mRNA_P-lacustris_contig1002.130.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1002.130.1
Unique NamemRNA_P-lacustris_contig1002.130.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1002.130.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.560e-58
Identity = 177/317 (55.84%), Postives = 195/317 (61.51%), Query Frame = 2 
Query:    2 LTLSASQAAAQGKNSSLYKSAGGALSSLLNTFVDESYYSXXXXXXXTNTKSRGS-QEALASSPPSLANPTAAGASENPANRPRCAIAELGDALGGQGGRGGGRDGR-------CSSLKALGLARTGMTERDAVRLASTLRARPVDSPLEEVEVAMNGLSFKAAEAVRLAVESPAVPIERGSS--DDFEARSRRGRRRRRPGG----RDPAAFAGAGEHQPKPQSRGEATRAAAAGERDAR-AEVR-------------------------GSGRELDVEVFGKRVRFERSGA--PSPR---SPPPPPAMEESDPWSE 817
            LTLSASQAAAQ K+SSLYKSAGGALSSLL TFVDESYY         N+ +RGS Q+A A +PPSL NP A G +E P    RCA+AELG+AL GQG RG             C SLKA+GLARTG+TERDA RLA+ LRARPVDSPLEEVEV +NGLS KAAEA+RLAVESP  P +R SS  DD E    RGR            DPAA    G  +P  +SR     AA A ER AR AEV                          GSGRELDVEVFGKRVRFER+G   PSPR   SP P  A  E DPWS+
Sbjct:  433 LTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYYGG-------NSNNRGSVQDASALTPPSLGNP-AGGVAERPL---RCAVAELGEALAGQGARGXXXXXXXXXXXXGCPSLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVESPTAPHDRSSSFVDDLEKNGGRGRXXXXXXXXXXRHDPAA---PGVDEPGLRSRRGTATAAPAEERSARGAEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSD 735
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1002.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLY3_ECTSI1.560e-5855.84Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1002contigP-lacustris_contig1002:30925..34211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue3.4e-28
Seed eggNOG ortholog2880.D8LLY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2076
Cds size1209
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1002.130.1prot_P-lacustris_contig1002.130.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1002 31437..33856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.163588-UTR-P-lacustris_contig1002:30924..314361622815269.163588-UTR-P-lacustris_contig1002:30924..31436Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 30925..31436 -
1693493440.3044667-UTR-P-lacustris_contig1002:30924..314361693493440.3044667-UTR-P-lacustris_contig1002:30924..31436Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 30925..31436 -
1622815269.2130218-UTR-P-lacustris_contig1002:33856..342111622815269.2130218-UTR-P-lacustris_contig1002:33856..34211Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 33857..34211 -
1693493440.36718-UTR-P-lacustris_contig1002:33856..342111693493440.36718-UTR-P-lacustris_contig1002:33856..34211Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 33857..34211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.1775591-CDS-P-lacustris_contig1002:31436..323151622815269.1775591-CDS-P-lacustris_contig1002:31436..32315Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 31437..32315 -
