mRNA_P-wetherbeei_contig16018.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16018.1.1
Unique NamemRNA_P-wetherbeei_contig16018.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.490e-69
Identity = 144/293 (49.15%), Postives = 177/293 (60.41%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAAAGAGAGAQLQGMAQV----------------------QAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCR-------------------AFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGL-------------GQTSLEQIFNFFAGQQQEESEAAPG 1019
            + GVDP+ARR MW VI+RIVT N++CALVLTTHSMEEAEALCQRIG+MVGGRL+CLGS+QHLKSRFG G+QLE T A PT    +AA Q L A+AG   G                               QA  G++P L  E+  DG G+LL+QEL+++G++   DVA W + E  CR                   A  AF++  FAGAQL EKQGGK+R  LPPQ+G +LG IFGL+E++R  L + DY L             GQTSLEQIFN FA +Q EE+  APG
Sbjct: 2084 STGVDPVARRHMWEVISRIVTTNKQCALVLTTHSMEEAEALCQRIGIMVGGRLQCLGSAQHLKSRFGSGYQLEVTAALPTSAAASAAAQSLCASAGVAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKQALRGSYPALESEISQDGRGSLLWQELLAEGSIQTQDVAEWALQESACRKSRVXXXXXXXXXXXXXXNAILAFIARHFAGAQLLEKQGGKLRLALPPQEGMTLGAIFGLIEDSRAELGIGDYALXXXXXXXXXXXXXGQTSLEQIFNGFAAKQAEETSDAPG 2376          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 240 bits (612), Expect = 1.470e-67
Identity = 133/246 (54.07%), Postives = 174/246 (70.73%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLL----AAAGAGAGAQL--QGMAQVQAALGTFP-ELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DP+ARRFMW+VI +I T+ ++CA++LTTHSMEE EALC RIG+MVGGRLRCLGS+Q LKSRFG GFQLE  L  P+ EE+A   +R+     AAA  GA  +L  Q  A V AALG  P +  P+    G+G LLY EL+++G +A  D+ A+   E R    +AFV+  F GA L+EKQ GK+RF+ PPQ G +LGE+FG +E+ R +L V +Y L QT+LEQ+FNFFAGQQ+EE+  A G
Sbjct: 1719 STGMDPVARRFMWDVITKISTERQQCAVILTTHSMEECEALCTRIGIMVGGRLRCLGSAQRLKSRFGLGFQLELGLRLPSEEELADGLRRVAEGAPAAAAGGAAQRLAQQDFAPVLAALGADPAQWLPKFCETGAGALLYHELLARGGVALGDLVAFHARERRAAQAEAFVADTFKGAVLREKQSGKLRFEYPPQPGLALGEMFGALEDRRAQLGVEEYALSQTTLEQVFNFFAGQQEEETGRAAG 1964          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.180e-66
Identity = 129/241 (53.53%), Postives = 164/241 (68.05%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAAAGAGAG--AQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DPMARR MWN I RIVTQNR CA++LTTHSMEE EALCQRIG+MVGGR+RCLGSSQHLK+RFG+GFQLEA +   +  +I A    +  A G  A   ++L G A   A     PE APE+  +G G ++Y  L ++ T+ A D AAW  LE+ C    AFV + F GA+L+EKQ  KMRF++P Q+ ++LG +FG +E++   L V +Y L Q SLEQIFN FA QQQEE   A G
Sbjct: 1729 STGMDPMARRMMWNYIMRIVTQNRSCAMILTTHSMEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTDIDAMLATIAPATGGQASLPSELCGPALDAA---QCPEFAPEITAEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIEDSAAELGVGEYSLSQISLEQIFNGFASQQQEEQGRAAG 1966          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 7.990e-66
Identity = 126/240 (52.50%), Postives = 163/240 (67.92%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAAA-GAGAGAQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DPMARRFMWNVI RIVT+N+ECA++LTTHSMEE EALCQRIG+MVGGRLRCLG+SQHLK+RFG+GFQLEA +   T EE  A    L  A  G G      G+ +   A    PEL  E+   G G  +Y  + ++G ++  D+AAW  +E++C    AF+   FAGA L+EKQ  KMRF+ PPQ+ ++L ++FG +E  R  L + +Y L QTSLEQ+FN FA QQ+EE   A G
Sbjct: 1707 STGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAITHEETDAMMATLAHATNGQGTLTNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVSVRDLAAWICVEKKCSRVIAFMQQHFAGAALREKQNAKMRFEFPPQKNQTLAQMFGFIENERDSLFIGEYALSQTSLEQVFNGFAAQQEEELGHAAG 1946          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 3.730e-65
