Homology
BLAST of mRNA_P-lacustris_contig1002.130.1 vs. uniprot
Match:
D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)
HSP 1 Score: 224 bits (572), Expect = 1.560e-58
Identity = 177/317 (55.84%), Postives = 195/317 (61.51%), Query Frame = 2
Query: 2 LTLSASQAAAQGKNSSLYKSAGGALSSLLNTFVDESYYSXXXXXXXTNTKSRGS-QEALASSPPSLANPTAAGASENPANRPRCAIAELGDALGGQGGRGGGRDGR-------CSSLKALGLARTGMTERDAVRLASTLRARPVDSPLEEVEVAMNGLSFKAAEAVRLAVESPAVPIERGSS--DDFEARSRRGRRRRRPGG----RDPAAFAGAGEHQPKPQSRGEATRAAAAGERDAR-AEVR-------------------------GSGRELDVEVFGKRVRFERSGA--PSPR---SPPPPPAMEESDPWSE 817
LTLSASQAAAQ K+SSLYKSAGGALSSLL TFVDESYY N+ +RGS Q+A A +PPSL NP A G +E P RCA+AELG+AL GQG RG C SLKA+GLARTG+TERDA RLA+ LRARPVDSPLEEVEV +NGLS KAAEA+RLAVESP P +R SS DD E RGR DPAA G +P +SR AA A ER AR AEV GSGRELDVEVFGKRVRFER+G PSPR SP P A E DPWS+
Sbjct: 433 LTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYYGG-------NSNNRGSVQDASALTPPSLGNP-AGGVAERPL---RCAVAELGEALAGQGARGXXXXXXXXXXXXGCPSLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVESPTAPHDRSSSFVDDLEKNGGRGRXXXXXXXXXXRHDPAA---PGVDEPGLRSRRGTATAAPAEERSARGAEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSD 735
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1002.130.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.56e-58 / Id = 55.84 Sequence D8LLY3_ECTSI
Match Name E-value Identity Description
D8LLY3_ECTSI 1.560e-58 55.84 Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 132.9 Seed ortholog evalue 3.4e-28 Seed eggNOG ortholog 2880.D8LLY3 Hectar predicted targeting category other localisation EggNOG free text desc. interleukin-8 biosynthetic process EggNOG OGs KOG4308@1,KOG4308@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 3 Model size 2076 Cds size 1209 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815269.163588-UTR-P-lacustris_contig1002:30924..31436 1622815269.163588-UTR-P-lacustris_contig1002:30924..31436 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 30925..31436 - 1693493440.3044667-UTR-P-lacustris_contig1002:30924..31436 1693493440.3044667-UTR-P-lacustris_contig1002:30924..31436 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 30925..31436 - 1622815269.2130218-UTR-P-lacustris_contig1002:33856..34211 1622815269.2130218-UTR-P-lacustris_contig1002:33856..34211 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 33857..34211 - 1693493440.36718-UTR-P-lacustris_contig1002:33856..34211 1693493440.36718-UTR-P-lacustris_contig1002:33856..34211 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 33857..34211 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815269.1775591-CDS-P-lacustris_contig1002:31436..32315 1622815269.1775591-CDS-P-lacustris_contig1002:31436..32315 