGAGACCGAGACAACGACAGATGCTGCTGTAGCCGAAGACT
CAATCCCGATTGCCGTAGAGATCCCGGTCGCCATCGAGGACCCCCTCGCT
GCTGCCTTGGAGGAGGGTGACGAGGACGCGAACTCCATCGCGCTGGAGGA
CATTGTGGTTGGCGAGGAGTACGAAGGCGTGATCAACAACGTCGTCAGCT
ACGGCGCGTTCGTTGACATAGGCACGGAGGAGGGTGACGAGGACGCGAAC
TCCATCGCGCTGGAGGACATTGTGGTTGGCGAGGAGTACGAAGGCGTGAT
CAACAACGTCGTCAGCTACGGCGCGTTCGTTGACATAGGCACGGAGGTGA
ACGGGCTGGTTCACATCTCTCAGCTGGCCGATGAGTTCGTGGCAAACTGC
GACGACCACGTCAAGGAGGGAGACATGGTGAACGGGCTGGTTCACATCTC
TCAGCTGGCCGATGAGTTCGTGGCAAACTGCGACGACCACGTCAAGGAGG
GAGACATGGTGCGTGTGCGCGTGCTAAGCGTGGACGGCGACGCACGCAAG
CTTGTGCTCTCCATGCGCCAGAAGCCGCGCGCGTCGAGCAGCGAGCAGGG
CAACGTCCAGAAGTACGCGGACATGCTCGCGGAGGTGCGTGTGCGCGTGC
TAAGCGTGGACGGCGACGCACGCAAGCTTGTGCTCTCCATGCGCCAGAAG
CCGCGCGCGTCGAGCAGCGAGCAGGGCAACGTCCAGAAGTACGCGGACAT
GCTCGCGGAGGACCCGAGCCAGTTCATACCCGCCAAGGTGGAGAACATCG
TCAGCTACGGCGCTTTCTTCAGCCTCGACGACGGCTGCTCCGGCTTCGTG
CACATCTCCCAGGACCCGAGCCAGTTCATACCCGCCAAGGTGGAGAACAT
CGTCAGCTACGGCGCTTTCTTCAGCCTCGACGACGGCTGCTCCGGCTTCG
TGCACATCTCCCAGATGTCCCCGGACCGTGGGCACGTATCAGACGTGAGC
GACGTCTTGACTGTCGGCCAGGTTGTGGACGTGCGCATCCGCGAGATGTC
CCCGGACCGTGGGCACGTATCAGACGTGAGCGACGTCTTGACTGTCGGCC
AGGTTGTGGACGTGCGCATCCGCGAGGTCGACGAGAAGCTCGGTCGCATC
AACATGAGCCTTCTTCCGTACGGCCAGGGCGAGCCCGTCCGCGCAGCCCC
CTTGTCTGCCACCAAGGACGTATCCCAATTTGTGGGTGTGGACCCGACGG
AGTTCAAAAAGGGCATCGTGTCCGCCGTGCAAGACTACGGGCTGTTCGTC
AACATCGAGGGCGTCGACGGCCTCTTGCACGTCTCGAAGATGAGGTCGAC
GAGAAGCTCGGTCGCATCAACATGAGCCTTCTTCCGTACGGCCAGGGCGA
GCCCGTCCGCGCAGCCCCCTTGTCTGCCACCAAGGACGTATCCCAATTTG
TGGGTGTGGACCCGACGGAGTTCAAAAAGGGCATCGTGTCCGCCGTGCAA
GACTACGGGCTGTTCGTCAACATCGAGGGCGTCGACGGCCTCTTGCACGT
CTCGAAGATGAGCCCTGACCGCTCGGTCACCTCGGACAACATCCACTCAC
AATACACCGAGGGACAGGAGGTTAGTGTCCGAATCCTGGAGGTTAACGAA
GCCAACAACAAGATGTCGCTCAGCATGCTGCCCGCCACGGAAGAGGCCGC
CCTGACCGCTCGGTCACCTCGGACAACATCCACTCACAATACACCGAGGG
ACAGGAGGTTAGTGTCCGAATCCTGGAGGTTAACGAAGCCAACAACAAGA
TGTCGCTCAGCATGCTGCCCGCCACGGAAGAGGCCGACTTTGGCAAGTAC
