mRNA_P-wetherbeei_contig15599.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15599.1.1
Unique NamemRNA_P-wetherbeei_contig15599.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A2D7FHK3_9HYPH (Biotin_lipoyl_2 domain-containing protein n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FHK3_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 2.350e-40
Identity = 83/151 (54.97%), Postives = 115/151 (76.16%), Query Frame = 1
Query:  118 GQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASVTQR 570
            G++S+Q+TGERS RV+ + VRVGDRVKKGD++A+L+T  LEADR +A+ AL E++A V VA+S +  A+L   R+  L+ S S+ R+ FEDAEV LR++++ L++A+  A +R+AEV R  LEIRLA I APYDG+V  I  NVGA+VTQR
Sbjct:    2 GKVSSQLTGERSVRVKELNVRVGDRVKKGDIIAKLSTEQLEADRKVAEGALAEAKALVTVAESRITGAKLVLGRQERLRKSTSFQRSAFEDAEVALRSAEASLRSAKGVAAQRQAEVERIALEIRLANIVAPYDGIVKSINANVGAAVTQR 152          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A1H3VHY7_9RHOB (RND family efflux transporter, MFP subunit n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H3VHY7_9RHOB)

HSP 1 Score: 90.1 bits (222), Expect = 6.290e-18
Identity = 67/181 (37.02%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   31 GLALALVVGVASQRVEAEVVE------GKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGA 555
            GLA     GV    V+  ++E      G+LVA  R  ++A+  G     V +  VRVGDRV++GD+LAR++T  LE    +A  AL ++ AS E A++ VA A    +R + L+GS +++   FED   EL  ++SR+  A +   R  A+VA+ E ++  A  +AP+DGVV+E     GA
Sbjct:   21 GLAQDRPAGVVVDAVDVRMLEETAPVLGRLVAATRSVVAARTAGV----VAAAPVRVGDRVRRGDLLARIDTERLEIAERVAGAALAQAEASREAAQADVALAAQALERISGLRGSSAFSSGAFEDRRTELARARSRVGAAAAXXERARADVAQAEYDLAYAATRAPFDGVVIERSAQPGA 197          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: UPI0016724CF4 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016724CF4)

HSP 1 Score: 86.3 bits (212), Expect = 1.430e-16
Identity = 56/147 (38.10%), Postives = 95/147 (64.63%), Query Frame = 1
Query:   88 VEGKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVV 528
            V G+LVA Q G ++A++    ++RV+ V V+VGDRV++GDVLA+L+    E++R +   A+E +RA+V   ++ +A+AR   DR+  LKGS +Y +   EDA+ ++  +QS L  +E++     A++   E+ +    ++APYDGVV
Sbjct:   49 VLGRLVARQSGVVAARV----AERVDRVQVQVGDRVQRGDVLAKLSDDRAESERRLRAAAVEAARAAVGRDRATLAKARQALDRQEQLKGSTAYRKDRAEDAQRDVEIAQSTLSRSEADLAAATAQLNLAEIALVDTSVRAPYDGVV 191          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A7C5PT63_9HYPH (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C5PT63_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 2.040e-16
Identity = 58/156 (37.18%), Postives = 93/156 (59.62%), Query Frame = 1
Query:   88 VEGKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGA 555
            V G+LVA Q G ++AQ+ G     V  +LV VGD VKKGD++A L+T + +A R +    + ESRA++  AK+ +  ARL+ +R+  LK + ++NRA FE  +     + + L  A +    ++A +A  ++EI  A + +PYD VV+E  T  G+
Sbjct:   52 VIGRLVARQSGDVAAQVDGA----VRRILVEVGDHVKKGDIIALLDTETRKARRDVLVAGIAESRAALAAAKADLELARLNMERQGKLKKTGAFNRALFETTQQAFAKAGAELARAHAAIAAKKASLALIDVEIDRARVTSPYDAVVVERKTEAGS 203          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A3D2BUU6_9PROT (HlyD_D23 domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BUU6_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 1.530e-15
Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = 1
Query:   70 RVEAEVVE---------GKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASVT 564
            RV+A +VE         G+LVA + G ++A++ G     V S+   +GDRVKKGDVLA +    L A R     AL   RA V+ AK+  ++   +  R A+LK S +++RA +ED + ++ A  + L    S     +AE+ +  +++   EI+APYDGVV E  T VGA V+
Sbjct:  120 RVDAVIVEPLSQTSPVIGRLVASRTGDVAARINGA----VVSMPTSIGDRVKKGDVLATIALERLTAKRDKYAAALSTRRAMVQSAKAEYSKKNQELRRMANLKKSSAFSRARYEDLQRDVEARSAALVERRSQLKEAQAELDQAAIDLYNGEIRAPYDGVVSEKHTEVGAYVS 289          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A8U2X1_9PROT (Efflux transporter, RND family, MFP subunit n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8U2X1_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 1.830e-14
Identity = 62/175 (35.43%), Postives = 101/175 (57.71%), Query Frame = 1
Query:   49 VVGVASQRVE--AEVVE--GKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASV 561
            VVGV   R E  ++ ++  G+LVA Q G ++A++    ++RV  V V+VGDRVK+GDVLARL    L ++RL+   ++E +RA+V               R+  LKGS +Y +   EDA+ ++  +Q+ L  ++++A    A++   ++ +  A ++APYDGVV    T  GA V
Sbjct:   42 VVGVDPVRAEPLSQTIDVLGRLVARQNGMVAARV----AERVAIVEVQVGDRVKRGDVLARLADDRLSSERLLRVASVEAARAAVARDXXXXXXXXXXXXRQDQLKGSTAYRKDRTEDAQRDVEIAQAALTRSQADATAATAQLELADIAVTDATVRAPYDGVVTIKHTTAGAYV 212          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A8G2F0E2_9PROT (RND family efflux transporter, MFP subunit n=2 Tax=Thalassobaculum TaxID=526215 RepID=A0A8G2F0E2_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 4.150e-13
Identity = 54/158 (34.18%), Postives = 96/158 (60.76%), Query Frame = 1
Query:   88 VEGKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASV 561
            V G+ VA Q G ++A++    ++RV+ V V+VGD+VK+GDV+ARL++  L A+RL  +   + + + +   ++ +A+A+   DR   L+ S ++     EDAE ++ A ++ L+ AE++A    A++   E+ ++ A I APYDGVV     + G+ V
Sbjct:   52 VLGRFVARQSGVLAARV----AERVDEVAVQVGDQVKRGDVIARLSSDRLAAERLRTEAQAKAAESDITAERANLAKAQQTLDRLNKLRSSSAHRPDRVEDAERDVEAHRAALRAAEADAAVARAQLDLAEIALQDAAITAPYDGVVTVKHVSAGSYV 205          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: UPI0019F23E7C (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F23E7C)