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 31437..32315 - 1693493440.3278348-CDS-P-lacustris_contig1002:31436..32315 1693493440.3278348-CDS-P-lacustris_contig1002:31436..32315 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 31437..32315 - 1622815269.190431-CDS-P-lacustris_contig1002:32928..33180 1622815269.190431-CDS-P-lacustris_contig1002:32928..33180 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 32929..33180 - 1693493440.3442237-CDS-P-lacustris_contig1002:32928..33180 1693493440.3442237-CDS-P-lacustris_contig1002:32928..33180 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 32929..33180 - 1622815269.2010696-CDS-P-lacustris_contig1002:33778..33856 1622815269.2010696-CDS-P-lacustris_contig1002:33778..33856 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 33779..33856 - 1693493440.3591099-CDS-P-lacustris_contig1002:33778..33856 1693493440.3591099-CDS-P-lacustris_contig1002:33778..33856 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 33779..33856 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1002.130.1
>prot_P-lacustris_contig1002.130.1 ID=prot_P-lacustris_contig1002.130.1|Name=mRNA_P-lacustris_contig1002.130.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=403bp
MTERDAVRLASTLRARPVDSPLEEVEVAMNGLSFKAAEAVRLAVESPAVP back to top mRNA from alignment at P-lacustris_contig1002:30925..34211-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1002.130.1 ID=mRNA_P-lacustris_contig1002.130.1|Name=mRNA_P-lacustris_contig1002.130.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3287bp|location=Sequence derived from alignment at P-lacustris_contig1002:30925..34211- (Pleurocladia lacustris SAG_25_93)GCTGACCCTGAGCGCGTCCCAAGCGGCCGCGCAAGGCAAGAACTCTTCCC
TATACAAGTCGGCGGGCGGCGCGCTTTCTTCCCTCCTCAATACCTTCGTG
GACGAGAGCTACTACAGTAGTAGCAGCAGCACCAGCAGCACCAACACCAA
AAGCCGCGGCAGTCAAGAGGCCTTGGCGTCATCCCCTCCGTCGCTAGCAA
ATCCCACCGCTGCCGGTGCCTCTGAGAACCCGGCGAATCGTCCGAGGTGC
GCCATCGCGGAACTTGGAGACGCGTTAGGTGGTCAGGGTGGCCGCGGCGG
CGGCCGCGACGGGCGCTGCTCCTCCTTGAAAGCGCTGGGGCTGGCAAGGA
CGGGT ATGACCGAGAGAGACGCGGTAAGACTCGCGTCGACTCTCAGGGCT
AGGCCCGTAGATAGCCCACTGGAGGAAGTGGAG GTGAGGAGTGGGGGGGC
ACTTATTCCGTTATCTCGTTATCTCGGCGTTGCGTTCAGGCTGTGTCAGA
CGGAACCGGAATACCGATTAGATCGGCTGCAAGAGTCGTCGACGCTCGTG
CCATTTTGGGACTTGGAGGCTCTTCTCTAGAGGATCGCTCGGGGATCCTT
TTTTGTTTTTTGATTCATTAGTTGGTGGACAAGATTTTTAGATGTATCGC
TTTTCTATTCTAGTGCTCTTCGATGCATCGTTTCCGGAAAAATGAAGCTA
GAAGGTGCTAAGGGCGCTTCAAGTCGAGTGGTGTGAGCTCATTGAAGCAC
CCCTCCAGGTCCCTTTTCCATTTTTGGAGATGCTGTCTGGGAAAGGGGGC
TTCAAGTCGAGTGGTGTGAGCTCATTGAAGCACCCCTCCAGGTCACTTTT
CTATTTTTGCGCCCACTGCTGAAGCGGCTTTGACGACAACCGCTTAGCGA
GAGCGATGTCTCGCCGCCGCGTTTCAAAAATCCACAAGACTTTTCCTCAG
CTTCTGTTAGCCATAGCGAACGACTTCCCAACCCCGGCAAGCACCCTCGT