ACTTCGATAAGTCCCGAAGAGTGGCTGGAAGGAACTGTCGTGTCGATTAT
GACCTACGGTGCTTTCGTGAGGCTGGCGGGTAACATTGATGGCATGGTCC
ACATCTCCCAGCTGGACCCCGCCGGGGAGAGGGTGGACTCGGTGTACAAC
TCAGTGGAGACTTTGGCAAGTACACTTCGATAAGTCCCGAAGAGTGGCTG
GAAGGAACTGTCGTGTCGATTATGACCTACGGTGCTTTCGTGAGGCTGGC
GGGTAACATTGATGGCATGGTCCACATCTCCCAGCTGGACCCCGCCGGGG
AGAGGGTGGACTCGGTGTACAACTCAGTGGAGATCGGCCAGGCCGTGAAG
GTGCGCATCTTAGAGGCCGACCCCTCGACCAAGAAGCTCCGACTCTCCAT
GAGGGATCCCAGCTACGAAGGGCAGTCGAGCCCCAGCTTTGGCGACCGCC
GCGGCGCGAAAAAGGTCAAGACCGTAGAGAAGTACGCGGACATGTCTTCG
GAGGAGTGGATCAGCGGGCGCGTGTCGTCCATCACGCACTTCGGGGCCTT
TGTATCGGTCGACGACGTCACGGACGGCCTGCTGCACATCTCGCAGATTC
AGGAAGAACACGTGAGCAACGTTGAGGACCACCTTCAGATCGGACAGGAG
GTCCAGGTCCGCGTTATCGAGGTCGACGTGGACAACTGCCGCCTCGGCCT
GAGCATGCGCGAGCCGCGCCAGGAAATGCCTCGCGGCTCGCGCGGCAAGA
AGGACGTGAGCATATTGCTCAACCGGGACCCGAACGAGTTCATCCCCGGT
AGGGTGGTGTCCATCGTTCCGTACGGCGCGTTCGTGAACATCGAGGGCAA
CATCGACGGGCTCGTGCACATCTCGGAGATGGCTGCCGGCCGCGTCGACA
GCGTTGAGGACATCTGCGAGATCGGCCAGGCCGTGAAGGTGCGCATCTTA
GAGGCCGACCCCTCGACCAAGAAGCTCCGACTCTCCATGAGGGATCCCAG
CTACGAAGGGCAGTCGAGCCCCAGCTTTGGCGACCGCCGCGGCGCGAAAA
AGGTCAAGACCGTAGAGAAGTACGCGGACATGTCTTCGGAGGAGTGGATC
AGCGGGCGCGTGTCGTCCATCACGCACTTCGGGGCCTTTGTATCGGTCGA
CGACGTCACGGACGGCCTGCTGCACATCTCGCAGATTCAGGAAGAACACG
TGAGCAACGTTGAGGACCACCTTCAGATCGGACAGGAGGTCCAGGTCCGC
GTTATCGAGGTCGACGTGGACAACTGCCGCCTCGGCCTGAGCATGCGCGA
GCCGCGCCAGGAAATGCCTCGCGGCTCGCGCGGCAAGAAGGACGTGAGCA
TATTGCTCAACCGGGACCCGAACGAGTTCATCCCCGGTAGGGTGGTGTCC
ATCGTTCCGTACGGCGCGTTCGTGAACATCGAGGGCAACATCGACGGGCT
CGTGCACATCTCGGAGATGGCTGCCGGCCGCGTCGACAGCGTTGAGGACA
TCTGCGAGATGGGCCAGGAAGTTATGGTTCGCATCGCGGAAGTCAACACG
GACAACAACACCGTTAACCTGTCCATGGTGCCCGCCGGTGCATACGACGA
CAGGAGGGGCGGCGGTAAGACTAAAAGGGGGATGGGCCAGGAAGTTATGG
TTCGCATCGCGGAAGTCAACACGGACAACAACACCGTTAACCTGTCCATG
GTGCCCGCCGGTGCATACGACGACAGGAGGGGCGGCGGTAAGACTAAAAG
GGGGGGTTACGGTGGAGAAGGCGGTAGGTCAACAGGACGGGGGCGGGGGG
CGCGGTGAGGTTACGGTGGAGAAGGCGGTAGGTCAACAGGACGGGGGCGG
GGGGCGCGGTGA
back to top