1693493440.3278348-CDS-P-lacustris_contig1002:31436..323151693493440.3278348-CDS-P-lacustris_contig1002:31436..32315Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 31437..32315 -
1622815269.190431-CDS-P-lacustris_contig1002:32928..331801622815269.190431-CDS-P-lacustris_contig1002:32928..33180Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 32929..33180 -
1693493440.3442237-CDS-P-lacustris_contig1002:32928..331801693493440.3442237-CDS-P-lacustris_contig1002:32928..33180Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 32929..33180 -
1622815269.2010696-CDS-P-lacustris_contig1002:33778..338561622815269.2010696-CDS-P-lacustris_contig1002:33778..33856Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 33779..33856 -
1693493440.3591099-CDS-P-lacustris_contig1002:33778..338561693493440.3591099-CDS-P-lacustris_contig1002:33778..33856Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 33779..33856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1002.130.1

>prot_P-lacustris_contig1002.130.1 ID=prot_P-lacustris_contig1002.130.1|Name=mRNA_P-lacustris_contig1002.130.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=403bp
MTERDAVRLASTLRARPVDSPLEEVEVAMNGLSFKAAEAVRLAVESPAVP
IERGSSDDFEARSRRGRRRRRPGGRDPAAFAGAGEHQPKPQSRGEATRAA
AAGERDARAEVRGSGRELDVEVFGKRVRFERSGAPSPRSPPPPPAMEESD
PWSEDDGVEFGDVSTAATHGSAFSSSSEDDDGAADTHLDKEGKMPAVTVE
ATRGPWSSAAVTLRIAAARIQKIGVIKPAMVTTATSRNDAPRGAPPLLGK
SPADGPRRRREFPLCAVVVVAAACRRSKALADNGGRCGSKEKSGTATTGY
CAGGSKRCPKKQKRTAKAWRHQPRSSGRQASKSNPRRQATGLQIKTGTAA
NGLEGPTRFGPNKQAKMRTLAEPQHQPRWSGTQASAILNLAVISARTETP
RG*
back to top

mRNA from alignment at P-lacustris_contig1002:30925..34211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1002.130.1 ID=mRNA_P-lacustris_contig1002.130.1|Name=mRNA_P-lacustris_contig1002.130.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3287bp|location=Sequence derived from alignment at P-lacustris_contig1002:30925..34211- (Pleurocladia lacustris SAG_25_93)
GCTGACCCTGAGCGCGTCCCAAGCGGCCGCGCAAGGCAAGAACTCTTCCC
TATACAAGTCGGCGGGCGGCGCGCTTTCTTCCCTCCTCAATACCTTCGTG
GACGAGAGCTACTACAGTAGTAGCAGCAGCACCAGCAGCACCAACACCAA
AAGCCGCGGCAGTCAAGAGGCCTTGGCGTCATCCCCTCCGTCGCTAGCAA
ATCCCACCGCTGCCGGTGCCTCTGAGAACCCGGCGAATCGTCCGAGGTGC
GCCATCGCGGAACTTGGAGACGCGTTAGGTGGTCAGGGTGGCCGCGGCGG
CGGCCGCGACGGGCGCTGCTCCTCCTTGAAAGCGCTGGGGCTGGCAAGGA
CGGGTATGACCGAGAGAGACGCGGTAAGACTCGCGTCGACTCTCAGGGCT
AGGCCCGTAGATAGCCCACTGGAGGAAGTGGAGGTGAGGAGTGGGGGGGC
ACTTATTCCGTTATCTCGTTATCTCGGCGTTGCGTTCAGGCTGTGTCAGA
CGGAACCGGAATACCGATTAGATCGGCTGCAAGAGTCGTCGACGCTCGTG
CCATTTTGGGACTTGGAGGCTCTTCTCTAGAGGATCGCTCGGGGATCCTT
TTTTGTTTTTTGATTCATTAGTTGGTGGACAAGATTTTTAGATGTATCGC