HSP 1 Score: 74.3 bits (181), Expect = 2.600e-12
Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   88 VEGKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASV 561
            V G+ VA Q G ++A ++G     VE +LV VGDRV KGDVL RL+T     +R + +  L E +A +  A++ +  A+ +  R  SLK S ++++A +ED   E+   QS               +   EL+++ AEIKAPY+GVV+      GA V
Sbjct:   37 VIGRFVARQAGPVAALVSGP----VEEILVDVGDRVAKGDVLVRLSTDITVGNRNLREAELSEKKARLGSARAQLRLAKQELARIESLKKSAAFSQASYEDKRAEVARYQSSXXXXXXXXXXXXXXLELSELDMKRAEIKAPYNGVVVARQAVAGAYV 190          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A2E8R3B5_9PROT (HlyD_D23 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E8R3B5_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 3.710e-12
Identity = 60/196 (30.61%), Postives = 105/196 (53.57%), Query Frame = 1
Query:    1 MFANSKSAFQGLALALVVGVASQRVEAEVVE---------GKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASV 561
            +FA    A  G+  AL    A+  V+A  VE         G+LVA Q G ++A++ G     V  + V VGDRVK+GDVLA L++  L+  R +      E+ A +++A++ +A  R +  R   L+ S ++++   ED+  ++  +++ +  A +   R  A +A  E+++R A+++APY GV+    T  G+ V
Sbjct:   13 LFALGAFALXGVQXALAQHAAAVGVDAVRVEPLSQTIPVIGRLVAKQSGIVAARIGGP----VADMRVSVGDRVKEGDVLAILDSTRLKRQRALLVAETAETEAQIKLAEAQLALRRQELSRLEGLRDSAAFSKGRXEDSRQQVVVAEASIGAAMARHERALANLALAEIDLRNAQVRAPYAGVITLEQTETGSFV 204          
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Match: A0A2D8PRT2_9PROT (HlyD_D23 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRT2_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 4.670e-12
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   88 VEGKLVADQRGQISAQMTGERSQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVAKSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNANRREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASV 561
            V G+LVA Q G ++A++ G     V S+   VGDRVKKG+V+A L    L A R     AL   RA V+VA++  ++   +  R A+L+ S +++RA FED E +  A ++ L    S          +  +++  + I+APYDGVV +  T VGA V
Sbjct:  135 VIGRLVARQSGDVAARINGA----VVSMPTAVGDRVKKGEVIATLAQERLTAKRDKYAAALTTRRAMVQVAQAEYSKKNQELRRMANLRKSSAFSRARFEDLERDAEARRASLTERRSXXXXXXXXXXQATIDLYNSNIRAPYDGVVSQKHTEVGAYV 288          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15599.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FHK3_9HYPH2.350e-4054.97Biotin_lipoyl_2 domain-containing protein n=2 Tax=... [more]
A0A1H3VHY7_9RHOB6.290e-1837.02RND family efflux transporter, MFP subunit n=1 Tax... [more]
UPI0016724CF41.430e-1638.10efflux RND transporter periplasmic adaptor subunit... [more]
A0A7C5PT63_9HYPH2.040e-1637.18Efflux RND transporter periplasmic adaptor subunit... [more]
A0A3D2BUU6_9PROT1.530e-1536.78HlyD_D23 domain-containing protein n=2 Tax=Rhodosp... [more]
A8U2X1_9PROT1.830e-1435.43Efflux transporter, RND family, MFP subunit n=1 Ta... [more]
A0A8G2F0E2_9PROT4.150e-1334.18RND family efflux transporter, MFP subunit n=2 Tax... [more]
UPI0019F23E7C2.600e-1236.08Efflux RND transporter periplasmic adaptor subunit... [more]
A0A2E8R3B5_9PROT3.710e-1230.61HlyD_D23 domain-containing protein n=1 Tax=Rhodosp... [more]
A0A2D8PRT2_9PROT4.670e-1236.71HlyD_D23 domain-containing protein n=1 Tax=Rhodosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15599contigP-wetherbeei_contig15599:2..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog331869.BAL199_22172
PFAMsHlyD_3
Model size570
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02005
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.99e-15
EggNOG OGsCOG0845@1|root,COG0845@2|Bacteria,1Q112@1224|Proteobacteria,2V906@28211|Alphaproteobacteria,4BSRF@82117|unclassified Alphaproteobacteria
DescriptionBelongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Cds size570
COG categoryM
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186061.3954546-CDS-P-wetherbeei_contig15599:1..5711683186061.3954546-CDS-P-wetherbeei_contig15599:1..571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15599 2..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15599.1.1prot_P-wetherbeei_contig15599.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15599 2..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15599.1.1

