mRNA_P-lacustris_contig100.99.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig100.99.1
Unique NamemRNA_P-lacustris_contig100.99.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig100.99.1 vs. uniprot
Match: D7FVI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI0_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 9.060e-55
Identity = 122/226 (53.98%), Postives = 144/226 (63.72%), Query Frame = 1 
Query:  451 GAMLHGGETLASLSLLDRTSCGRDSGVLASGADFSRNAKMGAGGTSFATSDANNLPA-ATSSRAGGTPGSDDDLTDTDEGVMARLAEFTEMTRRTAVHNEELCRELADEKRRVAHTTRKLEQSQITCNELRESLALAQDTVMKLRDHEIAWAESTASEMSLKAEMCALKDEYGSVSGEVSVLRKRCEMLQRENAELVERFAKIAEEKRQVESRARRLLSRDRYRGY 1125
            G + +  E L + S +   S GRD     +GADF RNA +G G T+  T    ++PA AT+SRA G   SDDDLTDTDEGVMARLAEF EM RRTA HNE                                        V+KLR+HE+AWAESTASEMSL++EMCALKDEY  VSG+ S LRKRC++L+RENAELVERFA +AEEKRQ+ES+ARRLL  DRYRGY
Sbjct:   74 GELKYSREALTNKSEIMGASYGRDGTTPENGADFRRNASLGTGKTACPTPSTKSVPAPATASRAAGAATSDDDLTDTDEGVMARLAEFIEMARRTAAHNE----------------------------------------VVKLREHEMAWAESTASEMSLRSEMCALKDEYAGVSGDASALRKRCDVLERENAELVERFATMAEEKRQMESKARRLLRSDRYRGY 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVI0_ECTSI9.060e-5553.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig100contigP-lacustris_contig100:30050..34983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005930.1
Exons6
Model size1898
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig100.99.1prot_P-lacustris_contig100.99.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig100 30939..34213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.3650737-UTR-P-lacustris_contig100:30049..301491622815264.3650737-UTR-P-lacustris_contig100:30049..30149Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 30050..30149 +
1693493437.7592287-UTR-P-lacustris_contig100:30049..301491693493437.7592287-UTR-P-lacustris_contig100:30049..30149Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 30050..30149 +
1622815264.3790898-UTR-P-lacustris_contig100:30582..309381622815264.3790898-UTR-P-lacustris_contig100:30582..30938Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 30583..30938 +
1693493437.771696-UTR-P-lacustris_contig100:30582..309381693493437.771696-UTR-P-lacustris_contig100:30582..30938Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 30583..30938 +
1622815264.4487739-UTR-P-lacustris_contig100:34213..349831622815264.4487739-UTR-P-lacustris_contig100:34213..34983Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 34214..34983 +