TTTTCTATTCTAGTGCTCTTCGATGCATCGTTTCCGGAAAAATGAAGCTA
GAAGGTGCTAAGGGCGCTTCAAGTCGAGTGGTGTGAGCTCATTGAAGCAC
CCCTCCAGGTCCCTTTTCCATTTTTGGAGATGCTGTCTGGGAAAGGGGGC
TTCAAGTCGAGTGGTGTGAGCTCATTGAAGCACCCCTCCAGGTCACTTTT
CTATTTTTGCGCCCACTGCTGAAGCGGCTTTGACGACAACCGCTTAGCGA
GAGCGATGTCTCGCCGCCGCGTTTCAAAAATCCACAAGACTTTTCCTCAG
CTTCTGTTAGCCATAGCGAACGACTTCCCAACCCCGGCAAGCACCCTCGT
TTCTCGCCTCGTTTCTTGATCCCTTGGCAAGGTGGCAATGAACGGGCTAA
GCTTCAAAGCGGCCGAAGCCGTTCGATTGGCGGTTGAATCTCCCGCGGTC
CCGATCGAGCGCGGCAGTTCCGACGACTTCGAAGCCCGGAGTCGCAGGGG
GCGGCGGCGGCGGCGGCCAGGCGGCCGTGACCCCGCCGCGTTCGCCGGTG
CAGGAGAGCATCAACCGAAGCCGCAGTCGAGAGGAGAAGCAACGAGGGCT
GCAGCAGCCGGCGAACGGGATGCAAGGGCGGAGGTGGGGAGTACGTTCCA
CCGGGGGAAGCGTAGAACTGGGCTTGTTCGGGAAAAAAATTGCGTCGTTT
CGTCAGGTGATTTCGCGTGTGGACGTGTGGCTCCGAGCGGGAGAGGGGCG
CGGGGACGCTCTCCATGATTTATTTTCGTCGCCGCCATCAACGAATCGTG
CGCCCGTGTCTCCGTGGGATGCTTCGAATTGATCCGTTCTTCCTCGGCGC
GTAGGAGCATTTGGACTAGACCAGCGCGGGTGTCTGATGCTTTGATGCAC
TAGTTTTACTTTGAGAGTCACATGCTACAAGAGCCCGTCCCCGGTAAGGC
GCCGGCTCCAAGTGTGGCAGTACCCCGTACGGCAGCATGGTGCATGGCAC
CGATGCTTTGTGCCTTTCGTGTCCATGAGCCCCGGATCGCCCCACAGGCT
GCTCACCGCGTATTCACATGTGTTGTGCATGTGTTCCACGCACCGCCTCC
ATTCCTGGCCCCGCCGCCTATTTTTCAACCATACCTCTTCGGATCTCCTT
CAACCGCCGCTTGGGTCATGTAAACACAAACCCTGAAACGGTGGAATTCT
GCACGCCCCTTTGTCGTTGTCTTACCCCTCCGTACGGCGGTGATAGGTGA
GAGGCTCCGGGAGAGAGCTAGACGTCGAAGTGTTCGGGAAACGGGTCCGC
TTCGAGCGGTCGGGGGCGCCGTCCCCTCGGTCTCCTCCGCCGCCACCGGC
GATGGAGGAGTCGGATCCGTGGTCTGAGGATGACGGCGTTGAGTTTGGCG
ACGTGTCTACCGCCGCAACTCACGGATCCGCTTTCTCGTCGTCCTCTGAG
GACGATGACGGTGCTGCCGATACTCATTTGGACAAAGAGGGGAAGATGCC
GGCGGTGACGGTAGAAGCGACACGCGGCCCGTGGAGCTCGGCAGCGGTGA
CCCTGAGAATAGCGGCAGCGCGGATACAGAAGATTGGGGTGATCAAACCA
GCGATGGTGACTACAGCGACGTCGAGGAACGACGCGCCTCGGGGGGCACC
GCCGCTTCTGGGGAAAAGCCCGGCCGACGGACCCAGACGTCGCCGCGAAT
TTCCACTATGCGCGGTGGTGGTGGTGGCGGCGGCGTGCCGCCGATCGAAA
GCACTGGCGGACAACGGCGGCCGTTGCGGTTCAAAGGAAAAGTCGGGGAC
GGCGACGACGGGGTACTGTGCCGGGGGCTCAAAGCGGTGTCCGAAGAAGC
AGAAGAGGACTGCGAAAGCATGGCGGCATCAGCCGAGATCGAGTGGGAGG
CAGGCTTCGAAGAGCAACCCCCGTCGACAAGCAACGGGGTTGCAGATCAA
GACAGGGACGGCGGCGAATGGGCTGGAGGGGCCGACCCGCTTTGGGCCGA
ACAAACAGGCGAAAATGCGGACGCTGGCGGAGCCGCAGCATCAGCCGAGA
TGGAGTGGAACGCAGGCTTCGGCAATACTGAACTTGGCGGTGATTTCAGC
GCGGACGGAGACGCCCAGGGGGTAGGGGACGGCAACGGTGTTGGTTCGAC
GGTAAAATGAAGAATTGTGCACGCGCCAATAGCAGGGTGCAACGAAGGGC
GAGTTAGGGGTGAAGGGGGTCGTGGCTGTGGACTAAACGAGCTGCTTTGA
ATTTGGTCCTAGGGGTGTGCGCTCACTCGCTCGTTTACTGGGGCCTTGTC
GAGTTTGGGGGCTTTCGGAGACACATGCCGGTATTGCGGGGCGCTAATCG
CATGATGAGCTTGTGCGGTCAAGTGCCTCCGGTATAGTGCATATTTTCGT
TACCCCTGAGGAAATCGATGGCTGAGACAATATGCGTCTGTTTTTCTTGC
GAAGGGTTAGACTAAGCAAGTGAACGACGCCAGGACGCACTTTAAAATGT
CGAGGCCATGCGGGCGACGAACTCTGTCCTTGGTTTTATCGGAAAGACTA
CAAAAGTACCTATGGGGCAAGAACAAAGTTGGGGCACACAAGGTCGATCT
CGCCAGCCTTGCGCTCTGGATCTAACGTCTGTCACCT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1002:30925..34211-