>prot_P-wetherbeei_contig15599.1.1 ID=prot_P-wetherbeei_contig15599.1.1|Name=mRNA_P-wetherbeei_contig15599.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MFANSKSAFQGLALALVVGVASQRVEAEVVEGKLVADQRGQISAQMTGER
SQRVESVLVRVGDRVKKGDVLARLNTVSLEADRLIAQRALEESRASVEVA
KSVVARARLDYDRRASLKGSPSYNRAGFEDAEVELRASQSRLQNAESNAN
RREAEVARCELEIRLAEIKAPYDGVVLEIMTNVGASVTQR
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mRNA from alignment at P-wetherbeei_contig15599:2..571-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15599.1.1 ID=mRNA_P-wetherbeei_contig15599.1.1|Name=mRNA_P-wetherbeei_contig15599.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig15599:2..571- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGCGAACTCCAAAAGCGCATTCCAAGGTCTGGCCTTGGCGCTGGT CGTCGGCGTCGCCTCTCAACGCGTCGAGGCCGAAGTCGTCGAAGGCAAGC TCGTTGCCGATCAGCGCGGACAGATCTCCGCTCAGATGACGGGAGAGCGG TCGCAACGCGTGGAAAGCGTGCTCGTCCGCGTCGGGGACCGGGTCAAGAA GGGTGACGTTCTGGCCCGGCTCAACACCGTGTCGCTGGAGGCCGACCGCC TCATCGCGCAACGCGCGCTGGAAGAATCGCGCGCATCGGTCGAGGTCGCA AAGTCGGTCGTGGCCAGGGCACGGCTCGACTACGATCGTCGAGCGAGCCT CAAGGGATCGCCGTCCTACAACCGTGCGGGGTTCGAGGATGCGGAAGTCG AATTGCGGGCATCGCAAAGCCGGCTTCAGAACGCGGAAAGCAACGCCAAC CGGCGCGAGGCGGAAGTGGCGCGCTGCGAACTCGAGATCCGGCTGGCGGA GATCAAAGCGCCCTATGACGGCGTTGTACTCGAGATCATGACGAATGTCG GCGCCTCGGTCACGCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15599:2..571-

>mRNA_P-wetherbeei_contig15599.1.1 ID=mRNA_P-wetherbeei_contig15599.1.1|Name=mRNA_P-wetherbeei_contig15599.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig15599:2..571- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGCGAACTCCAAAAGCGCATTCCAAGGTCTGGCCTTGGCGCTGGT
CGTCGGCGTCGCCTCTCAACGCGTCGAGGCCGAAGTCGTCGAAGGCAAGC
TCGTTGCCGATCAGCGCGGACAGATCTCCGCTCAGATGACGGGAGAGCGG
TCGCAACGCGTGGAAAGCGTGCTCGTCCGCGTCGGGGACCGGGTCAAGAA
GGGTGACGTTCTGGCCCGGCTCAACACCGTGTCGCTGGAGGCCGACCGCC
TCATCGCGCAACGCGCGCTGGAAGAATCGCGCGCATCGGTCGAGGTCGCA
AAGTCGGTCGTGGCCAGGGCACGGCTCGACTACGATCGTCGAGCGAGCCT
CAAGGGATCGCCGTCCTACAACCGTGCGGGGTTCGAGGATGCGGAAGTCG
AATTGCGGGCATCGCAAAGCCGGCTTCAGAACGCGGAAAGCAACGCCAAC
CGGCGCGAGGCGGAAGTGGCGCGCTGCGAACTCGAGATCCGGCTGGCGGA
GATCAAAGCGCCCTATGACGGCGTTGTACTCGAGATCATGACGAATGTCG
GCGCCTCGGTCACGCAGCGG
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