1693493437.8311164-UTR-P-lacustris_contig100:34213..349831693493437.8311164-UTR-P-lacustris_contig100:34213..34983Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 34214..34983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.39132-CDS-P-lacustris_contig100:30938..311691622815264.39132-CDS-P-lacustris_contig100:30938..31169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 30939..31169 +
1693493437.7826183-CDS-P-lacustris_contig100:30938..311691693493437.7826183-CDS-P-lacustris_contig100:30938..31169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 30939..31169 +
1622815264.402292-CDS-P-lacustris_contig100:31634..316941622815264.402292-CDS-P-lacustris_contig100:31634..31694Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 31635..31694 +
1693493437.7952564-CDS-P-lacustris_contig100:31634..316941693493437.7952564-CDS-P-lacustris_contig100:31634..31694Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 31635..31694 +
1622815264.4179845-CDS-P-lacustris_contig100:32443..325631622815264.4179845-CDS-P-lacustris_contig100:32443..32563Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 32444..32563 +
1693493437.8053207-CDS-P-lacustris_contig100:32443..325631693493437.8053207-CDS-P-lacustris_contig100:32443..32563Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 32444..32563 +
1622815264.427816-CDS-P-lacustris_contig100:33039..332151622815264.427816-CDS-P-lacustris_contig100:33039..33215Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 33040..33215 +
1693493437.8134-CDS-P-lacustris_contig100:33039..332151693493437.8134-CDS-P-lacustris_contig100:33039..33215Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 33040..33215 +
1622815264.438154-CDS-P-lacustris_contig100:34128..342131622815264.438154-CDS-P-lacustris_contig100:34128..34213Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 34129..34213 +
1693493437.822127-CDS-P-lacustris_contig100:34128..342131693493437.822127-CDS-P-lacustris_contig100:34128..34213Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 34129..34213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig100.99.1

>prot_P-lacustris_contig100.99.1 ID=prot_P-lacustris_contig100.99.1|Name=mRNA_P-lacustris_contig100.99.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=224bp
MLHGGETLASLSLLDRTSCGRDSGVLASGADFSRNAKMGAGGTSFATSDA
NNLPAATSSRAGGTPGSDDDLTDTDEGVMARLAEFTEMTRRTAVHNEELC
RELADEKRRVAHTTRKLEQSQITCNELRESLALAQDTVMKLRDHEIAWAE