TTCTCGCCTCGTTTCTTGATCCCTTGGCAAGGTGGCAATGAACGGGCTAA
GCTTCAAAGCGGCCGAAGCCGTTCGATTGGCGGTTGAATCTCCCGCGGTC
CCGATCGAGCGCGGCAGTTCCGACGACTTCGAAGCCCGGAGTCGCAGGGG
GCGGCGGCGGCGGCGGCCAGGCGGCCGTGACCCCGCCGCGTTCGCCGGTG
CAGGAGAGCATCAACCGAAGCCGCAGTCGAGAGGAGAAGCAACGAGGGCT
GCAGCAGCCGGCGAACGGGATGCAAGGGCGGAG GTGGGGAGTACGTTCCA
CCGGGGGAAGCGTAGAACTGGGCTTGTTCGGGAAAAAAATTGCGTCGTTT
CGTCAGGTGATTTCGCGTGTGGACGTGTGGCTCCGAGCGGGAGAGGGGCG
CGGGGACGCTCTCCATGATTTATTTTCGTCGCCGCCATCAACGAATCGTG
CGCCCGTGTCTCCGTGGGATGCTTCGAATTGATCCGTTCTTCCTCGGCGC
GTAGGAGCATTTGGACTAGACCAGCGCGGGTGTCTGATGCTTTGATGCAC
TAGTTTTACTTTGAGAGTCACATGCTACAAGAGCCCGTCCCCGGTAAGGC
GCCGGCTCCAAGTGTGGCAGTACCCCGTACGGCAGCATGGTGCATGGCAC
CGATGCTTTGTGCCTTTCGTGTCCATGAGCCCCGGATCGCCCCACAGGCT
GCTCACCGCGTATTCACATGTGTTGTGCATGTGTTCCACGCACCGCCTCC
ATTCCTGGCCCCGCCGCCTATTTTTCAACCATACCTCTTCGGATCTCCTT
CAACCGCCGCTTGGGTCATGTAAACACAAACCCTGAAACGGTGGAATTCT
GCACGCCCCTTTGTCGTTGTCTTACCCCTCCGTACGGCGGTGATAGGTGA
GAGGCTCCGGGAGAGAGCTAGACGTCGAAGTGTTCGGGAAACGGGTCCGC
TTCGAGCGGTCGGGGGCGCCGTCCCCTCGGTCTCCTCCGCCGCCACCGGC
GATGGAGGAGTCGGATCCGTGGTCTGAGGATGACGGCGTTGAGTTTGGCG
ACGTGTCTACCGCCGCAACTCACGGATCCGCTTTCTCGTCGTCCTCTGAG
GACGATGACGGTGCTGCCGATACTCATTTGGACAAAGAGGGGAAGATGCC
GGCGGTGACGGTAGAAGCGACACGCGGCCCGTGGAGCTCGGCAGCGGTGA
CCCTGAGAATAGCGGCAGCGCGGATACAGAAGATTGGGGTGATCAAACCA
GCGATGGTGACTACAGCGACGTCGAGGAACGACGCGCCTCGGGGGGCACC
GCCGCTTCTGGGGAAAAGCCCGGCCGACGGACCCAGACGTCGCCGCGAAT
TTCCACTATGCGCGGTGGTGGTGGTGGCGGCGGCGTGCCGCCGATCGAAA
GCACTGGCGGACAACGGCGGCCGTTGCGGTTCAAAGGAAAAGTCGGGGAC
GGCGACGACGGGGTACTGTGCCGGGGGCTCAAAGCGGTGTCCGAAGAAGC
AGAAGAGGACTGCGAAAGCATGGCGGCATCAGCCGAGATCGAGTGGGAGG
CAGGCTTCGAAGAGCAACCCCCGTCGACAAGCAACGGGGTTGCAGATCAA
GACAGGGACGGCGGCGAATGGGCTGGAGGGGCCGACCCGCTTTGGGCCGA
ACAAACAGGCGAAAATGCGGACGCTGGCGGAGCCGCAGCATCAGCCGAGA
TGGAGTGGAACGCAGGCTTCGGCAATACTGAACTTGGCGGTGATTTCAGC
GCGGACGGAGACGCCCAGGGGGTAG GGGACGGCAACGGTGTTGGTTCGAC
GGTAAAATGAAGAATTGTGCACGCGCCAATAGCAGGGTGCAACGAAGGGC
GAGTTAGGGGTGAAGGGGGTCGTGGCTGTGGACTAAACGAGCTGCTTTGA
ATTTGGTCCTAGGGGTGTGCGCTCACTCGCTCGTTTACTGGGGCCTTGTC
GAGTTTGGGGGCTTTCGGAGACACATGCCGGTATTGCGGGGCGCTAATCG
CATGATGAGCTTGTGCGGTCAAGTGCCTCCGGTATAGTGCATATTTTCGT
TACCCCTGAGGAAATCGATGGCTGAGACAATATGCGTCTGTTTTTCTTGC
GAAGGGTTAGACTAAGCAAGTGAACGACGCCAGGACGCACTTTAAAATGT
CGAGGCCATGCGGGCGACGAACTCTGTCCTTGGTTTTATCGGAAAGACTA
CAAAAGTACCTATGGGGCAAGAACAAAGTTGGGGCACACAAGGTCGATCT
CGCCAGCCTTGCGCTCTGGATCTAACGTCTGTCACCT back to top Coding sequence (CDS) from alignment at P-lacustris_contig1002:30925..34211-
>mRNA_P-lacustris_contig1002.130.1 ID=mRNA_P-lacustris_contig1002.130.1|Name=mRNA_P-lacustris_contig1002.130.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2418bp|location=Sequence derived from alignment at P-lacustris_contig1002:30925..34211- (Pleurocladia lacustris SAG_25_93) back to top