Identity = 123/240 (51.25%), Postives = 163/240 (67.92%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAAA-GAGAGAQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DPMARRFMWNVI RIVT+N+ECA++LTTHSMEE EALCQRIG+MVGGRLRCLG+SQHLK+RFG+GFQLEA +     EE  A    L  A  G G      G+ +   A    P+L  E+   G G  +Y  + ++G +   D+AAW  +E++C    AF+  +FAGA ++EKQ  KMRF+ PPQ+ ++L ++FG++E  R  L + +Y L QTSLEQ+FN FA QQ+EE   A G
Sbjct: 1727 STGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAMMAELAPATNGQGTLGNDGGVLRAALAAAQAPDLEAEVSATGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVENEREALCIGEYALSQTSLEQVFNGFAAQQEEELGHAAG 1966          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 6.020e-63
Identity = 132/288 (45.83%), Postives = 166/288 (57.64%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEA-----------------------------------------------TLAYPTGEEIAAAEQRLLAAAGAGAG--AQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DPMARR MWN I RIVTQNR CA++LTTHSMEE EALCQRIG+MVGGR+RCLGSSQHLK+RFG+GFQLEA                                               +L     ++I A    +  A G  A   ++L G A   A     PELAPE+  +G G ++Y  L ++ T+ A D AAW  LE+ C    AFV + F GA+L+EKQ  KMRF++P Q+ ++LG +FG +E+N   L V +Y L Q SLEQIFN FA QQQEE   A G
Sbjct:  301 STGMDPMARRMMWNYIMRIVTQNRSCAMILTTHSMEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTVSWSWAATTARKALSHRMKYFGIQSQQYCRLPFYNNPVLSLFLEKPQDIDAMLATIATATGGQASLPSELCGPALDAA---QCPELAPEITPEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIEDNAAELGVGEYSLSQISLEQIFNGFASQQQEEQGRAAG 585          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK)

HSP 1 Score: 207 bits (528), Expect = 2.540e-61
Identity = 118/241 (48.96%), Postives = 155/241 (64.32%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAAAGAGAGAQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGR--SLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DP+ARRFMW VI RI T+ ++ A++LTTHSMEE EALC RIG+MVGG+LRCLGS+QHLKSRFG G+QLE      T EE+A A ++L A  G  +  QL G A  +   G   +   E    GS   L  EL  KG ++A ++AAW +L+ R RA  A+V   F GA L+E+Q G+ RF++P + G    +  +F  +E  R  L + +Y L QTSLEQIFNFFA QQ+EE   A G
Sbjct:   61 STGMDPVARRFMWEVITRISTERQQAAIILTTHSMEECEALCTRIGIMVGGQLRCLGSAQHLKSRFGLGYQLELGARTATAEELATATEKLQAEGGQLSEGQL-GAALQRLGYGEDYDWRTEFLPSGSAATLGHELAVKGAVSAEELAAWALLDGRVRALHAWVGRAFEGAVLRERQAGRARFEVPHRAGGRGGMAGMFAALEGQREALGIEEYALSQTSLEQIFNFFASQQEEEKGKAEG 300          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: K8YZT2_NANGC (Antibiotic transport system ATP-binding protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZT2_NANGC)

HSP 1 Score: 202 bits (514), Expect = 2.500e-56
Identity = 116/267 (43.45%), Postives = 167/267 (62.55%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAE----------QRLLAAAGAGAGAQLQG-----------MAQVQAALGTFPELA--PEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQ-----GRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            ++G+D +ARRFMW VI+ I T+  EC ++LTTHSMEE EALC RIG+MVGGR RC+GS+QHLKSR+G G+QLE ++A P GE + A++          +R++  A     A+L+G           M Q++ AL    + A    +   G+G  ++Q + + G++   + A WC LE+R  +   F+   +  A L+E+QG K+RF++P +       R L E+FGL+E+N+ RL V DY + QTSLEQIFNFFAGQQ+EE   A G
Sbjct:  309 SSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIGVREFAGWCSLEDRMESILRFIMDNYPDAVLRERQGTKVRFEIPSKDTNTGAARKLSEMFGLIEDNKGRLHVEDYSVCQTSLEQIFNFFAGQQEEEKGPAAG 575          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.040e-55