STASEMSLKAEMCALKDEYGSVSGEVSVLRKRCEMLQRENAELVERFAKI
AEEKRQVESRARRLLSRDRYRGY*
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mRNA from alignment at P-lacustris_contig100:30050..34983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig100.99.1 ID=mRNA_P-lacustris_contig100.99.1|Name=mRNA_P-lacustris_contig100.99.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4934bp|location=Sequence derived from alignment at P-lacustris_contig100:30050..34983+ (Pleurocladia lacustris SAG_25_93)
CTAATGCAGAGGAGCACCCGCTACCACTCACGCACAAGAGGAGCAGAGAG
CGCAAAGAGGGCGCCCCAACGCATCGAACGCGTAGCTTTGAAGAACCTCG
GTGTGTACCGCAGCATGAGGAGTGGGGTAACTCAAGTTTTGATTGCGCTG
GTCATCAATCAACACATCAACTGCCGATACGTCCAATGTGGACTGATTAA
TACGCAAATCCACACAAATAACTGCTCCACGAGCAGCAACTTTGGCCGGC
CCCTCCCAAAACGACCTCTCTTCAAACCTCTGTGTCCGCTGTCTAGTCTA
GAAGGTTCAAAATCACAACAATTTTTAGTAATTTGCTGTTTTCACACGTC
ACGCACTAAAATCACAACAATTTCAATTTGCTGTTTTCACACGTCACAAC
TGTTCTCAACCGCCCATGCCAACATGTTCTCACCGATTTCGATGCTACTG
CTTTTATTGCTCCTCGCCCCGGTCCATGGCTCATTGGATCCTTTCCGGTT
CCTGCCCGCGGGGCTTTGTGTTCACTATAAAAGTTGGGCCTGTCAAATAT
GGGCAAGCCGGAGGTGCAATCCGGCAGCTCACCCTCTTTCTCTTCGAAGC
CAGCACTTTCTCAAGGCCATGAACAGGCAAGATCAGGTCGACAGTCCTCA
ACAGCAGCGACAGCAGCAGCAGCATCAACGGGGTATCGTGGCACCCCATC
CACGTCATCATCGCTGGGACCATCGGCGTCGGGTGGTGTGCTCGACAACC
GTCTCGCCCCCGACCCAGGCGTTATTGGGAGAGCGCCTCCCAAGCTTCCA
ACAGTGGTAAAAACAGATCACCAGCTGCCGCAGCCGGAGCAGGGGCGAGA
GCTGGCGGAGACCGCTGTGGGGTCACAACTCATGGGGCCATGCTCCATGG
AGGAGAGACCCTCGCCAGCTTGTCACTGTTGGACAGAACTTCATGCGGCA
GAGACAGCGGGGTACTCGCCAGCGGTGCTGACTTCTCTCGGAATGCCAAG
ATGGGCGCGGGGGGCACCTCTTTCGCAACCTCCGACGCCAACAATTTGCC
TGCGGCAACTTCATCGAGAGCCGGAGGAACTCCAGGCAGCGACGACGATC
TCACGGACACCGACGAGGGTGTGAGTGAACCGTCCCCCCGATAGCGTTAG
GTTGGTTGTAGACTCGCGGTGGCAGTCCTGACGAAGGGTACCTATTCGAT
TCACAGGTGTGTCTCGCCTGCGCTCAAAAACTATTATATTCCACATTTAC
GTGGAACTACCAGTGGAAGGGGAATCGTCAAATGGCAGCGTTGACCTCAC
GCATATATTGTGAAACTGGGTTCGCGCGTGTGTTCGAAGAGAGCGACTCT
CGAACACTTCGGCGAGCCTATCCACCTAGGAAAGGTATGAAGCTTGTTTT
GCGCCCTCCTTGCTGTGCAGGAGACTATACTCCGCCTGGTGTCTAATGAA
GTGGCGACCGACCCCTCGTCACATTCTGTGCAAGCGGAAAGGTCATTCTT
TGCAAGCGGAAAGGTCGGTCGTTTCTTTATTTCAATGAAGAGATTCACTC
CAACAAATCAGTTGGTCGATACCCTTACGTTGCAGGTGATGGCCAGGTTG
GCGGAATTCACGGAGATGACCAGGCGAACCGCTGTTCACAATGAGGTGCG
TGAATGGGGTCTACATCCCACGGCAGCACAACACTCCGATCTACATTTAT
CCGTACATGAAACGCAACAGCTTGAATCACAGGACAGTGTCGTTTGTGAC
ACCCGTGCCGAGTCGTTGACAGTAATGGGGGCGGCCTGAGGTATGAAACT
TAACAAAGCAGGTTCCTCAATAATGGGGCATTTTTTCGATGAATGCGCTT
TCGAGGAAAGCGTTTCGTGGGCGTGCAGGACGTACGTACTTTAGGTGGTA