>mRNA_P-lacustris_contig1002.130.1 ID=mRNA_P-lacustris_contig1002.130.1|Name=mRNA_P-lacustris_contig1002.130.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2418bp|location=Sequence derived from alignment at P-lacustris_contig1002:30925..34211- (Pleurocladia lacustris SAG_25_93)
ATGACCGAGAGAGACGCGGTAAGACTCGCGTCGACTCTCAGGGCTAGGCC
CGTAGATAGCCCACTGGAGGAAGTGGAGATGACCGAGAGAGACGCGGTAA
GACTCGCGTCGACTCTCAGGGCTAGGCCCGTAGATAGCCCACTGGAGGAA
GTGGAGGTGGCAATGAACGGGCTAAGCTTCAAAGCGGCCGAAGCCGTTCG
ATTGGCGGTTGAATCTCCCGCGGTCCCGATCGAGCGCGGCAGTTCCGACG
ACTTCGAAGCCCGGAGTCGCAGGGGGCGGCGGCGGCGGCGGCCAGGCGGC
CGTGACCCCGCCGCGTTCGCCGGTGCAGGAGAGCATCAACCGAAGCCGCA
GTCGAGAGGAGAAGCAACGAGGGCTGCAGCAGCCGGCGAACGGGATGCAA
GGGCGGAGGTGGCAATGAACGGGCTAAGCTTCAAAGCGGCCGAAGCCGTT
CGATTGGCGGTTGAATCTCCCGCGGTCCCGATCGAGCGCGGCAGTTCCGA
CGACTTCGAAGCCCGGAGTCGCAGGGGGCGGCGGCGGCGGCGGCCAGGCG
GCCGTGACCCCGCCGCGTTCGCCGGTGCAGGAGAGCATCAACCGAAGCCG
CAGTCGAGAGGAGAAGCAACGAGGGCTGCAGCAGCCGGCGAACGGGATGC
AAGGGCGGAGGTGAGAGGCTCCGGGAGAGAGCTAGACGTCGAAGTGTTCG
GGAAACGGGTCCGCTTCGAGCGGTCGGGGGCGCCGTCCCCTCGGTCTCCT
CCGCCGCCACCGGCGATGGAGGAGTCGGATCCGTGGTCTGAGGATGACGG
CGTTGAGTTTGGCGACGTGTCTACCGCCGCAACTCACGGATCCGCTTTCT
CGTCGTCCTCTGAGGACGATGACGGTGCTGCCGATACTCATTTGGACAAA
GAGGGGAAGATGCCGGCGGTGACGGTAGAAGCGACACGCGGCCCGTGGAG
CTCGGCAGCGGTGACCCTGAGAATAGCGGCAGCGCGGATACAGAAGATTG
GGGTGATCAAACCAGCGATGGTGACTACAGCGACGTCGAGGAACGACGCG
CCTCGGGGGGCACCGCCGCTTCTGGGGAAAAGCCCGGCCGACGGACCCAG
ACGTCGCCGCGAATTTCCACTATGCGCGGTGGTGGTGGTGGCGGCGGCGT
GCCGCCGATCGAAAGCACTGGCGGACAACGGCGGCCGTTGCGGTTCAAAG
GAAAAGTCGGGGACGGCGACGACGGGGTACTGTGCCGGGGGCTCAAAGCG
GTGTCCGAAGAAGCAGAAGAGGACTGCGAAAGCATGGCGGCATCAGCCGA
GATCGAGTGGGAGGCAGGCTTCGAAGAGCAACCCCCGTCGACAAGCAACG
GGGTTGCAGATCAAGACAGGGACGGCGGCGAATGGGCTGGAGGGGCCGAC
CCGCTTTGGGCCGAACAAACAGGCGAAAATGCGGACGCTGGCGGAGCCGC
AGCATCAGCCGAGATGGAGTGGAACGCAGGCTTCGGCAATACTGAACTTG
GCGGTGATTTCAGCGCGGACGGAGACGCCCAGGGGGTAGGTGAGAGGCTC
CGGGAGAGAGCTAGACGTCGAAGTGTTCGGGAAACGGGTCCGCTTCGAGC
GGTCGGGGGCGCCGTCCCCTCGGTCTCCTCCGCCGCCACCGGCGATGGAG
GAGTCGGATCCGTGGTCTGAGGATGACGGCGTTGAGTTTGGCGACGTGTC
TACCGCCGCAACTCACGGATCCGCTTTCTCGTCGTCCTCTGAGGACGATG
ACGGTGCTGCCGATACTCATTTGGACAAAGAGGGGAAGATGCCGGCGGTG
ACGGTAGAAGCGACACGCGGCCCGTGGAGCTCGGCAGCGGTGACCCTGAG
AATAGCGGCAGCGCGGATACAGAAGATTGGGGTGATCAAACCAGCGATGG
TGACTACAGCGACGTCGAGGAACGACGCGCCTCGGGGGGCACCGCCGCTT
CTGGGGAAAAGCCCGGCCGACGGACCCAGACGTCGCCGCGAATTTCCACT
ATGCGCGGTGGTGGTGGTGGCGGCGGCGTGCCGCCGATCGAAAGCACTGG
CGGACAACGGCGGCCGTTGCGGTTCAAAGGAAAAGTCGGGGACGGCGACG
ACGGGGTACTGTGCCGGGGGCTCAAAGCGGTGTCCGAAGAAGCAGAAGAG
GACTGCGAAAGCATGGCGGCATCAGCCGAGATCGAGTGGGAGGCAGGCTT
CGAAGAGCAACCCCCGTCGACAAGCAACGGGGTTGCAGATCAAGACAGGG
ACGGCGGCGAATGGGCTGGAGGGGCCGACCCGCTTTGGGCCGAACAAACA
GGCGAAAATGCGGACGCTGGCGGAGCCGCAGCATCAGCCGAGATGGAGTG
GAACGCAGGCTTCGGCAATACTGAACTTGGCGGTGATTTCAGCGCGGACG
GAGACGCCCAGGGGGTAG
back to top