Identity = 114/240 (47.50%), Postives = 152/240 (63.33%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAAA-GAGAGAQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            + G+DPMARRFMWNVI RIVT+N+ECA++LTTHSMEE EALCQRIG+MVGGRLRCLG+SQHLK+RFG+GFQLEA +     EE  A    L +A  G G      G+ +   A    PEL  E+   G G  +Y  + ++G +   D+AAW  +E++C    AF+  +FAGA ++EKQ  KMRF+ PPQ+ ++L ++FG++E                    +FN FA QQ+EE   A G
Sbjct:  840 STGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAMMTELASATNGQGTLGNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVE--------------------VFNGFAAQQEEELGHAAG 1059          
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Match: A0A4D9DBM5_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBM5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 7.860e-55
Identity = 116/267 (43.45%), Postives = 167/267 (62.55%), Query Frame = 3
Query:  303 TAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQRIGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAE----------QRLLAAAGAGAGAQLQG-----------MAQVQAALGTFPELA--PEMRIDGSGTLLYQELVSKGTLAAADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQ-----GRSLGEIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG 1019
            ++G+D +ARRFMW VI+ I T+  EC ++LTTHSMEE EALC RIG+MVGGR RC+GS+QHLKSR+G G+QLE ++A P GE + A++          +R++  A     A+L+G           M Q++ AL    + A    +   G+G  ++Q + + G++   + A WC LE+R  +   F+   +  A L+E+QG K+RF++P +       R L E+FGL+E+N+ RL V DY + QTSLEQIFNFFAGQQ+EE   A G
Sbjct:  627 SSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGGETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIGVREFAGWCSLEDRVESILRFIMDNYPDAVLRERQGTKVRFEIPSKDTNTGAARKLSEMFGLIEDNKGRLHVEDYSVCQTSLEQIFNFFAGQQEEEKGPAAG 893          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSC0_9STRA1.490e-6949.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XYR3_HETAK1.470e-6754.07Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D7FZA6_ECTSI3.180e-6653.53ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
D7FZE8_ECTSI7.990e-6652.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZE9_ECTSI3.730e-6551.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVX0_9PHAE6.020e-6345.83ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6V1S0H3_HETAK2.540e-6148.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8YZT2_NANGC2.500e-5643.45Antibiotic transport system ATP-binding protein (F... [more]
A0A6H5L5M8_9PHAE2.040e-5547.50ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A4D9DBM5_9STRA7.860e-5543.45ABC transporter domain-containing protein n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16018contigP-wetherbeei_contig16018:1..1418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZA6
PFAMsABC2_membrane_3,ABC_tran
Model size1019
Max annot lvl2759|Eukaryota
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
Exons3
Evalue2.64e-68
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size735
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.716196-CDS-P-wetherbeei_contig16018:0..541683186074.716196-CDS-P-wetherbeei_contig16018:0..54Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16018 1..54 -
1683186074.7291555-CDS-P-wetherbeei_contig16018:264..8221683186074.7291555-CDS-P-wetherbeei_contig16018:264..822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16018 265..822 -
1683186074.7376294-CDS-P-wetherbeei_contig16018:1011..11341683186074.7376294-CDS-P-wetherbeei_contig16018:1011..1134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16018 1012..1134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.7496054-UTR-P-wetherbeei_contig16018:1134..14181683186074.7496054-UTR-P-wetherbeei_contig16018:1134..1418Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16018 1135..1418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16018.1.1prot_P-wetherbeei_contig16018.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16018 1..1134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16018.1.1