ACGTCTCCAAAATGAAATCAGGCTGCACTCATGATGTCTTTGGCTTGCTG
ACGAAGGCGGATGTTGGTTCGTATTTACGACCCGTTCGGTAAGTGCACAC
GCTGCCGATCAAATTTCTGTACCATACTCCACGTATCCTTTGGCAGGTTC
ATGTGCAGGGTTTCCCGCGCATTAGCTGTGCGGACATGAAACAGTAGTGT
ATCACGCAGTCGACTACCGACTAAACACGGGTGCTTTGAATCCAAGGCTG
GAAATCGCTTGTGCGAATACGTTGATGCCTATCCCCATTTTCGTATTAGA
TCCAAGATCCTTTGCCCCCTTTTCCGGCATCAACGTAACTGGCTTCCATG
AGAAATTGCGAGCGCAAACTTCATTGCTTTCGGCGCTATGACAAGCTGGT
GTCCCTGTGTCAATTCTCAACCTACCGAGCACCCAAAGTCTATCGGTTTG
ACTCAAGAGTGAACATGGATGTACACGTCATTCCGCGACCGCAGGAGCTA
TGTCGGGAACTTGCTGATGAAAAGAGGCGGGTCGCTCACACGACCCGCAA
GCTGGAGCAGAGCCAAATCACCTGCAACGAGCTCAGAGAGTCCCTCGCGC
TGGCCCAAGACACGGTGATCGGCCGCTTCTCGGTTTGCGGGTCTCCATAT
AAAATGAAAGGCTTCTCAAAACTCCTATATTTTGAATCTCCCCGCAAAGG
CACAGAGCTTCACTTTTGTCTATCTGAGTTCTGTCCCCTGTGGTGCTGAT
TTTTTTCAGTAGGATGCGCATTTGCACAGGACACATGGGTCATAATAGTT
CGAAAGTCCTGGCGTTAGTGCATGACACGGCGAGGTAGATCGCTCATCGA
ATAAACAGGGCGTGCTCGCCCCCATCGTTGACCATTCCACTGTCCTGTCG
ATGCTGATTAATTGCTGGCTTGGGAAGACGAACGACGTTATCGGCAGGCA
CTAAGTGTAGAGACCGCCGGACCGCAAAAACAAAAAGACAGCTTCCTCTC
CTCCTAAGGCGACGAGGCTCAGGGGAAATTCCATCAGCCGGCGCCGGCAA
ACCACCTCACAGATCGCTTCTCCGTTTTCTCCCTCTTTAGGTAATGAAGT
TACGCGACCACGAGATTGCTTGGGCCGAGAGCACCGCCAGCGAGATGTCT
CTGAAGGCGGAGATGTGCGCGCTGAAGGATGAGTACGGGAGCGTCTCGGG
AGAAGTATCGGTGCTTAGGAAGCGCTGCGAAATGTTACAGAGGGAGAACG
CGGAGCTCGTAGAGAGGTACGTCACGACGAGGGAGGCGCGTTCGTGCGCC
AAAGCCTCGCCTTGTGCTTGCGCCGGACCCAAGAACAAAACTCATCGGTT
GTTATGTCCCCCGATGATAGACTAGATACCCCGAGAAGCGCCGAACTCCA
GTCAAACCTTCACAGGTCAGACAATGTACCCGATGGATGAGACATTGTGG
ACACATTGTCAAGGTCAAAATGCCCCCAAGGTTGGAACCTAACGATCTTT
GTGTACCGGCCTTGTTGGAGTTTTGACCTCGGCAAGGTGTCCACCATGCC
TCATCCATCGGGTACATTGTCTGAGGGGGGGGAGTGTCCACCTGTGTTGT
CATGATTTTCTTCAGTCTCATTGTTGCACAAGGTCTGGTTAAGCGGTTCG
CTTGTCCCCCCGGGCGGGTGGTTAAAACGAAGCGGGACCTTGGCGAGCCC
GACCAATCGAACAGGTGCCCCCGCCACCATCACCCCCATTTCTCTTGCTC
CCTCGGAGCGGCTGAAGGTATCGTGACACGAACAAATCGAGCAAGGCATC
CTCGATCCCCCGCCGATGATGCGCCCGGTCCCCGCTACTCAGCATCAAGG
TTCATCCGCTGCTACTGCTGCGGCTTAGCTTCGCTCGAGGTCCTCGGCTC
TTTTTGTTGGCCAATACATCTTTCTCGTTCGCGGTACCAGTGTAAATCTC
ACCGGCGCAGTCTCCGACGGCTCTGATCACCGCCGCCCATAATACATGAA
CACATCTGCCGCCTCGTGACTGGTTGAAAAAACTCTGACGGCCCTGAGCT
GCTCTCGTCCTGTACCCAGACGACCCTCCCCTATTCTTCTAAAGGAACCT
CTCAAGCTTCCATCTATTTGTACACCCTCTTCCTCTCACTCACGCCGTTC
CTGTCTCGCTAATTAACTCATTGTTCTAGGTTCGCGAAGATTGCGGAAGA
GAAGAGGCAGGTGGAGTCGAGGGCGCGCCGGCTGTTGAGTAGGGACCGGT
ACCGCGGCTACTGAGCACGATCCAATCAAACGGGATTGCCATGGATTTCC
TTTGGGGAGGCGTGGCGAGGTTTGGCTGGATATGCCCAAGGAAAAGACGA
CTGGGACGAAGCAGAGAAATGCACAGTTGGATGAGATGCCGTGCGAGTTG