>prot_P-wetherbeei_contig16018.1.1 ID=prot_P-wetherbeei_contig16018.1.1|Name=mRNA_P-wetherbeei_contig16018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
MPFFLCTAGVDPMARRFMWNVINRIVTQNRECALVLTTHSMEEAEALCQR
IGVMVGGRLRCLGSSQHLKSRFGQGFQLEATLAYPTGEEIAAAEQRLLAA
AGAGAGAQLQGMAQVQAALGTFPELAPEMRIDGSGTLLYQELVSKGTLAA
ADVAAWCVLEERCRAFQAFVSAEFAGAQLQEKQGGKMRFDLPPQQGRSLG
EIFGLMEENRLRLSVNDYGLGQTSLEQIFNFFAGQQQEESEAAPG
back to top

mRNA from alignment at P-wetherbeei_contig16018:1..1418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16018.1.1 ID=mRNA_P-wetherbeei_contig16018.1.1|Name=mRNA_P-wetherbeei_contig16018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig16018:1..1418- (Phaeothamnion wetherbeei SAG_119_79)
CCCTCCCTACGTTGTCATTACCTCCGTTGCCCACAGTGGCTCTGCTTGGC GGGCCTGAGATTGTCTTCCTCGACGAGCCCAGCACCGGTGAGCGAATGGC GCTTATGGGCGCTTAGTGGCTGTCGGAGCAACGGGTGGAACTAGACTGGG ATAGGCTTGTCTTCTCACGCTCTGGGAATATTTAGCCGCGGAACTGTCTT TCTCTAGGTTTCTTAAATGAAGTCCGTTGTGGTTGAAGGAACGACTGGAA ATGGCTTCGACCTCACACCCGCTCTTTCCCCTGAATGCCGTTTTTTCTGT GCACTGCAGGCGTGGACCCGATGGCGCGGCGCTTCATGTGGAATGTCATC AACCGCATCGTGACGCAGAACCGCGAGTGTGCACTTGTCCTCACGACGCA CTCCATGGTGAGCGACCTGCTTCTCGTTGCGGTGCTGCTTCAATGCCCGG TGCTGTTCTCTTGTCGTCGCAGAGCAGTAAAATTTGTCGCTTTGTCGCTG AGTCGCTTGCGGTTTGACAGCTGCCGCCCAGGTGTCCGGCTTCTTAGCCA GCCGCTCAACCGCCATTTCACCTTCGCTTCCTCCTTTCCTTTGCAGGAGG AGGCAGAGGCGCTCTGCCAGCGCATCGGCGTCATGGTCGGCGGCCGCCTC CGCTGCCTCGGCTCATCGCAGCACCTCAAGTCGCGCTTCGGCCAGGGCTT CCAGCTCGAGGCCACACTCGCTTACCCCACCGGCGAGGAGATCGCCGCGG CCGAACAGCGCCTGCTGGCGGCGGCCGGCGCGGGCGCCGGCGCGCAGCTG CAGGGCATGGCGCAGGTGCAGGCGGCGCTGGGCACATTCCCGGAGCTGGC GCCTGAGATGCGGATTGATGGGTCGGGCACGCTGCTGTACCAGGAGCTGG TGTCGAAGGGCACGTTGGCGGCGGCGGACGTAGCGGCGTGGTGCGTACTG GAGGAGCGCTGCCGGGCGTTCCAGGCGTTTGTATCGGCGGAGTTTGCCGG GGCGCAGCTGCAGGAAAAGCAGGGCGGCAAGATGCGGTTCGACCTGCCGC CGCAGCAGGGGCGGTCGCTGGGCGAGATCTTCGGGCTCATGGAGGAGAAC CGCCTCCGCCTCTCGGTCAATGACTATGGCCTCGGGCAGACCTCGCTGGA GCAGGTGAGTGGAAGAGTGGGGTCAGTTGGTTTTGAATTGTCTACCGTCT GTTTTTGCTGTGTGTACCCGAGTTGGAGGATGTCAGCGTCCGGCTATTGA GGGCACTTTGAAGCGCCAATTTTCTCTGACTCTACGCTTTCCTTCCTCGC TGCTTCGCCAGCTGGACATTCACTCTGTGCCTCTCGTTCCTTTTCGGCTT GCTCCTTCTCGTAGATCTTCAACTTTTTCGCTGGCCAGCAGCAGGAGGAG TCGGAGGCCGCCCCGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16018:1..1418-

>mRNA_P-wetherbeei_contig16018.1.1 ID=mRNA_P-wetherbeei_contig16018.1.1|Name=mRNA_P-wetherbeei_contig16018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig16018:1..1418- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTTTTTCTGTGCACTGCAGGCGTGGACCCGATGGCGCGGCGCTT
CATGTGGAATGTCATCAACCGCATCGTGACGCAGAACCGCGAGTGTGCAC
TTGTCCTCACGACGCACTCCATGGAGGAGGCAGAGGCGCTCTGCCAGCGC
ATCGGCGTCATGGTCGGCGGCCGCCTCCGCTGCCTCGGCTCATCGCAGCA
CCTCAAGTCGCGCTTCGGCCAGGGCTTCCAGCTCGAGGCCACACTCGCTT
ACCCCACCGGCGAGGAGATCGCCGCGGCCGAACAGCGCCTGCTGGCGGCG
GCCGGCGCGGGCGCCGGCGCGCAGCTGCAGGGCATGGCGCAGGTGCAGGC
GGCGCTGGGCACATTCCCGGAGCTGGCGCCTGAGATGCGGATTGATGGGT
CGGGCACGCTGCTGTACCAGGAGCTGGTGTCGAAGGGCACGTTGGCGGCG
GCGGACGTAGCGGCGTGGTGCGTACTGGAGGAGCGCTGCCGGGCGTTCCA
GGCGTTTGTATCGGCGGAGTTTGCCGGGGCGCAGCTGCAGGAAAAGCAGG
GCGGCAAGATGCGGTTCGACCTGCCGCCGCAGCAGGGGCGGTCGCTGGGC
GAGATCTTCGGGCTCATGGAGGAGAACCGCCTCCGCCTCTCGGTCAATGA
CTATGGCCTCGGGCAGACCTCGCTGGAGCAGATCTTCAACTTTTTCGCTG
GCCAGCAGCAGGAGGAGTCGGAGGCCGCCCCGGGC
back to top