ACTTTCCCGCGTACCACAGGATGAGGAACCATGTGATTTTGCATTTCCCA
CGTACCGTAGGGTCAGAAACCAAGCGAGCCGCCTTTCTCGCGTACCGTGG
GATGAGAAATCAAGAGAGTTGCCTTTCCCACGTACCGCGGGATGAAACCA
AGCGAGTCGTCGTTCCCACGGTCGGTGTCGCCGTCATCGTCGTTAGGTAA
TCGAGTTGTGAGTGAATGAAGATCTTGTCTACATCGTTGCTCTCGTCTTG
CCACATTCAGATGAAGATTGATCAAAACTGGTGTCCTATGTGTCTCAAAG
CCGGGGTGTTTCGTTTTTACGGTCTTTCGCCCCGCGGGCCTGCGTGAGCC
GCTCACCGAGCGTCAATTTTCAAGCATGGACTATATGATGCGAGGATTTG
GGCGGGGTCATGCAGCGCGTTCGCCTTCGCGGCGCGCCAACTCTGTTCGA
GGCACGCAGGCATAATTTGGTGGTGTCGATACGGCCGTTGTGTTTTTTGG
TGTTGTTGTCCTTGCTGCTTCAGCGGGTGGCGATTTTGTTGGTGTTGTTT
CCCAGACTAGCTCATTCCGAAAACCTAGCCCCCGAGTCATGCGGGTATGG
TGCCAGAGTTTTCGCGGAACATAGAGGCTCGAGC
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Coding sequence (CDS) from alignment at P-lacustris_contig100:30050..34983+

>mRNA_P-lacustris_contig100.99.1 ID=mRNA_P-lacustris_contig100.99.1|Name=mRNA_P-lacustris_contig100.99.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1344bp|location=Sequence derived from alignment at P-lacustris_contig100:30050..34983+ (Pleurocladia lacustris SAG_25_93)
ATGCTCCATGGAGGAGAGACCCTCGCCAGCTTGTCACTGTTGGACAGAAC
TTCATGCGGCAGAGACAGCGGGGTACTCGCCAGCGGTGCTGACTTCTCTC
GGAATGCCAAGATGGGCGCGGGGGGCACCTCTTTCGCAACCTCCGACGCC
AACAATTTGCCTGCGGCAACTTCATCGAGAGCCGGAGGAACTCCAGGCAG
CGACGACGATCTCACGGACACCGACGAGGGTATGCTCCATGGAGGAGAGA
CCCTCGCCAGCTTGTCACTGTTGGACAGAACTTCATGCGGCAGAGACAGC
GGGGTACTCGCCAGCGGTGCTGACTTCTCTCGGAATGCCAAGATGGGCGC
GGGGGGCACCTCTTTCGCAACCTCCGACGCCAACAATTTGCCTGCGGCAA
CTTCATCGAGAGCCGGAGGAACTCCAGGCAGCGACGACGATCTCACGGAC
ACCGACGAGGGTGTGATGGCCAGGTTGGCGGAATTCACGGAGATGACCAG
GCGAACCGCTGTTCACAATGAGGTGATGGCCAGGTTGGCGGAATTCACGG
AGATGACCAGGCGAACCGCTGTTCACAATGAGGAGCTATGTCGGGAACTT
GCTGATGAAAAGAGGCGGGTCGCTCACACGACCCGCAAGCTGGAGCAGAG
CCAAATCACCTGCAACGAGCTCAGAGAGTCCCTCGCGCTGGCCCAAGACA
CGGAGCTATGTCGGGAACTTGCTGATGAAAAGAGGCGGGTCGCTCACACG
ACCCGCAAGCTGGAGCAGAGCCAAATCACCTGCAACGAGCTCAGAGAGTC
CCTCGCGCTGGCCCAAGACACGGTAATGAAGTTACGCGACCACGAGATTG
CTTGGGCCGAGAGCACCGCCAGCGAGATGTCTCTGAAGGCGGAGATGTGC
GCGCTGAAGGATGAGTACGGGAGCGTCTCGGGAGAAGTATCGGTGCTTAG
GAAGCGCTGCGAAATGTTACAGAGGGAGAACGCGGAGCTCGTAGAGAGGT
AATGAAGTTACGCGACCACGAGATTGCTTGGGCCGAGAGCACCGCCAGCG
AGATGTCTCTGAAGGCGGAGATGTGCGCGCTGAAGGATGAGTACGGGAGC
GTCTCGGGAGAAGTATCGGTGCTTAGGAAGCGCTGCGAAATGTTACAGAG
GGAGAACGCGGAGCTCGTAGAGAGGTTCGCGAAGATTGCGGAAGAGAAGA
GGCAGGTGGAGTCGAGGGCGCGCCGGCTGTTGAGTAGGGACCGGTACCGC
GGCTACTGAGTTCGCGAAGATTGCGGAAGAGAAGAGGCAGGTGGAGTCGA
GGGCGCGCCGGCTGTTGAGTAGGGACCGGTACCGCGGCTACTGA
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